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The map label for this gene is yfdE [H]

Identifier: 108801033

GI number: 108801033

Start: 4337183

End: 4338274

Strand: Reverse

Name: yfdE [H]

Synonym: Mmcs_4069

Alternate gene names: 108801033

Gene position: 4338274-4337183 (Counterclockwise)

Preceding gene: 108801036

Following gene: 108801032

Centisome position: 76.04

GC content: 68.96

Gene sequence:

>1092_bases
ATGGCGGGACCACTGCAGGGACTGCGTGTCGTGGAATTGGCCGGTATCGGTCCTGGTCCGCACGCGGCGATGATCCTCGG
CGACCTGGGTGCGGACGTCGTCCGCATCGAGCGCCCCGGCAAGGGACCCGGTATCCCGACGAAGGGCAGCGACCAACTGC
TCCGTAACCGTCGATCGGTCGGCGCCAACCTCAAGACCGACGAGGGCCGCGAGCTGGTGCTGCGGCTGATCGCCAAGGCC
GACGTGCTCATCGAGGGCTTCCGCCCCGGTGTCACCGAGCGCCTCGGACTGGGCCCGGAGGATTGCGCGAAGGTCAACGA
ACGCCTGATCTACGGCCGGATGACGGGCTGGGGTCAGACGGGTCCGCGCAGTCAGCAGGCCGGTCACGACATCAACTACA
TCTCGCTCAACGGTGTGCTGCACGCCGTCGGCCGCGCCGGCGAGCGGCCGGTGCCGCCGCTGAACCTCGCGGGCGACTTC
GGCGGTGGGTCCATGTTCCTGCTCGTCGGCATCCTCGCCGCGCTGTGGGAGCGGGAACGCTCCGGTAAGGGTCAGGTCGT
CGATGCGGCCATGGTCGACGGCTCCAGCGTGCTCGCGCAGATGATGTGGGCGTTCCGCGCGATGGGCATGTGGTCCGACG
AGCGCGGCGTCAACATGCTCGACACCGGTGCGCCCTACTACGACACCTATGAGACCTCCGACGGCCGCTACGTCGCGGTC
GGCGCGATCGAACCGCAGTTCTACGCCGAGATGCTCGACAAACTCGGCCTCGATCCGGCCGGACTGCCCGACCAGAACGA
CATGAGCCGCTGGCCCGAACTTCGCGCCGTGCTCACCAAGGCGTTCGCCGAACACGACCGCGACCACTGGGCGAAGGTGT
TCACCGGCAGCGACGCGTGCGTCACGCCGGTGCTGTCCTTCGGCGAGGTGGAAGCCGAACCGCACAACACCGAACGCGAC
ACCTTCTACCGCGAGGGCGACTTCCTGTTCCCGGCGCCCGCGCCGCGGTTCTCCCGGACCACGACAACGACGCCGACGCC
GCCCGGCGTGCCCGGCGCCGACACCGAAGCGGTCCTCAACGACTGGGTCTGA

Upstream 100 bases:

>100_bases
TGGCTACACCTTCGCATGAGGGGCCGATAGCCCGTGGCCGGTCGAGAAGGTTATACAAGTAAGCTATGTCGCGGTCAACT
ACTCCGAAGGGGCGGTAGAA

Downstream 100 bases:

>100_bases
TCTCAAGGTCTGATTCGAACGGTCGATCTCAACCAACAGAAAGGTATGTGCGAGTGGAAATCAAAGACGCCGCCGCCGTC
GTCACCGGCGGAGCATCGGG

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 363; Mature: 362

Protein sequence:

>363_residues
MAGPLQGLRVVELAGIGPGPHAAMILGDLGADVVRIERPGKGPGIPTKGSDQLLRNRRSVGANLKTDEGRELVLRLIAKA
DVLIEGFRPGVTERLGLGPEDCAKVNERLIYGRMTGWGQTGPRSQQAGHDINYISLNGVLHAVGRAGERPVPPLNLAGDF
GGGSMFLLVGILAALWERERSGKGQVVDAAMVDGSSVLAQMMWAFRAMGMWSDERGVNMLDTGAPYYDTYETSDGRYVAV
GAIEPQFYAEMLDKLGLDPAGLPDQNDMSRWPELRAVLTKAFAEHDRDHWAKVFTGSDACVTPVLSFGEVEAEPHNTERD
TFYREGDFLFPAPAPRFSRTTTTTPTPPGVPGADTEAVLNDWV

Sequences:

>Translated_363_residues
MAGPLQGLRVVELAGIGPGPHAAMILGDLGADVVRIERPGKGPGIPTKGSDQLLRNRRSVGANLKTDEGRELVLRLIAKA
DVLIEGFRPGVTERLGLGPEDCAKVNERLIYGRMTGWGQTGPRSQQAGHDINYISLNGVLHAVGRAGERPVPPLNLAGDF
GGGSMFLLVGILAALWERERSGKGQVVDAAMVDGSSVLAQMMWAFRAMGMWSDERGVNMLDTGAPYYDTYETSDGRYVAV
GAIEPQFYAEMLDKLGLDPAGLPDQNDMSRWPELRAVLTKAFAEHDRDHWAKVFTGSDACVTPVLSFGEVEAEPHNTERD
TFYREGDFLFPAPAPRFSRTTTTTPTPPGVPGADTEAVLNDWV
>Mature_362_residues
AGPLQGLRVVELAGIGPGPHAAMILGDLGADVVRIERPGKGPGIPTKGSDQLLRNRRSVGANLKTDEGRELVLRLIAKAD
VLIEGFRPGVTERLGLGPEDCAKVNERLIYGRMTGWGQTGPRSQQAGHDINYISLNGVLHAVGRAGERPVPPLNLAGDFG
GGSMFLLVGILAALWERERSGKGQVVDAAMVDGSSVLAQMMWAFRAMGMWSDERGVNMLDTGAPYYDTYETSDGRYVAVG
AIEPQFYAEMLDKLGLDPAGLPDQNDMSRWPELRAVLTKAFAEHDRDHWAKVFTGSDACVTPVLSFGEVEAEPHNTERDT
FYREGDFLFPAPAPRFSRTTTTTPTPPGVPGADTEAVLNDWV

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI42794625, Length=364, Percent_Identity=46.1538461538462, Blast_Score=331, Evalue=5e-91,
Organism=Homo sapiens, GI266456254, Length=364, Percent_Identity=46.1538461538462, Blast_Score=331, Evalue=7e-91,
Organism=Homo sapiens, GI266458393, Length=252, Percent_Identity=50, Blast_Score=258, Evalue=5e-69,
Organism=Homo sapiens, GI266458397, Length=250, Percent_Identity=50.8, Blast_Score=256, Evalue=2e-68,
Organism=Homo sapiens, GI300863128, Length=386, Percent_Identity=30.5699481865285, Blast_Score=166, Evalue=3e-41,
Organism=Homo sapiens, GI300863124, Length=412, Percent_Identity=28.3980582524272, Blast_Score=157, Evalue=1e-38,
Organism=Homo sapiens, GI300863126, Length=386, Percent_Identity=28.2383419689119, Blast_Score=133, Evalue=3e-31,
Organism=Homo sapiens, GI266458395, Length=134, Percent_Identity=48.5074626865672, Blast_Score=126, Evalue=3e-29,
Organism=Homo sapiens, GI42822893, Length=134, Percent_Identity=48.5074626865672, Blast_Score=126, Evalue=3e-29,
Organism=Homo sapiens, GI13376042, Length=412, Percent_Identity=25.4854368932039, Blast_Score=117, Evalue=2e-26,
Organism=Escherichia coli, GI87082093, Length=368, Percent_Identity=27.445652173913, Blast_Score=132, Evalue=3e-32,
Organism=Escherichia coli, GI1788717, Length=217, Percent_Identity=35.4838709677419, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1786222, Length=338, Percent_Identity=26.3313609467456, Blast_Score=76, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI32564160, Length=336, Percent_Identity=35.7142857142857, Blast_Score=212, Evalue=3e-55,
Organism=Caenorhabditis elegans, GI115535051, Length=343, Percent_Identity=35.2769679300292, Blast_Score=209, Evalue=2e-54,
Organism=Drosophila melanogaster, GI24585488, Length=347, Percent_Identity=45.2449567723343, Blast_Score=302, Evalue=3e-82,
Organism=Drosophila melanogaster, GI24648431, Length=390, Percent_Identity=29.2307692307692, Blast_Score=142, Evalue=5e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 39198; Mature: 39067

Theoretical pI: Translated: 4.84; Mature: 4.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGPLQGLRVVELAGIGPGPHAAMILGDLGADVVRIERPGKGPGIPTKGSDQLLRNRRSV
CCCCCCCCEEEEEECCCCCCCCEEEEECCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHH
GANLKTDEGRELVLRLIAKADVLIEGFRPGVTERLGLGPEDCAKVNERLIYGRMTGWGQT
CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHHHEEEEECCCCCCC
GPRSQQAGHDINYISLNGVLHAVGRAGERPVPPLNLAGDFGGGSMFLLVGILAALWERER
CCCCHHCCCCCCEEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC
SGKGQVVDAAMVDGSSVLAQMMWAFRAMGMWSDERGVNMLDTGAPYYDTYETSDGRYVAV
CCCCCEEEEEHHCCHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCEECCCCCEEEE
GAIEPQFYAEMLDKLGLDPAGLPDQNDMSRWPELRAVLTKAFAEHDRDHWAKVFTGSDAC
ECCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHEECCCCHH
VTPVLSFGEVEAEPHNTERDTFYREGDFLFPAPAPRFSRTTTTTPTPPGVPGADTEAVLN
HHHHHHCCCCCCCCCCCCCCCEEECCCEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
DWV
CCC
>Mature Secondary Structure 
AGPLQGLRVVELAGIGPGPHAAMILGDLGADVVRIERPGKGPGIPTKGSDQLLRNRRSV
CCCCCCCEEEEEECCCCCCCCEEEEECCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHH
GANLKTDEGRELVLRLIAKADVLIEGFRPGVTERLGLGPEDCAKVNERLIYGRMTGWGQT
CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHHHEEEEECCCCCCC
GPRSQQAGHDINYISLNGVLHAVGRAGERPVPPLNLAGDFGGGSMFLLVGILAALWERER
CCCCHHCCCCCCEEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC
SGKGQVVDAAMVDGSSVLAQMMWAFRAMGMWSDERGVNMLDTGAPYYDTYETSDGRYVAV
CCCCCEEEEEHHCCHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCEECCCCCEEEE
GAIEPQFYAEMLDKLGLDPAGLPDQNDMSRWPELRAVLTKAFAEHDRDHWAKVFTGSDAC
ECCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHEECCCCHH
VTPVLSFGEVEAEPHNTERDTFYREGDFLFPAPAPRFSRTTTTTPTPPGVPGADTEAVLN
HHHHHHCCCCCCCCCCCCCCCEEECCCEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
DWV
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]