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The map label for this gene is comB3 [H]

Identifier: 109946687

GI number: 109946687

Start: 50858

End: 51994

Strand: Direct

Name: comB3 [H]

Synonym: Hac_0054

Alternate gene names: 109946687

Gene position: 50858-51994 (Clockwise)

Preceding gene: 109946686

Following gene: 109946688

Centisome position: 3.27

GC content: 40.19

Gene sequence:

>1137_bases
ATGAATAAGTGGCTCAAGGGGGCACTTATTGTTGTAGGGGGTTTTATAACGATTGTAACAACCTCTTTAATCTACCACCA
AAAGCCAAAAGCCCCCTTAAACAACCAACCCACTCTTTTAAATGATGATGAGGTGAAATACCCCCTACAAGATTACACTT
TCACTCCAAGCTTACAACCAACCCATACAGAAAGCTCCAAAGACGCTACTATAAAAGCCTTACAGCACCAACTAGAAGTC
GCTCTCAAAACCTTAAACGCCCAAAAAATGAATATTCCTAAAGAAGAAACTAAAGAACCCAACAATCCTCCCATAGAGCC
TCAAACAAAACCAACTAAAAAAGACGTTTCTTTAAAACAATTAGATTTATTAGCCGCTCGCATCACTCCTTTTAAACAAA
GCCCTAAAAATTACGAAGAAAACTTGATTTTCCCAATGGATAACCCTAAAGGGATCGATGGCTTTACTAACCTTAAAGAA
AAAGACATTGCCACTAATGAAAACAGGCTTTTACGCACCATTACAGCGGATAAAATGATACCCGCTTTTTTGATCACGCC
TATTTCTAGCCAGATCGCTGGTAAAGTCATTGCACAAGTGGAGAGCGATATTTTTGCGAGCATGGGCAAGGCTGTTTTAA
TCCCTAAAGGCTCTAAAGTTATAGGTTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTGTGGAGT
CGCATCATCACCCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGATTAGT
GGGGGAATTGATTGAAAGGAATTTTCAACGCTATGGCGTGCCTTTATTGCTTTCTACGCTCACTAACGGCTTGTTGATTG
GGATCACTTCCGCTTTAAACAACAAAGGCAATAAAGAAGAGACGACTAATTTCTTTGGGGATTATCTTTTATTGCAATTG
ATGAGGCAAAGCGGTATGGGGATCAATCAAGTGGTCAATCAAATTTTGAGAGACAAGAGCAAAATCGCCCCCATTGTTAT
CATTAGAGAGGGGAGTAGGGTATTCATTTCGCCTAATACTGACATTTTCTTCCCTATACCCAGAGACAATGAAGTCATCG
CTGAGTTTTTGAAGTGA

Upstream 100 bases:

>100_bases
ATTGTGGGCGATTATATTATCGCTGAAGATGTTTCGGCTAAATGGACTTTAAGGTTGGGTAAGGGCTATTTGTGTATCCG
TTTTATAAAAAAGGGTAGAG

Downstream 100 bases:

>100_bases
TAAATGCTGTGTTAAAAACGCTATAATAACCCTAAAAGCAAAAGAGAGCATGACAAGAAAGCCCATGAAAATCAAACATA
TCTTACTGAGTGGGGGGAGT

Product: ComB3 protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 378; Mature: 378

Protein sequence:

>378_residues
MNKWLKGALIVVGGFITIVTTSLIYHQKPKAPLNNQPTLLNDDEVKYPLQDYTFTPSLQPTHTESSKDATIKALQHQLEV
ALKTLNAQKMNIPKEETKEPNNPPIEPQTKPTKKDVSLKQLDLLAARITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENRLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFASMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNKGNKEETTNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVIIREGSRVFISPNTDIFFPIPRDNEVIAEFLK

Sequences:

>Translated_378_residues
MNKWLKGALIVVGGFITIVTTSLIYHQKPKAPLNNQPTLLNDDEVKYPLQDYTFTPSLQPTHTESSKDATIKALQHQLEV
ALKTLNAQKMNIPKEETKEPNNPPIEPQTKPTKKDVSLKQLDLLAARITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENRLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFASMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNKGNKEETTNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVIIREGSRVFISPNTDIFFPIPRDNEVIAEFLK
>Mature_378_residues
MNKWLKGALIVVGGFITIVTTSLIYHQKPKAPLNNQPTLLNDDEVKYPLQDYTFTPSLQPTHTESSKDATIKALQHQLEV
ALKTLNAQKMNIPKEETKEPNNPPIEPQTKPTKKDVSLKQLDLLAARITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENRLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFASMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNKGNKEETTNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVIIREGSRVFISPNTDIFFPIPRDNEVIAEFLK

Specific function: Unknown

COG id: COG2948

COG function: function code U; Type IV secretory pathway, VirB10 components

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the trbI/virB10 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005498 [H]

Pfam domain/function: PF03743 TrbI [H]

EC number: NA

Molecular weight: Translated: 42214; Mature: 42214

Theoretical pI: Translated: 9.86; Mature: 9.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKWLKGALIVVGGFITIVTTSLIYHQKPKAPLNNQPTLLNDDEVKYPLQDYTFTPSLQP
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCCCCCCCEECCCCCC
THTESSKDATIKALQHQLEVALKTLNAQKMNIPKEETKEPNNPPIEPQTKPTKKDVSLKQ
CCCCCCCHHHHHHHHHHHHHHHHHHCCHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCHHH
LDLLAARITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKEKDIATNENRLLRTITADKMI
HHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHCCCCCCCCEEEEHHHHHHC
PAFLITPISSQIAGKVIAQVESDIFASMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
HHHEECCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEEEEEECCCCCCCEEHEEHHH
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALN
HHCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCEEEEEHHHHC
NKGNKEETTNFFGDYLLLQLMRQSGMGINQVVNQILRDKSKIAPIVIIREGSRVFISPNT
CCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEECCCEEEECCCC
DIFFPIPRDNEVIAEFLK
CEEEECCCCHHHHHHHHC
>Mature Secondary Structure
MNKWLKGALIVVGGFITIVTTSLIYHQKPKAPLNNQPTLLNDDEVKYPLQDYTFTPSLQP
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCCCCCCCEECCCCCC
THTESSKDATIKALQHQLEVALKTLNAQKMNIPKEETKEPNNPPIEPQTKPTKKDVSLKQ
CCCCCCCHHHHHHHHHHHHHHHHHHCCHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCHHH
LDLLAARITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKEKDIATNENRLLRTITADKMI
HHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHCCCCCCCCEEEEHHHHHHC
PAFLITPISSQIAGKVIAQVESDIFASMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
HHHEECCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEEEEEECCCCCCCEEHEEHHH
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALN
HHCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCEEEEEHHHHC
NKGNKEETTNFFGDYLLLQLMRQSGMGINQVVNQILRDKSKIAPIVIIREGSRVFISPNT
CCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEECCCEEEECCCC
DIFFPIPRDNEVIAEFLK
CEEEECCCCHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8763954 [H]