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The map label for this gene is dcuB [H]

Identifier: 108810975

GI number: 108810975

Start: 939875

End: 940186

Strand: Reverse

Name: dcuB [H]

Synonym: YPN_0810

Alternate gene names: 108810975

Gene position: 940186-939875 (Counterclockwise)

Preceding gene: 108810976

Following gene: 108810974

Centisome position: 20.73

GC content: 47.12

Gene sequence:

>312_bases
TTGTTGGGCGCTTTTGCAGACCTGCGCCCTGCTTTTGAAGTTAAAGGCAAGTTACAGTCTTTGTCGATGAATCTGGTGAT
TCAGATGATGATGCTGATCGCCGGTGCCGTTATTTTGATTGGCTGCAAAGTCAAACCCAGTGATATCTCTAACGGTGCCG
TATTCAAAGCCGGAATGGTTGCTATCTTCTCGGTATTCGGCGTTGCCTGGATGAGTGACACCTTCTTCCAGGCTCATATG
GGTGAACTGAGATTAGTACTGGAAGATGTGGTAAAAGCCACCCTTGGACTTATGCCATTGTGCTGTTCTTAG

Upstream 100 bases:

>100_bases
ATATATATATGGCTCAACAGATACGTTACTGAATCAGGTTTTTCCAAAACAAGCTTATTGGTCAACTTGGATATTCTTTG
CCGCTATCGTCATTGTCGTC

Downstream 100 bases:

>100_bases
TCTCGAAGCTGGTGAACAGCCAAGCCGCGGCGCTAGCAGCGATCGCACCAATGGGCTTACAATTAGGCGTTGAACCTAAG
ATGCTCATCGCATTTTTCCC

Product: Dcu family anaerobic C4-dicarboxylate transporter

Products: C4-dicarboxylates [Periplasm]; C4-dicarboxylates [Periplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 103; Mature: 103

Protein sequence:

>103_residues
MLGAFADLRPAFEVKGKLQSLSMNLVIQMMMLIAGAVILIGCKVKPSDISNGAVFKAGMVAIFSVFGVAWMSDTFFQAHM
GELRLVLEDVVKATLGLMPLCCS

Sequences:

>Translated_103_residues
MLGAFADLRPAFEVKGKLQSLSMNLVIQMMMLIAGAVILIGCKVKPSDISNGAVFKAGMVAIFSVFGVAWMSDTFFQAHM
GELRLVLEDVVKATLGLMPLCCS
>Mature_103_residues
MLGAFADLRPAFEVKGKLQSLSMNLVIQMMMLIAGAVILIGCKVKPSDISNGAVFKAGMVAIFSVFGVAWMSDTFFQAHM
GELRLVLEDVVKATLGLMPLCCS

Specific function: Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane [H]

COG id: COG2704

COG function: function code R; Anaerobic C4-dicarboxylate transporter

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dcuA/dcuB transporter (TC 2.A.13.1) family [H]

Homologues:

Organism=Escherichia coli, GI1790565, Length=92, Percent_Identity=52.1739130434783, Blast_Score=93, Evalue=4e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004668 [H]

Pfam domain/function: PF03605 DcuA_DcuB [H]

EC number: NA

Molecular weight: Translated: 11043; Mature: 11043

Theoretical pI: Translated: 8.06; Mature: 8.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
8.7 %Met     (Translated Protein)
11.7 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
8.7 %Met     (Mature Protein)
11.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLGAFADLRPAFEVKGKLQSLSMNLVIQMMMLIAGAVILIGCKVKPSDISNGAVFKAGMV
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
AIFSVFGVAWMSDTFFQAHMGELRLVLEDVVKATLGLMPLCCS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MLGAFADLRPAFEVKGKLQSLSMNLVIQMMMLIAGAVILIGCKVKPSDISNGAVFKAGMV
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
AIFSVFGVAWMSDTFFQAHMGELRLVLEDVVKATLGLMPLCCS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: C4-dicarboxylates [Periplasm]; C4-dicarboxylates [Periplasm] [C]

Specific reaction: C4-dicarboxylates [Periplasm] + C4-dicarboxylates [Periplasm] = C4-dicarboxylates [Periplasm] + C4-dicarboxylates [Periplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]