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The map label for this gene is dapD

Identifier: 109947304

GI number: 109947304

Start: 643402

End: 644607

Strand: Reverse

Name: dapD

Synonym: Hac_0734

Alternate gene names: NA

Gene position: 644607-643402 (Counterclockwise)

Preceding gene: 109947305

Following gene: 109947303

Centisome position: 41.48

GC content: 38.97

Gene sequence:

>1206_bases
ATGATGAATAAATTTAAAAATTTTGTGAGCAACTACCAGCAATCTGATTGCTATAAAGAGCCTTTAGGATTTGGTATTGC
TAGAGTGGATATTGCCCCTATTTCCAAAAAGATTTTATGCACCACTTACCCTATTTTGAATTGGAAAAATGAAAATCTAG
GCTCTTATGCGGTGTTTTGCAATGCGTTTTCTGAAGAAAAAATCCTTAAAAGGAGTGCAAGCGAATGCGTCATTGAGATC
GATGAAGATTTTGTGTTAAAAGCGTTGGATTTTTACACGCCCTTTTTGAATGAAGCCTATTCCAATAAAATGGTTCATAA
AAATATCCAAGTGGTTTTAGAGCTTTTAAAGGCGTTAGAAGAAAATCGCTTGAAAAATAGTCATGGGGAGTCTCTCTATC
GCTTGGTGATCTTGTATGAAGACAAGCCTTGCGAGAGCGTGGAAAGCGTGTATATGAAACTTTTAGCACTCTCTTTAGGT
AAAGCCCCTTTGAGGAGTTTGAATCTAGAAGGCATTTTTAACCAGCTTTCTAATGTGGCTTGGAGTGGTAACAAGCCTTA
TGAATTAGAATGGCTTAGAATGAACGAAGTGGCTTTAAAAATGCGAGGTAATTTCCCTAGTATTGATTTTATAGACAAAT
TCCCACGCTATTTAATGCAAGTGATCCCTGAATTTGATAATATCCGCTTATTAGATAGCTCAAAAACGCGCTTTGGGGCG
TATTTAGGAACCGGTGGTTACACTCAAATGCCTGGGGCTAGTTATGTGAATTTTAATGCAGGGGCGATGGGAGTGTGCAT
GAATGAGGGGCGTATCTCTTCATCAGTCGTGGTTGGAGCAGGCACTGATATTGGTGGGGGAGCGAGTATTTTAGGTGTTT
TAAGCGGGGGGAACAACAACCCTATTAGCATCGGGAAAAATTGTTTGCTAGGGGCTAATAGCGTTACCGGTATTAGTTTG
GGCGATGGCTGTATTGTGGATGCAGGCGTTACGATACTAGCCGGGAGCGTGATAGAAATTGAAGAAAATGAGTTTAAAAA
GCTTTTAGAGGTGAATAGTAATTTAGAAAAACATGCTAATAATCTTTATAAGGGCAAAGAGCTTTCAGGGAAAAATGGCG
TACATTTTCGCTCAAATAGCCAAAATGGCAAGTTGATTGCTTTTAGGAGCGTGAAAAAAATTGAGTTGAATCAAAACTTG
CACTAA

Upstream 100 bases:

>100_bases
TCATTCACAAATTGGCCGAAAAGGATTTGTTTGAAACTTTTGTAACAGAAGTGGAAAATTTAGCTAAAGAAAGAGAAAAA
ACTTTAAATTAAAGGACAGG

Downstream 100 bases:

>100_bases
GGATTAAAAGAATGCTCAAAAAAAGTTTGTTATTGCTTGTTTTTTTAGTCTTACGGATTGGTGGTGCTGAAGAAAACAAT
CAAGCCCCTGGATTAAACCC

Product: hypothetical protein

Products: CoA; (R)-2-(succinylamino)-6-oxoheptanedioate

Alternate protein names: Transferase; Tetrahydrodipicolinate Succinylase; Tetrahydropicolinate Succinylase; Tetrahydrodipicolinate N- Succinyltransferase; Succinyltransferase; Transferase Hexapeptide Repeat Containing Protein; Succinyl-Transferase; Lysine Biosynthesis-Like Protein; Transferase Tetrahydrodipicolinate N-Succinyltransferase; Tranferase; Tetrahydrodipicolinate N-Succinyltransferase-Like Protein

Number of amino acids: Translated: 401; Mature: 401

Protein sequence:

>401_residues
MMNKFKNFVSNYQQSDCYKEPLGFGIARVDIAPISKKILCTTYPILNWKNENLGSYAVFCNAFSEEKILKRSASECVIEI
DEDFVLKALDFYTPFLNEAYSNKMVHKNIQVVLELLKALEENRLKNSHGESLYRLVILYEDKPCESVESVYMKLLALSLG
KAPLRSLNLEGIFNQLSNVAWSGNKPYELEWLRMNEVALKMRGNFPSIDFIDKFPRYLMQVIPEFDNIRLLDSSKTRFGA
YLGTGGYTQMPGASYVNFNAGAMGVCMNEGRISSSVVVGAGTDIGGGASILGVLSGGNNNPISIGKNCLLGANSVTGISL
GDGCIVDAGVTILAGSVIEIEENEFKKLLEVNSNLEKHANNLYKGKELSGKNGVHFRSNSQNGKLIAFRSVKKIELNQNL
H

Sequences:

>Translated_401_residues
MMNKFKNFVSNYQQSDCYKEPLGFGIARVDIAPISKKILCTTYPILNWKNENLGSYAVFCNAFSEEKILKRSASECVIEI
DEDFVLKALDFYTPFLNEAYSNKMVHKNIQVVLELLKALEENRLKNSHGESLYRLVILYEDKPCESVESVYMKLLALSLG
KAPLRSLNLEGIFNQLSNVAWSGNKPYELEWLRMNEVALKMRGNFPSIDFIDKFPRYLMQVIPEFDNIRLLDSSKTRFGA
YLGTGGYTQMPGASYVNFNAGAMGVCMNEGRISSSVVVGAGTDIGGGASILGVLSGGNNNPISIGKNCLLGANSVTGISL
GDGCIVDAGVTILAGSVIEIEENEFKKLLEVNSNLEKHANNLYKGKELSGKNGVHFRSNSQNGKLIAFRSVKKIELNQNL
H
>Mature_401_residues
MMNKFKNFVSNYQQSDCYKEPLGFGIARVDIAPISKKILCTTYPILNWKNENLGSYAVFCNAFSEEKILKRSASECVIEI
DEDFVLKALDFYTPFLNEAYSNKMVHKNIQVVLELLKALEENRLKNSHGESLYRLVILYEDKPCESVESVYMKLLALSLG
KAPLRSLNLEGIFNQLSNVAWSGNKPYELEWLRMNEVALKMRGNFPSIDFIDKFPRYLMQVIPEFDNIRLLDSSKTRFGA
YLGTGGYTQMPGASYVNFNAGAMGVCMNEGRISSSVVVGAGTDIGGGASILGVLSGGNNNPISIGKNCLLGANSVTGISL
GDGCIVDAGVTILAGSVIEIEENEFKKLLEVNSNLEKHANNLYKGKELSGKNGVHFRSNSQNGKLIAFRSVKKIELNQNL
H

Specific function: Unknown

COG id: COG2171

COG function: function code E; Tetrahydrodipicolinate N-succinyltransferase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 2.3.1.117

Molecular weight: Translated: 44352; Mature: 44352

Theoretical pI: Translated: 7.70; Mature: 7.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMNKFKNFVSNYQQSDCYKEPLGFGIARVDIAPISKKILCTTYPILNWKNENLGSYAVFC
CCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEECCEEECCCCCCCCEEEEE
NAFSEEKILKRSASECVIEIDEDFVLKALDFYTPFLNEAYSNKMVHKNIQVVLELLKALE
ECCCHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
ENRLKNSHGESLYRLVILYEDKPCESVESVYMKLLALSLGKAPLRSLNLEGIFNQLSNVA
HHHCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHCE
WSGNKPYELEWLRMNEVALKMRGNFPSIDFIDKFPRYLMQVIPEFDNIRLLDSSKTRFGA
ECCCCCEEEEEEEECEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCE
YLGTGGYTQMPGASYVNFNAGAMGVCMNEGRISSSVVVGAGTDIGGGASILGVLSGGNNN
EECCCCCCCCCCCCEEEECCCEEEEEECCCCCCCEEEEECCCCCCCCCEEEEEEECCCCC
PISIGKNCLLGANSVTGISLGDGCIVDAGVTILAGSVIEIEENEFKKLLEVNSNLEKHAN
CEECCCCEEECCCCCCEEECCCCCEEECCHHHHCCCEEEECHHHHHHHHHHCCCHHHHHH
NLYKGKELSGKNGVHFRSNSQNGKLIAFRSVKKIELNQNLH
HHCCCCCCCCCCCEEECCCCCCCCEEEEECEEEEECCCCCC
>Mature Secondary Structure
MMNKFKNFVSNYQQSDCYKEPLGFGIARVDIAPISKKILCTTYPILNWKNENLGSYAVFC
CCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEECCEEECCCCCCCCEEEEE
NAFSEEKILKRSASECVIEIDEDFVLKALDFYTPFLNEAYSNKMVHKNIQVVLELLKALE
ECCCHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
ENRLKNSHGESLYRLVILYEDKPCESVESVYMKLLALSLGKAPLRSLNLEGIFNQLSNVA
HHHCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHCE
WSGNKPYELEWLRMNEVALKMRGNFPSIDFIDKFPRYLMQVIPEFDNIRLLDSSKTRFGA
ECCCCCEEEEEEEECEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCE
YLGTGGYTQMPGASYVNFNAGAMGVCMNEGRISSSVVVGAGTDIGGGASILGVLSGGNNN
EECCCCCCCCCCCCEEEECCCEEEEEECCCCCCCEEEEECCCCCCCCCEEEEEEECCCCC
PISIGKNCLLGANSVTGISLGDGCIVDAGVTILAGSVIEIEENEFKKLLEVNSNLEKHAN
CEECCCCEEECCCCCCEEECCCCCEEECCHHHHCCCEEEECHHHHHHHHHHCCCHHHHHH
NLYKGKELSGKNGVHFRSNSQNGKLIAFRSVKKIELNQNLH
HHCCCCCCCCCCCEEECCCCCCCCEEEEECEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: succinyl-CoA; (R)-2,3,4,5-tetrahydropyridine-2,6-dicarboxylate; H2O

Specific reaction: succinyl-CoA + (R)-2,3,4,5-tetrahydropyridine-2,6-dicarboxylate + H2O = CoA + (R)-2-(succinylamino)-6-oxoheptanedioate

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA