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The map label for this gene is glxA [H]

Identifier: 108800349

GI number: 108800349

Start: 3585860

End: 3586822

Strand: Reverse

Name: glxA [H]

Synonym: Mmcs_3383

Alternate gene names: 108800349

Gene position: 3586822-3585860 (Counterclockwise)

Preceding gene: 108800352

Following gene: 108800345

Centisome position: 62.87

GC content: 73.1

Gene sequence:

>963_bases
ATGCACACCGTCGCGGTCCTGGCCCTGCCGGACGTCATCGCCTTCGACCTCGCCACCGCCGTGGAGGTGTTCGGCCGCGC
CCGAAAAACCGATGGCACAACGGCTTACGACGTTCGGGTCTGCGCCACCGCAGCGCAGGTCGACGCCGGGCCGCTGCGCA
TCGGCACCGACCACGGCATCGACGCGCTGGCCGACGCCGACACGATCGTGGTGCCGGGCTGCAACGACATCGGCGCCGAG
GCGCCCGCCGACGTGCTGGAGACGTTGCGCGCCGCGCACGCCGCGGGTGCGCGGGTCGCGTCGATCTGCACCGGCGCCTT
CACGGTGGCCGCGGCGGGGTTGCTCGACGGCAGGCGGGCCACCACCCACTGGATGGCCGCCGACGCGTTCCGCGCCGCGT
TCCCGGCCGTGCATCTGGACCCGGACGTGCTCTACGTCGACGAGGGACAGGTGCTGACCTCGGCAGGCGCGTCGGCGGGT
CTGGACCTGTGCCTGCACATGGTGGCGCGCGACCACGGCGCCGCGGTGGCCGCGGACTCCGCCCGCATGGCGGTCGCACC
CCTGCACCGCGGCGGCGGGCAGGCGCAGTTCATCCTGCGCAACCGGGCGGCCACCGGTCCGCTCGCCGAACACACCCGCC
TCGACGGCGTACTGGCCTGGCTCGAAGAGCACGCCCACCGGGACCTGACGCTCGCCGACATCGCGCAGTACGCGTCGATG
AGCGTGCGCACGCTGAACCGGCGCTTTCAGGCCGAGACCGGTCAGACCCCGATGCAGTGGGTGACCGGGGTGCGGGTCCG
GCACGCCCAGCAACTCCTGGAGACCACCGGTTTCGGCGTCGAACGCGTCGGCCGCCAGGTCGGGTTCAGCTCACCGGCGA
ACTTCCGCGAACAGTTCCGCCGGCTCACCGGCGTCGCACCGCTGAGCTACCGCAACACGTTCCGGGAGCGCGTCGCCGGC
TGA

Upstream 100 bases:

>100_bases
ATCCATGCCGACCAGCGTGCCCGCGCCGGCTGCGCTCCGGGAGTGGCCAGATCGCCAAACCACGCCGATATCTTGCCAGC
GTGACTGTTATGGTGCCGCC

Downstream 100 bases:

>100_bases
TCAGCGGTTCTTGGGCCGCTTGTGCAGCACGAGATGGGCCAGCGGGATCTGCGTCTGCTCCGGTGCGGCGGCCAGGCGCG
CGGCGATGCCGGCCTCGAGG

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 320; Mature: 320

Protein sequence:

>320_residues
MHTVAVLALPDVIAFDLATAVEVFGRARKTDGTTAYDVRVCATAAQVDAGPLRIGTDHGIDALADADTIVVPGCNDIGAE
APADVLETLRAAHAAGARVASICTGAFTVAAAGLLDGRRATTHWMAADAFRAAFPAVHLDPDVLYVDEGQVLTSAGASAG
LDLCLHMVARDHGAAVAADSARMAVAPLHRGGGQAQFILRNRAATGPLAEHTRLDGVLAWLEEHAHRDLTLADIAQYASM
SVRTLNRRFQAETGQTPMQWVTGVRVRHAQQLLETTGFGVERVGRQVGFSSPANFREQFRRLTGVAPLSYRNTFRERVAG

