Click here to switch to the map view.

The map label for this gene is hypB [H]

Identifier: 109947803

GI number: 109947803

Start: 1103462

End: 1104190

Strand: Reverse

Name: hypB [H]

Synonym: Hac_1288

Alternate gene names: 109947803

Gene position: 1104190-1103462 (Counterclockwise)

Preceding gene: 109947804

Following gene: 109947802

Centisome position: 71.06

GC content: 38.55

Gene sequence:

>729_bases
ATGAGCGAGCAACGAAAAGAATCTTTACAAAATAACCCTAATTTGAGTAAAAAAGATGTCAAAATCGTGGAAAAGATTTT
GAGTAAAAACGACATTAAAGCCGCTGAAATGAAAGAACGCTATTTGCAAGAAGGGCTGTATGTGTTGAATTTCATGAGCT
CTCCTGGTAGCGGTAAAACCACGATGTTAGAAAATCTAGCGGATTTTAAAGACTTTAAGTTTTGCGTAGTAGAGGGCGAT
TTACAAACCAATAGAGATGCGGACAGATTGCGTAAAAAAGGCGTGAGTGCACGCCAAATCACCACCGGTGAAGCGTGCCA
TTTGGAAGCGAGTATGATTGAAGGGGCGTTTGATTTGCTCAAAGAAGAGGGGGCGTTAGAAAAAAGCGATTTTTTAATCA
TTGAAAATGTGGGGAATTTGGTTTGCCCTTCAAGCTATAATTTAGGGGCGGCGATGAATATCGTTTTACTCTCTGTCCCA
GAGGGCGATGATAAGGTGCTAAAATACCCTACGATGTTTATGTGTGCAGATGCGGTGATTATCAGTAAAGCAGATATGAT
TGAAGTGTTTAATTTTAGGGTCTCTCAAGTCAAAGAAGACATGCAAAAATTAAAGCCTGAAGCCCCCATTTTTTTAATGA
GCTCCAAAGACCCTAAAAGTTTGGAAGATTTTAAAAATTTTCTTTTAGAAAAAAAGCGTGAAAATTACCAATCCACGCAT
TCGTTTTAA

Upstream 100 bases:

>100_bases
AGCATTTTTTAAATAAAAGCCTTATTTGAGAACCAAACAAATTCAACCCCCATTTAATTAAGCATGCTAAAGTATCGCCA
TTTTAAAAAAAGGAACAAGC

Downstream 100 bases:

>100_bases
TGTGTTTAGCGATCCCTTCTAAAGTCATAGCCATTGAGGACAATGTGGCTCTTTTAGAGACTTTAGGCGTTCAAAGAGAA
GCGAGCTTGGATTTAATGGG

Product: hydrogenase expression/formation protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 241

Protein sequence:

>242_residues
MSEQRKESLQNNPNLSKKDVKIVEKILSKNDIKAAEMKERYLQEGLYVLNFMSSPGSGKTTMLENLADFKDFKFCVVEGD
LQTNRDADRLRKKGVSARQITTGEACHLEASMIEGAFDLLKEEGALEKSDFLIIENVGNLVCPSSYNLGAAMNIVLLSVP
EGDDKVLKYPTMFMCADAVIISKADMIEVFNFRVSQVKEDMQKLKPEAPIFLMSSKDPKSLEDFKNFLLEKKRENYQSTH
SF

Sequences:

>Translated_242_residues
MSEQRKESLQNNPNLSKKDVKIVEKILSKNDIKAAEMKERYLQEGLYVLNFMSSPGSGKTTMLENLADFKDFKFCVVEGD
LQTNRDADRLRKKGVSARQITTGEACHLEASMIEGAFDLLKEEGALEKSDFLIIENVGNLVCPSSYNLGAAMNIVLLSVP
EGDDKVLKYPTMFMCADAVIISKADMIEVFNFRVSQVKEDMQKLKPEAPIFLMSSKDPKSLEDFKNFLLEKKRENYQSTH
SF
>Mature_241_residues
SEQRKESLQNNPNLSKKDVKIVEKILSKNDIKAAEMKERYLQEGLYVLNFMSSPGSGKTTMLENLADFKDFKFCVVEGDL
QTNRDADRLRKKGVSARQITTGEACHLEASMIEGAFDLLKEEGALEKSDFLIIENVGNLVCPSSYNLGAAMNIVLLSVPE
GDDKVLKYPTMFMCADAVIISKADMIEVFNFRVSQVKEDMQKLKPEAPIFLMSSKDPKSLEDFKNFLLEKKRENYQSTHS
F

Specific function: Plays a role in both the hydrogenase and the urease nickel cofactor insertion step [H]

COG id: COG0378

COG function: function code OK; Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hypB/hupM family [H]

Homologues:

Organism=Escherichia coli, GI1789082, Length=225, Percent_Identity=40.8888888888889, Blast_Score=160, Evalue=5e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003495
- InterPro:   IPR004392
- InterPro:   IPR012202 [H]

Pfam domain/function: PF02492 cobW [H]

EC number: NA

Molecular weight: Translated: 27358; Mature: 27227

Theoretical pI: Translated: 5.26; Mature: 5.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEQRKESLQNNPNLSKKDVKIVEKILSKNDIKAAEMKERYLQEGLYVLNFMSSPGSGKT
CCHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCHH
TMLENLADFKDFKFCVVEGDLQTNRDADRLRKKGVSARQITTGEACHLEASMIEGAFDLL
HHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHCCCCCCEECCCCHHHHHHHHHHHHHHHH
KEEGALEKSDFLIIENVGNLVCPSSYNLGAAMNIVLLSVPEGDDKVLKYPTMFMCADAVI
HHCCCCCCCCEEEEECCCCEECCCCCCCCCEEEEEEEECCCCCCCEEECCHHHHHHHHHH
ISKADMIEVFNFRVSQVKEDMQKLKPEAPIFLMSSKDPKSLEDFKNFLLEKKRENYQSTH
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHC
SF
CC
>Mature Secondary Structure 
SEQRKESLQNNPNLSKKDVKIVEKILSKNDIKAAEMKERYLQEGLYVLNFMSSPGSGKT
CHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCHH
TMLENLADFKDFKFCVVEGDLQTNRDADRLRKKGVSARQITTGEACHLEASMIEGAFDLL
HHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHCCCCCCEECCCCHHHHHHHHHHHHHHHH
KEEGALEKSDFLIIENVGNLVCPSSYNLGAAMNIVLLSVPEGDDKVLKYPTMFMCADAVI
HHCCCCCCCCEEEEECCCCEECCCCCCCCCEEEEEEEECCCCCCCEEECCHHHHHHHHHH
ISKADMIEVFNFRVSQVKEDMQKLKPEAPIFLMSSKDPKSLEDFKNFLLEKKRENYQSTH
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHC
SF
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9923682; 11123699 [H]