Click here to switch to the map view.

The map label for this gene is omp1 fragment 4

Identifier: 109946670

GI number: 109946670

Start: 37610

End: 37750

Strand: Reverse

Name: omp1 fragment 4

Synonym: Hac_0035

Alternate gene names: NA

Gene position: 37750-37610 (Counterclockwise)

Preceding gene: 109946671

Following gene: 109946665

Centisome position: 2.43

GC content: 39.72

Gene sequence:

>141_bases
ATGAATGGGATCGGTTTTCAAGTGGGCTATAAGCAATTTTTTGGCAAAAAGAAACGATGGGGCACTAGATATTATGGCTT
TGTGGATTACAACCATGCCTATACCAAATCCCAATTTTTCAATGCCGCTTCTGAGGTTTGA

Upstream 100 bases:

>100_bases
ACCAAAACGCTTACAATCAAATGCAAGTGCTGCACAACAATTAGCCAACAACCCTTTTAGAAGCGTAGTAAGGATTAGCT
CTCAAAACAACAACGGTGCG

Downstream 100 bases:

>100_bases
ACTTATGGCGTGGGCACGGACGCTCTCTATAATTCATCAACGACAAAGCCACCAACTTTTAGGTAAAAACAACAAGCTCT
CTGTGGGGGTTTATGGCGGT

Product: outer membrane protein 1 fragment 4

Products: NA

Alternate protein names: Outer Membrane Protein HopQ; Outer Membrane Protein HopZ; Outer Membrane Protein/Porin; Outer Membrane Protein SabB/HopO; Outer Membrane Protein HopA; Outer Membrane Protein BabA; Outer Membrane Protein HopD; Outer Membrane Function; Adhesin

Number of amino acids: Translated: 46; Mature: 46

Protein sequence:

>46_residues
MNGIGFQVGYKQFFGKKKRWGTRYYGFVDYNHAYTKSQFFNAASEV

Sequences:

>Translated_46_residues
MNGIGFQVGYKQFFGKKKRWGTRYYGFVDYNHAYTKSQFFNAASEV
>Mature_46_residues
MNGIGFQVGYKQFFGKKKRWGTRYYGFVDYNHAYTKSQFFNAASEV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 5438; Mature: 5438

Theoretical pI: Translated: 10.25; Mature: 10.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNGIGFQVGYKQFFGKKKRWGTRYYGFVDYNHAYTKSQFFNAASEV
CCCCCCCCCHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHCCCC
>Mature Secondary Structure
MNGIGFQVGYKQFFGKKKRWGTRYYGFVDYNHAYTKSQFFNAASEV
CCCCCCCCCHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA