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The map label for this gene is yfdE [H]

Identifier: 108801366

GI number: 108801366

Start: 4681746

End: 4682960

Strand: Reverse

Name: yfdE [H]

Synonym: Mmcs_4403

Alternate gene names: 108801366

Gene position: 4682960-4681746 (Counterclockwise)

Preceding gene: 108801367

Following gene: 108801365

Centisome position: 82.08

GC content: 68.56

Gene sequence:

>1215_bases
ATGAGCGGCCCGCTGGAGGGGGTGCGCGTGGTCGACCTCACCGCGATGGTGATGGGTCCGTACTGCACCCAGATCATGGC
GGACATGGGCGCCGACGTGGTGAAGGTCGAACCGCCGGAGGGGGACAACACCCGCTTCATCTCCGTCGGCCCCGCCCCCG
GGATGAGCGGGGTGTTCGTCAACGTCAACCGCGGTAAGCGCGGCATCGTGCTGAACCTGCGCACCGAGGAGGGCAAGGCG
GCGTTGCGAGCGCTGATCGCCGAGGCCGACGTGTTCATCCACTCGATGCGCGCCAAGGCCATCGCCAAGCTCGGACTCGG
CTACGACGACGTCGCCGCGCTGAAGCCCGACATCGTCTACACCAACTGCTACGGCTACGGGCGGCGCGGCCCGGACCGGG
ACCTGCCCGCCTACGACGACACCATCCAGGCCGAATGCGGTATCCCCGCCGTACAGGAACAACTCACCGGCGAGGCCAAC
TACGTCGGCACCATCATGGCCGACAAGGTCGCGGGTCTGACCGCGCTGTACGCCACCATGATGGCGCTGTTCCACCGGGA
GCGCACGGGCGAGGGGCAGGAGGTCGAGGTCGCCATGTTCGAGACGATGGCCGCCTTCATGCTCGTCGAACACGCCAACG
GCGCCATGTTCGACCCCCCGCTCGGCCCCGCGGTGTATCCGCGCACCGTCGCACCCAACCGCAGGCCGTACGAGACGAAA
GACGGTTACATCGCCGCGCTGATCTACAACGACAAACACTGGAACGCCTTCGTCGAGGCGGTGAAACCGGTGTGGGACAA
CCACTTGTACGGCACCCTCGAACGGCGGGCGAAGCAGATCGACACCGTCTACGGCCTGGTGGCCGAGACACTCAAGGAGC
GCACCACCGACGAGTGGCTGGCGTTGTTCCGCGAGTTGGAGATCCCCGCCGCCCCGATCCGGACGCCCGGGGCGCTGTTC
GACCACCCGCACCTCAACGCCGTCGGACTGTTCGAGACCGTCGAGACGCCGAACGGGCCGGTGCGCTTCCCCGGTGTGCC
GACGTGGTTCTCGCGCACGCCGGGCCACGTGCGGGGGCCCGCGCCGGAGTTGGGCGCCGACACCGCCGCGGTCCTCGACG
AGCTGGGCCTGAGCCGCGCCGAGCCTCCGGTTGTTGACGGGAATCCCGCGGATCTCGTCGACAACCGTAGTGTCGGCGCC
GCGGAGCTGGGATGA

Upstream 100 bases:

>100_bases
GCGACCGTTCACACCCCGTGGTGTTCCCGGTGGTGCCCGACGGCCACAACGCCCACATCCGCTACAGCTTCGCGATGGCC
GCCCAGAAGGCGGGGACCTG

Downstream 100 bases:

>100_bases
GCATGGACTTCGACATGGGGCCGCGCGCCGCCGAATTGCGCAGCCGCCTGAGGGAGCTCGTCAGCGAGCACGTTCCCGAG
CACTTCCTGGGCGCGTTCAC

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 404; Mature: 403

Protein sequence:

>404_residues
MSGPLEGVRVVDLTAMVMGPYCTQIMADMGADVVKVEPPEGDNTRFISVGPAPGMSGVFVNVNRGKRGIVLNLRTEEGKA
ALRALIAEADVFIHSMRAKAIAKLGLGYDDVAALKPDIVYTNCYGYGRRGPDRDLPAYDDTIQAECGIPAVQEQLTGEAN
YVGTIMADKVAGLTALYATMMALFHRERTGEGQEVEVAMFETMAAFMLVEHANGAMFDPPLGPAVYPRTVAPNRRPYETK
DGYIAALIYNDKHWNAFVEAVKPVWDNHLYGTLERRAKQIDTVYGLVAETLKERTTDEWLALFRELEIPAAPIRTPGALF
DHPHLNAVGLFETVETPNGPVRFPGVPTWFSRTPGHVRGPAPELGADTAAVLDELGLSRAEPPVVDGNPADLVDNRSVGA
AELG

Sequences:

>Translated_404_residues
MSGPLEGVRVVDLTAMVMGPYCTQIMADMGADVVKVEPPEGDNTRFISVGPAPGMSGVFVNVNRGKRGIVLNLRTEEGKA
ALRALIAEADVFIHSMRAKAIAKLGLGYDDVAALKPDIVYTNCYGYGRRGPDRDLPAYDDTIQAECGIPAVQEQLTGEAN
YVGTIMADKVAGLTALYATMMALFHRERTGEGQEVEVAMFETMAAFMLVEHANGAMFDPPLGPAVYPRTVAPNRRPYETK
DGYIAALIYNDKHWNAFVEAVKPVWDNHLYGTLERRAKQIDTVYGLVAETLKERTTDEWLALFRELEIPAAPIRTPGALF
DHPHLNAVGLFETVETPNGPVRFPGVPTWFSRTPGHVRGPAPELGADTAAVLDELGLSRAEPPVVDGNPADLVDNRSVGA
AELG
>Mature_403_residues
SGPLEGVRVVDLTAMVMGPYCTQIMADMGADVVKVEPPEGDNTRFISVGPAPGMSGVFVNVNRGKRGIVLNLRTEEGKAA
LRALIAEADVFIHSMRAKAIAKLGLGYDDVAALKPDIVYTNCYGYGRRGPDRDLPAYDDTIQAECGIPAVQEQLTGEANY
VGTIMADKVAGLTALYATMMALFHRERTGEGQEVEVAMFETMAAFMLVEHANGAMFDPPLGPAVYPRTVAPNRRPYETKD
GYIAALIYNDKHWNAFVEAVKPVWDNHLYGTLERRAKQIDTVYGLVAETLKERTTDEWLALFRELEIPAAPIRTPGALFD
HPHLNAVGLFETVETPNGPVRFPGVPTWFSRTPGHVRGPAPELGADTAAVLDELGLSRAEPPVVDGNPADLVDNRSVGAA
ELG

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=385, Percent_Identity=29.6103896103896, Blast_Score=165, Evalue=7e-41,
Organism=Homo sapiens, GI300863124, Length=412, Percent_Identity=28.1553398058252, Blast_Score=154, Evalue=2e-37,
Organism=Homo sapiens, GI300863126, Length=376, Percent_Identity=27.6595744680851, Blast_Score=137, Evalue=2e-32,
Organism=Homo sapiens, GI42794625, Length=417, Percent_Identity=26.6187050359712, Blast_Score=120, Evalue=3e-27,
Organism=Homo sapiens, GI266456254, Length=416, Percent_Identity=26.4423076923077, Blast_Score=120, Evalue=3e-27,
Organism=Homo sapiens, GI13376042, Length=412, Percent_Identity=25.4854368932039, Blast_Score=113, Evalue=4e-25,
Organism=Homo sapiens, GI266458393, Length=248, Percent_Identity=30.6451612903226, Blast_Score=99, Evalue=7e-21,
Organism=Homo sapiens, GI266458397, Length=248, Percent_Identity=30.6451612903226, Blast_Score=98, Evalue=1e-20,
Organism=Homo sapiens, GI42822893, Length=135, Percent_Identity=31.8518518518519, Blast_Score=76, Evalue=5e-14,
Organism=Homo sapiens, GI266458395, Length=135, Percent_Identity=31.8518518518519, Blast_Score=76, Evalue=6e-14,
Organism=Escherichia coli, GI87082093, Length=358, Percent_Identity=30.1675977653631, Blast_Score=163, Evalue=1e-41,
Organism=Escherichia coli, GI1788717, Length=418, Percent_Identity=28.4688995215311, Blast_Score=144, Evalue=1e-35,
Organism=Escherichia coli, GI1786222, Length=398, Percent_Identity=28.1407035175879, Blast_Score=108, Evalue=7e-25,
Organism=Caenorhabditis elegans, GI115535051, Length=319, Percent_Identity=23.8244514106583, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI32564160, Length=320, Percent_Identity=24.0625, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24648431, Length=386, Percent_Identity=29.7927461139896, Blast_Score=160, Evalue=1e-39,
Organism=Drosophila melanogaster, GI24585488, Length=384, Percent_Identity=25.5208333333333, Blast_Score=101, Evalue=9e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 43746; Mature: 43615

Theoretical pI: Translated: 4.71; Mature: 4.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGPLEGVRVVDLTAMVMGPYCTQIMADMGADVVKVEPPEGDNTRFISVGPAPGMSGVFV
CCCCCCCEEEEEHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCEEEEEECCCCCCCEEEE
NVNRGKRGIVLNLRTEEGKAALRALIAEADVFIHSMRAKAIAKLGLGYDDVAALKPDIVY
EECCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCEEE
TNCYGYGRRGPDRDLPAYDDTIQAECGIPAVQEQLTGEANYVGTIMADKVAGLTALYATM
EECCCCCCCCCCCCCCCCCCCEECCCCCHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHH
MALFHRERTGEGQEVEVAMFETMAAFMLVEHANGAMFDPPLGPAVYPRTVAPNRRPYETK
HHHHHHHCCCCCCEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
DGYIAALIYNDKHWNAFVEAVKPVWDNHLYGTLERRAKQIDTVYGLVAETLKERTTDEWL
CCEEEEEEECCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
ALFRELEIPAAPIRTPGALFDHPHLNAVGLFETVETPNGPVRFPGVPTWFSRTPGHVRGP
HHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCEECCCCCHHHCCCCCCCCCC
APELGADTAAVLDELGLSRAEPPVVDGNPADLVDNRSVGAAELG
CCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCC
>Mature Secondary Structure 
SGPLEGVRVVDLTAMVMGPYCTQIMADMGADVVKVEPPEGDNTRFISVGPAPGMSGVFV
CCCCCCEEEEEHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCEEEEEECCCCCCCEEEE
NVNRGKRGIVLNLRTEEGKAALRALIAEADVFIHSMRAKAIAKLGLGYDDVAALKPDIVY
EECCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCEEE
TNCYGYGRRGPDRDLPAYDDTIQAECGIPAVQEQLTGEANYVGTIMADKVAGLTALYATM
EECCCCCCCCCCCCCCCCCCCEECCCCCHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHH
MALFHRERTGEGQEVEVAMFETMAAFMLVEHANGAMFDPPLGPAVYPRTVAPNRRPYETK
HHHHHHHCCCCCCEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
DGYIAALIYNDKHWNAFVEAVKPVWDNHLYGTLERRAKQIDTVYGLVAETLKERTTDEWL
CCEEEEEEECCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
ALFRELEIPAAPIRTPGALFDHPHLNAVGLFETVETPNGPVRFPGVPTWFSRTPGHVRGP
HHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCEECCCCCHHHCCCCCCCCCC
APELGADTAAVLDELGLSRAEPPVVDGNPADLVDNRSVGAAELG
CCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]