Click here to switch to the map view.

The map label for this gene is csgD [C]

Identifier: 108800345

GI number: 108800345

Start: 3581240

End: 3582868

Strand: Reverse

Name: csgD [C]

Synonym: Mmcs_3379

Alternate gene names: 108800345

Gene position: 3582868-3581240 (Counterclockwise)

Preceding gene: 108800349

Following gene: 108800344

Centisome position: 62.8

GC content: 70.78

Gene sequence:

>1629_bases
ATGAACGCCGGCGACATGAAAACCACGACCGACCTCCACACCGAACTGGTGACCGCGGCCCGCGCCGCCCATGCCGGCCG
CGACTGGCACGGCTCGTATGCGAACTTCGCCCGGGCCAACGCCGTCGCGGCGCTGAGCACCGACGACCTCGACGCGTTGT
CGGTCGCGGCCTGGCGCATCGGCGAGGCCAAGGAAGCGGTGCGCATCGCCGAGCGGGTTTTCGCCCAGTTGGCGCGCAGC
GATCCGAACGCCGCGGCGCGCAAGGCCGTCGAACTGGCGCTGGCGTGGCTGACCCGCGGGGACCTCAACATCGCCGCCGG
GTGGATGAACCGCGCCCGCCGACTGCTCGACGGTGTGCCGGAGAGCCCGACGCACGGTTACCTCACCTATCTGGACGCCG
TGGTCGCCGTGCTCGGCGACGACCTGGACACGCTGACCCGGTTGGTGGCGGATCTGCGGGCGATGAGCGGCCGGCTCGAC
GTGCCCGCACTGACCGCGCTCGCGATGGTGGCCGAGGCGATCGAGGCGGTCTATGCCGGGCGGATGTCGCACGCCGGTGG
ACTTCTCGACGAGGTGATGCTGCCGCTGATGGCCGACGACGTGCCGATCGACTGGGCCGGCGACATCTACTGCATCGTGC
TGCACATCTGCCACAAGGTGGCCGACCTGCCACGGATGCGGGCCTGGGTGCACTCCATGGAACGGTGGTGCGCGGCGGCG
GGATCCGACACCTACGGCGGGGTGTGCGACGTGCACCGGCTGCAGGTGCGGGCCGCCACCGACGACTACCAGAGCCTGGA
GAACCAGTTGGCCCGCGCCAGCCAGATGCTCGAGAGCGTCAACTCCTGGGCGGCCGGCGAGGGGTTCTACCAACTGGGGG
AGGTGCGGCGACTGCGCGGCGACGCGGACGGCGCGTTCGCCGCGTACGCCAGGGCCCGCGCATCGGGTGTCGATCCGCAG
CCGGGTGAGGCGATGCTGCGCTGCCGGCTGGGCCAGAGCCAGGCGGCATGGGCCGATCTAAGGGTGGCCCTGACGTCGGC
AGACCGCCTGGACCGGATGCGCCTCCTGCGCGCCGCCGTCGAGATCGCCTTGGCGCGTGGGCAATTCGAGGAGGCCGAGC
AATACTGCCGCGAACTGGAAGACGGTGCGGCGCAATTCGGCACCGCGGGCTTCCGGGCGTGGGCGGCCCATGCGCGCGGC
GCGGTCCACGTCCAGGCCGGACGGCACGCCGAGGCGCTCGACAGCCTGGGCGCCGCGTTACGCGAATACCGCACCCAGCA
GTCGCGTTACGAGACCGCCGAGGTCTACGAGTGGATGGCGTTGGCGCACCGCGCGTTGGGTGACCACGCAACCGCGGACG
CCGATTCCGCCACCGCGGAGAGCATCTACGCCCATCTCGGGGTGGAACCCGCCACGGTCTGCGGCCGACCTCCCGGTGGG
CTCACCAAGCGGGAGATCGACATTTTGCGCCGCATCGCCGCCGACGGTGCGAGCAACCGCCAGTTGGCGCAACAGATGTT
CATCAGCGAGAAGACCGTCGGCCGGCACCTGGCGAACATCTACCTCAAGCTGCAGGTGTCATCGCGCGCTGCGGCGGTGG
CGTGGGCGCACCAGCACAACATCGCGTAG

