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The map label for this gene is oppA fragment 1 [H]

Identifier: 109946853

GI number: 109946853

Start: 199533

End: 199994

Strand: Direct

Name: oppA fragment 1 [H]

Synonym: Hac_0233

Alternate gene names: 109946853

Gene position: 199533-199994 (Clockwise)

Preceding gene: 109946852

Following gene: 109946854

Centisome position: 12.84

GC content: 40.04

Gene sequence:

>462_bases
ATGAAAATTTTAGGCTTATGGTTAGGGGTTTTTGTTTTCTTAAGGCTACACCTTAATTTATACTTGGGTGAAGAGCCCAA
ATACAAAGACAATTTCACGCATTTTGAATACGCTAACCCTAACGCCAGAAAAGGCGGTGCCTTAAGAAATGACGCCATAG
GGGCTTTTGACAGCCTTAACTCTTTTGCGCTCAAAGGCACTAAAGCCGAAGACTTGGATCTCATTTATGACACTTTAATG
GTGCAAAGTTTAGACGAACCCTTTGCAGAATACCCCTTGATCGCAAAAGATGTACAAGTGGCTAAAGACAATAGCTATGT
GGTTTTTACTTTAGATGAAAGAGCGAGGCTTAGCGATAATCCCCCCATTTTAGCGAGCGATGTGAAATTCAGTTTTGATA
CGATAATCAAATTAGGATCACCTCTCTCTATCGGCAGTATTACTAGGATGTCAAAGAGATGA

Upstream 100 bases:

>100_bases
TGATGAAGTGAAAGCCATTTTAAATCATGGCGTAGAAAAAGCCAAGCCTTTAGCGAGGGCGACTTACCAAAAAGCTAAAG
AATTGATGGGGTTGGTTTAG

Downstream 100 bases:

>100_bases
TGGTTTTAGACAAATACCGTGTGAAATTCACTTTCAAAACCACTGAAAACAGAGAGTTGCCTCTCATTTTGGGGCAGTTG
CAAATCTTTTCCAAAAAAGC

Product: peptide ABC transporter periplasmic protein

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 153; Mature: 153

Protein sequence:

>153_residues
MKILGLWLGVFVFLRLHLNLYLGEEPKYKDNFTHFEYANPNARKGGALRNDAIGAFDSLNSFALKGTKAEDLDLIYDTLM
VQSLDEPFAEYPLIAKDVQVAKDNSYVVFTLDERARLSDNPPILASDVKFSFDTIIKLGSPLSIGSITRMSKR

Sequences:

>Translated_153_residues
MKILGLWLGVFVFLRLHLNLYLGEEPKYKDNFTHFEYANPNARKGGALRNDAIGAFDSLNSFALKGTKAEDLDLIYDTLM
VQSLDEPFAEYPLIAKDVQVAKDNSYVVFTLDERARLSDNPPILASDVKFSFDTIIKLGSPLSIGSITRMSKR
>Mature_153_residues
MKILGLWLGVFVFLRLHLNLYLGEEPKYKDNFTHFEYANPNARKGGALRNDAIGAFDSLNSFALKGTKAEDLDLIYDTLM
VQSLDEPFAEYPLIAKDVQVAKDNSYVVFTLDERARLSDNPPILASDVKFSFDTIIKLGSPLSIGSITRMSKR

Specific function: Unknown

COG id: COG4166

COG function: function code E; ABC-type oligopeptide transport system, periplasmic component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae hbpA [H]

Homologues:

Organism=Escherichia coli, GI87082063, Length=147, Percent_Identity=38.7755102040816, Blast_Score=108, Evalue=1e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 17194; Mature: 17194

Theoretical pI: Translated: 5.78; Mature: 5.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKILGLWLGVFVFLRLHLNLYLGEEPKYKDNFTHFEYANPNARKGGALRNDAIGAFDSLN
CCHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHCCC
SFALKGTKAEDLDLIYDTLMVQSLDEPFAEYPLIAKDVQVAKDNSYVVFTLDERARLSDN
HHEECCCCCCHHHHHHHHHHHHHHCCCHHHCCEEECCEEEECCCCEEEEEECCCCCCCCC
PPILASDVKFSFDTIIKLGSPLSIGSITRMSKR
CCEEECCCCCCHHHHHHCCCCCCCCCHHHCCCC
>Mature Secondary Structure
MKILGLWLGVFVFLRLHLNLYLGEEPKYKDNFTHFEYANPNARKGGALRNDAIGAFDSLN
CCHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHCCC
SFALKGTKAEDLDLIYDTLMVQSLDEPFAEYPLIAKDVQVAKDNSYVVFTLDERARLSDN
HHEECCCCCCHHHHHHHHHHHHHHCCCHHHCCEEECCEEEECCCCEEEEEECCCCCCCCC
PPILASDVKFSFDTIIKLGSPLSIGSITRMSKR
CCEEECCCCCCHHHHHHCCCCCCCCCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 9097040 [H]