Sequences:

>Translated_320_residues
MHTVAVLALPDVIAFDLATAVEVFGRARKTDGTTAYDVRVCATAAQVDAGPLRIGTDHGIDALADADTIVVPGCNDIGAE
APADVLETLRAAHAAGARVASICTGAFTVAAAGLLDGRRATTHWMAADAFRAAFPAVHLDPDVLYVDEGQVLTSAGASAG
LDLCLHMVARDHGAAVAADSARMAVAPLHRGGGQAQFILRNRAATGPLAEHTRLDGVLAWLEEHAHRDLTLADIAQYASM
SVRTLNRRFQAETGQTPMQWVTGVRVRHAQQLLETTGFGVERVGRQVGFSSPANFREQFRRLTGVAPLSYRNTFRERVAG
>Mature_320_residues
MHTVAVLALPDVIAFDLATAVEVFGRARKTDGTTAYDVRVCATAAQVDAGPLRIGTDHGIDALADADTIVVPGCNDIGAE
APADVLETLRAAHAAGARVASICTGAFTVAAAGLLDGRRATTHWMAADAFRAAFPAVHLDPDVLYVDEGQVLTSAGASAG
LDLCLHMVARDHGAAVAADSARMAVAPLHRGGGQAQFILRNRAATGPLAEHTRLDGVLAWLEEHAHRDLTLADIAQYASM
SVRTLNRRFQAETGQTPMQWVTGVRVRHAQQLLETTGFGVERVGRQVGFSSPANFREQFRRLTGVAPLSYRNTFRERVAG

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: COG4977

COG function: function code K; Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790339, Length=100, Percent_Identity=33, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR002818 [H]

Pfam domain/function: PF01965 DJ-1_PfpI; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 33907; Mature: 33907

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHTVAVLALPDVIAFDLATAVEVFGRARKTDGTTAYDVRVCATAAQVDAGPLRIGTDHGI
CCEEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEHHHHHCCCCCEEECCCCCC
DALADADTIVVPGCNDIGAEAPADVLETLRAAHAAGARVASICTGAFTVAAAGLLDGRRA
HHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCH
TTHWMAADAFRAAFPAVHLDPDVLYVDEGQVLTSAGASAGLDLCLHMVARDHGAAVAADS
HHHHHHHHHHHHHCCEEECCCCEEEECCCCEEECCCCHHHHHHHHHHHHHCCCCEEECCC
ARMAVAPLHRGGGQAQFILRNRAATGPLAEHTRLDGVLAWLEEHAHRDLTLADIAQYASM
CCEEEEEHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
SVRTLNRRFQAETGQTPMQWVTGVRVRHAQQLLETTGFGVERVGRQVGFSSPANFREQFR
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHH
RLTGVAPLSYRNTFRERVAG
HHHCCCCHHHHHHHHHHHCC
>Mature Secondary Structure
MHTVAVLALPDVIAFDLATAVEVFGRARKTDGTTAYDVRVCATAAQVDAGPLRIGTDHGI
CCEEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEHHHHHCCCCCEEECCCCCC
DALADADTIVVPGCNDIGAEAPADVLETLRAAHAAGARVASICTGAFTVAAAGLLDGRRA
HHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCH
TTHWMAADAFRAAFPAVHLDPDVLYVDEGQVLTSAGASAGLDLCLHMVARDHGAAVAADS
HHHHHHHHHHHHHCCEEECCCCEEEECCCCEEECCCCHHHHHHHHHHHHHCCCCEEECCC
ARMAVAPLHRGGGQAQFILRNRAATGPLAEHTRLDGVLAWLEEHAHRDLTLADIAQYASM
CCEEEEEHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
SVRTLNRRFQAETGQTPMQWVTGVRVRHAQQLLETTGFGVERVGRQVGFSSPANFREQFR
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHH
RLTGVAPLSYRNTFRERVAG
HHHCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]