Upstream 100 bases:

>100_bases
CCCTACAACCTAATGCCTCGGCGGTGGGAACGAATCGTGTCGGTCTCGGCCAAACCCATGGTTGAACCGTCGGGTCCGCA
CTACCGTTGAACCGAGCGAG

Downstream 100 bases:

>100_bases
CCGGCATCGTGTAGGCCGAAGGTGCGGAAAATACATCGTTTTCCCGATCCGCCCACCCGCCCCGGCGCCTAGCGTTCCGG
GGTATGACCACACTCGATGA

Product: LuxR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator LuxR Family; Response Regulator Receiver Protein; Transcriptional Regulator; TPR Repeat-Containing Protein; Regulatory Protein LuxRResponse Regulator Receiver

Number of amino acids: Translated: 542; Mature: 542

Protein sequence:

>542_residues
MNAGDMKTTTDLHTELVTAARAAHAGRDWHGSYANFARANAVAALSTDDLDALSVAAWRIGEAKEAVRIAERVFAQLARS
DPNAAARKAVELALAWLTRGDLNIAAGWMNRARRLLDGVPESPTHGYLTYLDAVVAVLGDDLDTLTRLVADLRAMSGRLD
VPALTALAMVAEAIEAVYAGRMSHAGGLLDEVMLPLMADDVPIDWAGDIYCIVLHICHKVADLPRMRAWVHSMERWCAAA
GSDTYGGVCDVHRLQVRAATDDYQSLENQLARASQMLESVNSWAAGEGFYQLGEVRRLRGDADGAFAAYARARASGVDPQ
PGEAMLRCRLGQSQAAWADLRVALTSADRLDRMRLLRAAVEIALARGQFEEAEQYCRELEDGAAQFGTAGFRAWAAHARG
AVHVQAGRHAEALDSLGAALREYRTQQSRYETAEVYEWMALAHRALGDHATADADSATAESIYAHLGVEPATVCGRPPGG
LTKREIDILRRIAADGASNRQLAQQMFISEKTVGRHLANIYLKLQVSSRAAAVAWAHQHNIA

Sequences:

>Translated_542_residues
MNAGDMKTTTDLHTELVTAARAAHAGRDWHGSYANFARANAVAALSTDDLDALSVAAWRIGEAKEAVRIAERVFAQLARS
DPNAAARKAVELALAWLTRGDLNIAAGWMNRARRLLDGVPESPTHGYLTYLDAVVAVLGDDLDTLTRLVADLRAMSGRLD
VPALTALAMVAEAIEAVYAGRMSHAGGLLDEVMLPLMADDVPIDWAGDIYCIVLHICHKVADLPRMRAWVHSMERWCAAA
GSDTYGGVCDVHRLQVRAATDDYQSLENQLARASQMLESVNSWAAGEGFYQLGEVRRLRGDADGAFAAYARARASGVDPQ
PGEAMLRCRLGQSQAAWADLRVALTSADRLDRMRLLRAAVEIALARGQFEEAEQYCRELEDGAAQFGTAGFRAWAAHARG
AVHVQAGRHAEALDSLGAALREYRTQQSRYETAEVYEWMALAHRALGDHATADADSATAESIYAHLGVEPATVCGRPPGG
LTKREIDILRRIAADGASNRQLAQQMFISEKTVGRHLANIYLKLQVSSRAAAVAWAHQHNIA
>Mature_542_residues
MNAGDMKTTTDLHTELVTAARAAHAGRDWHGSYANFARANAVAALSTDDLDALSVAAWRIGEAKEAVRIAERVFAQLARS
DPNAAARKAVELALAWLTRGDLNIAAGWMNRARRLLDGVPESPTHGYLTYLDAVVAVLGDDLDTLTRLVADLRAMSGRLD
VPALTALAMVAEAIEAVYAGRMSHAGGLLDEVMLPLMADDVPIDWAGDIYCIVLHICHKVADLPRMRAWVHSMERWCAAA
GSDTYGGVCDVHRLQVRAATDDYQSLENQLARASQMLESVNSWAAGEGFYQLGEVRRLRGDADGAFAAYARARASGVDPQ
PGEAMLRCRLGQSQAAWADLRVALTSADRLDRMRLLRAAVEIALARGQFEEAEQYCRELEDGAAQFGTAGFRAWAAHARG
AVHVQAGRHAEALDSLGAALREYRTQQSRYETAEVYEWMALAHRALGDHATADADSATAESIYAHLGVEPATVCGRPPGG
LTKREIDILRRIAADGASNRQLAQQMFISEKTVGRHLANIYLKLQVSSRAAAVAWAHQHNIA

Specific function: Necessary For Transcription Of The Csgab Operon. May Have The Capability To Respond To Starvation And/Or High Cell Density By Activating Csgba Transcription. [C]

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 58723; Mature: 58723

Theoretical pI: Translated: 6.33; Mature: 6.33

Prosite motif: PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAGDMKTTTDLHTELVTAARAAHAGRDWHGSYANFARANAVAALSTDDLDALSVAAWRI
CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHEEEECCCCCHHHHHHHHHC
GEAKEAVRIAERVFAQLARSDPNAAARKAVELALAWLTRGDLNIAAGWMNRARRLLDGVP
CHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC
ESPTHGYLTYLDAVVAVLGDDLDTLTRLVADLRAMSGRLDVPALTALAMVAEAIEAVYAG
CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
RMSHAGGLLDEVMLPLMADDVPIDWAGDIYCIVLHICHKVADLPRMRAWVHSMERWCAAA
HHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GSDTYGGVCDVHRLQVRAATDDYQSLENQLARASQMLESVNSWAAGEGFYQLGEVRRLRG
CCCCCCCCCCHHHHEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHC
DADGAFAAYARARASGVDPQPGEAMLRCRLGQSQAAWADLRVALTSADRLDRMRLLRAAV
CCCCHHHHHHHHHHCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
EIALARGQFEEAEQYCRELEDGAAQFGTAGFRAWAAHARGAVHVQAGRHAEALDSLGAAL
HHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHH
REYRTQQSRYETAEVYEWMALAHRALGDHATADADSATAESIYAHLGVEPATVCGRPPGG
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHCCCCCCC
LTKREIDILRRIAADGASNRQLAQQMFISEKTVGRHLANIYLKLQVSSRAAAVAWAHQHN
CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCHHHHHHHHHCC
IA
CC
>Mature Secondary Structure
MNAGDMKTTTDLHTELVTAARAAHAGRDWHGSYANFARANAVAALSTDDLDALSVAAWRI
CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHEEEECCCCCHHHHHHHHHC
GEAKEAVRIAERVFAQLARSDPNAAARKAVELALAWLTRGDLNIAAGWMNRARRLLDGVP
CHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC
ESPTHGYLTYLDAVVAVLGDDLDTLTRLVADLRAMSGRLDVPALTALAMVAEAIEAVYAG
CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
RMSHAGGLLDEVMLPLMADDVPIDWAGDIYCIVLHICHKVADLPRMRAWVHSMERWCAAA
HHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GSDTYGGVCDVHRLQVRAATDDYQSLENQLARASQMLESVNSWAAGEGFYQLGEVRRLRG
CCCCCCCCCCHHHHEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHC
DADGAFAAYARARASGVDPQPGEAMLRCRLGQSQAAWADLRVALTSADRLDRMRLLRAAV
CCCCHHHHHHHHHHCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
EIALARGQFEEAEQYCRELEDGAAQFGTAGFRAWAAHARGAVHVQAGRHAEALDSLGAAL
HHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHH
REYRTQQSRYETAEVYEWMALAHRALGDHATADADSATAESIYAHLGVEPATVCGRPPGG
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHCCCCCCC
LTKREIDILRRIAADGASNRQLAQQMFISEKTVGRHLANIYLKLQVSSRAAAVAWAHQHN
CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCHHHHHHHHHCC
IA
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA