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The map label for this gene is oppA fragment 2 [C]

Identifier: 109946854

GI number: 109946854

Start: 199991

End: 200452

Strand: Direct

Name: oppA fragment 2 [C]

Synonym: Hac_0234

Alternate gene names: 109946854

Gene position: 199991-200452 (Clockwise)

Preceding gene: 109946853

Following gene: 109946855

Centisome position: 12.87

GC content: 38.53

Gene sequence:

>462_bases
ATGATGGTTTTAGACAAATACCGTGTGAAATTCACTTTCAAAACCACTGAAAACAGAGAGTTGCCTCTCATTTTGGGGCA
GTTGCAAATCTTTTCCAAAAAAGCATTCCAAAAGGATTATTTTGCAAAAAACCCTTTGCTCATTTCTGTTTCTAGTAGCC
CTTATGTGATCGCTTCTTTTGATGTGAGCAAGAAAATCACCTACCAAAGAAACCCTAATTATTGGGCGAGGAATTTGCCT
AGCAGAAAGGGGCAATTCAATTTTGATCAAGTTAAGTTTGAATATTATAAAGATGAAACCGTCGCCTTGCAGGCTTTTTT
GAGTGGGGTGTATGATTGGTGCATTGAAAGCATGGCTAAAGTTTGGGCCAGGGGCTGCGTAGGGAAAGCCATAGAAAATA
AAGAAATCACTAAATATTTAATCGCCCACAAAATGCCAAGTGGCATGCAAGGGTTTTTTTAA

Upstream 100 bases:

>100_bases
ATCCCCCCATTTTAGCGAGCGATGTGAAATTCAGTTTTGATACGATAATCAAATTAGGATCACCTCTCTCTATCGGCAGT
ATTACTAGGATGTCAAAGAG

Downstream 100 bases:

>100_bases
CGCACGCCGTGGAATCTTTAAGGATAAAAGGGTGCATGAAACCTTATTCTATGCGTTTGATTTTGAATGGGCGAATAAAA
ACTTATTCTTTTCGCAATAC

Product: peptide ABC transporter periplasmic protein

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 153; Mature: 153

Protein sequence:

>153_residues
MMVLDKYRVKFTFKTTENRELPLILGQLQIFSKKAFQKDYFAKNPLLISVSSSPYVIASFDVSKKITYQRNPNYWARNLP
SRKGQFNFDQVKFEYYKDETVALQAFLSGVYDWCIESMAKVWARGCVGKAIENKEITKYLIAHKMPSGMQGFF

Sequences:

>Translated_153_residues
MMVLDKYRVKFTFKTTENRELPLILGQLQIFSKKAFQKDYFAKNPLLISVSSSPYVIASFDVSKKITYQRNPNYWARNLP
SRKGQFNFDQVKFEYYKDETVALQAFLSGVYDWCIESMAKVWARGCVGKAIENKEITKYLIAHKMPSGMQGFF
>Mature_153_residues
MMVLDKYRVKFTFKTTENRELPLILGQLQIFSKKAFQKDYFAKNPLLISVSSSPYVIASFDVSKKITYQRNPNYWARNLP
SRKGQFNFDQVKFEYYKDETVALQAFLSGVYDWCIESMAKVWARGCVGKAIENKEITKYLIAHKMPSGMQGFF

Specific function: Unknown

COG id: COG4166

COG function: function code E; ABC-type oligopeptide transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI87082063, Length=121, Percent_Identity=38.0165289256198, Blast_Score=87, Evalue=7e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 17857; Mature: 17857

Theoretical pI: Translated: 10.07; Mature: 10.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMVLDKYRVKFTFKTTENRELPLILGQLQIFSKKAFQKDYFAKNPLLISVSSSPYVIASF
CCEECCEEEEEEEECCCCCCCCEEEHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEEEE
DVSKKITYQRNPNYWARNLPSRKGQFNFDQVKFEYYKDETVALQAFLSGVYDWCIESMAK
CCCCEEEEECCCCHHHHCCCCCCCCCCHHHEEEEEECCHHHHHHHHHHHHHHHHHHHHHH
VWARGCVGKAIENKEITKYLIAHKMPSGMQGFF
HHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MMVLDKYRVKFTFKTTENRELPLILGQLQIFSKKAFQKDYFAKNPLLISVSSSPYVIASF
CCEECCEEEEEEEECCCCCCCCEEEHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEEEE
DVSKKITYQRNPNYWARNLPSRKGQFNFDQVKFEYYKDETVALQAFLSGVYDWCIESMAK
CCCCEEEEECCCCHHHHCCCCCCCCCCHHHEEEEEECCHHHHHHHHHHHHHHHHHHHHHH
VWARGCVGKAIENKEITKYLIAHKMPSGMQGFF
HHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA