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The map label for this gene is hypC [H]

Identifier: 109947802

GI number: 109947802

Start: 1103226

End: 1103462

Strand: Reverse

Name: hypC [H]

Synonym: Hac_1287

Alternate gene names: 109947802

Gene position: 1103462-1103226 (Counterclockwise)

Preceding gene: 109947803

Following gene: 109947801

Centisome position: 71.01

GC content: 39.66

Gene sequence:

>237_bases
ATGTGTTTAGCGATCCCTTCTAAAGTCATAGCCATTGAGGACAATGTGGCTCTTTTAGAGACTTTAGGCGTTCAAAGAGA
AGCGAGCTTGGATTTAATGGGTGAGTCTGTTAAGGTGGGCGATTATGTGCTATTACACATCGGCTATGTGATGAGTAAGA
TTGATGAAAAAGAAGCCCTAGAATCCATTGAGCTCTATCAAGAAATGATCGCTAAAATGAATGAAGTGCATGAATAA

Upstream 100 bases:

>100_bases
TTTTTTTAATGAGCTCCAAAGACCCTAAAAGTTTGGAAGATTTTAAAAATTTTCTTTTAGAAAAAAAGCGTGAAAATTAC
CAATCCACGCATTCGTTTTA

Downstream 100 bases:

>100_bases
TCGCAATGAGCGTTAATCATCTCATTTCGCCTTTTAGAGACAAGCAAACCATTTTAGCGCTCTCTAATGAAATCAAAAAA
CTCGCCTCCAAACTCACAGA

Product: hydrogenase expression/formation protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 78; Mature: 78

Protein sequence:

>78_residues
MCLAIPSKVIAIEDNVALLETLGVQREASLDLMGESVKVGDYVLLHIGYVMSKIDEKEALESIELYQEMIAKMNEVHE

Sequences:

>Translated_78_residues
MCLAIPSKVIAIEDNVALLETLGVQREASLDLMGESVKVGDYVLLHIGYVMSKIDEKEALESIELYQEMIAKMNEVHE
>Mature_78_residues
MCLAIPSKVIAIEDNVALLETLGVQREASLDLMGESVKVGDYVLLHIGYVMSKIDEKEALESIELYQEMIAKMNEVHE

Specific function: Required for production of hydrogenase [H]

COG id: COG0298

COG function: function code O; Hydrogenase maturation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hupF/hypC family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019812
- InterPro:   IPR001109 [H]

Pfam domain/function: PF01455 HupF_HypC [H]

EC number: NA

Molecular weight: Translated: 8708; Mature: 8708

Theoretical pI: Translated: 4.13; Mature: 4.13

Prosite motif: PS01097 HUPF_HYPC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
6.4 %Met     (Translated Protein)
7.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
6.4 %Met     (Mature Protein)
7.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCLAIPSKVIAIEDNVALLETLGVQREASLDLMGESVKVGDYVLLHIGYVMSKIDEKEAL
CCCCCCCEEEEECCCHHHHHHHCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHH
ESIELYQEMIAKMNEVHE
HHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MCLAIPSKVIAIEDNVALLETLGVQREASLDLMGESVKVGDYVLLHIGYVMSKIDEKEAL
CCCCCCCEEEEECCCHHHHHHHCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHH
ESIELYQEMIAKMNEVHE
HHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12810954 [H]