Click here to switch to the map view.

The map label for this gene is ctaF [H]

Identifier: 108800263

GI number: 108800263

Start: 3494672

End: 3495091

Strand: Reverse

Name: ctaF [H]

Synonym: Mmcs_3297

Alternate gene names: 108800263

Gene position: 3495091-3494672 (Counterclockwise)

Preceding gene: 108800264

Following gene: 108800262

Centisome position: 61.26

GC content: 68.33

Gene sequence:

>420_bases
ATGCACATCGAAGCCAGGTTGTTCGAGTTCCTCACGGCGTTCTTCGCCCTGTCGGCCGTCGTGTACGCCACGCTGACCGC
GATGTTCGGCAACGGCGGCGTGGAGTGGGCCGGTACCACCGCACTGGTGCTGACCACCGGCCTGACCCTGATCGTCGGCA
CCTTCTTCCGGTTCGTCGCCCGTCGCCTGGACACCCGGCCCGAGGACTACGAGGACGCCGAGATCAGCGACGGCGCCGGC
GAACTCGGGTTCTTCGCGCCCCACAGCTGGTGGCCGATCATGATCGCGCTGTCGTTCTCCACCGCCGCGGTGGGCGCCGC
GCTGTGGCTGCCGTGGCTGCTCGTCGCGGGCATCGTGTTCGTGCTCGTCTCGGCCGCCGGCCTGGTCTTCGAATACCACT
GGGGCCCCGAGAAGCACTGA

Upstream 100 bases:

>100_bases
ACTGATCGCCATCAACCAGCCACCCACCGCCGTCACCACCAAGCCGTTCGACACGCGGCGCGGTGAGATGGCCCCGCAAG
CGAGCAGGTAGGACTCCTCG

Downstream 100 bases:

>100_bases
TCGCGGCGCTCGCACGGGCGGAAAGATCACGAAACGGGCAACACTTGGCCGGCGAACCGCGCTGTGACGGTCGCCGGTCA
CCCGTCGTTGGGTAGTGTTT

Product: hypothetical protein

Products: NA

Alternate protein names: Cytochrome aa3 subunit 4; Cytochrome c oxidase polypeptide IV [H]

Number of amino acids: Translated: 139; Mature: 139

Protein sequence:

>139_residues
MHIEARLFEFLTAFFALSAVVYATLTAMFGNGGVEWAGTTALVLTTGLTLIVGTFFRFVARRLDTRPEDYEDAEISDGAG
ELGFFAPHSWWPIMIALSFSTAAVGAALWLPWLLVAGIVFVLVSAAGLVFEYHWGPEKH

Sequences:

>Translated_139_residues
MHIEARLFEFLTAFFALSAVVYATLTAMFGNGGVEWAGTTALVLTTGLTLIVGTFFRFVARRLDTRPEDYEDAEISDGAG
ELGFFAPHSWWPIMIALSFSTAAVGAALWLPWLLVAGIVFVLVSAAGLVFEYHWGPEKH
>Mature_139_residues
MHIEARLFEFLTAFFALSAVVYATLTAMFGNGGVEWAGTTALVLTTGLTLIVGTFFRFVARRLDTRPEDYEDAEISDGAG
ELGFFAPHSWWPIMIALSFSTAAVGAALWLPWLLVAGIVFVLVSAAGLVFEYHWGPEKH

Specific function: Part of cytochrome c oxidase, its function is unknown [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome c oxidase bacterial subunit CtaF family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR021050 [H]

Pfam domain/function: PF12270 Cyt_c_ox_IV [H]

EC number: =1.9.3.1 [H]

Molecular weight: Translated: 15202; Mature: 15202

Theoretical pI: Translated: 4.58; Mature: 4.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHIEARLFEFLTAFFALSAVVYATLTAMFGNGGVEWAGTTALVLTTGLTLIVGTFFRFVA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
RRLDTRPEDYEDAEISDGAGELGFFAPHSWWPIMIALSFSTAAVGAALWLPWLLVAGIVF
HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHEEHHHHHHHHHHHHHHHHHHHHHHH
VLVSAAGLVFEYHWGPEKH
HHHHHHHHHEEECCCCCCC
>Mature Secondary Structure
MHIEARLFEFLTAFFALSAVVYATLTAMFGNGGVEWAGTTALVLTTGLTLIVGTFFRFVA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
RRLDTRPEDYEDAEISDGAGELGFFAPHSWWPIMIALSFSTAAVGAALWLPWLLVAGIVF
HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHEEHHHHHHHHHHHHHHHHHHHHHHH
VLVSAAGLVFEYHWGPEKH
HHHHHHHHHEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]