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The map label for this gene is yggS [C]

Identifier: 108800217

GI number: 108800217

Start: 3445388

End: 3446152

Strand: Reverse

Name: yggS [C]

Synonym: Mmcs_3251

Alternate gene names: 108800217

Gene position: 3446152-3445388 (Counterclockwise)

Preceding gene: 108800218

Following gene: 108800216

Centisome position: 60.4

GC content: 71.24

Gene sequence:

>765_bases
GTGAGCACCGTGGTCACCACCCGGGAGTCCGAGTTGGCTGCCTCGCTGGCCGCGCTGCGCGAACGGCTCGCCCGCGCCGC
GGACGCGGCGGGCCGCGATGTCGCCGAGATCGCGCTGCTGCCGGTCACCAAGTTCTTCCCGGCCTCCGACATCCGGATCC
TCTACGGGCTGGGCTGCCGCGAGTTCGCCGAATCGCGTGAGCAGGAGGCGTCGAAGAAGGCGGCCGAACTGGCGGGCGAG
TTCGCCGGCGACCCGGTGCGGTGGCACATGGTGGGCCGGATCCAGCGCAACAAGGCCAGGGCGGTCGCGCGCTGGGCGTA
CGCCGCGCATTCGGTGGACAGCGCCAAGCTGATCGCCGCGCTCGACCGGGGCGCGGGCGACGCGCTCGGCGACGGGGTAC
GCACGGCGCCGTTGCGGGTCTACCTGCAGCTCAGCCTCGACGGTGACGTCGAACGCGGCGGGGTCGACGTCGACCAGCCG
GAGCTGATCGACCAGCTGTGCGCCGCAGTCGATTCCGCGGAGGCGCTCGAGTTCGTCGGGTTGATGGGCATCCCGCCGCT
GGGTGCCGACGCCGAGTCGGCGTTCGCGCGTCTGCAGTCGGAGTGGCGTCGGGTGCGGCAGCGCCGCAAAGAGATTGGCC
GCGGGCAGCGGTTCGAGTTGTCCGCCGGGATGTCCGGTGATCTCGAGATGGCGGTCCGACACGGCTCGACATGTGTGCGT
GTCGGAACCGCGCTTATGGGACCTCGTCCTCTAACGTCACCCTGA

Upstream 100 bases:

>100_bases
CCATCGACGTCGACCCGCGCTGCACCGTCGCCGACCGCAACCTGTTCAGCCATCGCCGCAACGCTCCCACCGGCAGGCTG
GCCTCGCTGGTGTGGATGGA

Downstream 100 bases:

>100_bases
GTAGTCACTCCAGTCACATCTTCATCACAGACACCACAGCTTGACGGTCTTCAGAAGGGTCGCGCGATGAGCACACTGCA
CAAGGTCAAGGCCTACTTCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 254; Mature: 253

Protein sequence:

>254_residues
MSTVVTTRESELAASLAALRERLARAADAAGRDVAEIALLPVTKFFPASDIRILYGLGCREFAESREQEASKKAAELAGE
FAGDPVRWHMVGRIQRNKARAVARWAYAAHSVDSAKLIAALDRGAGDALGDGVRTAPLRVYLQLSLDGDVERGGVDVDQP
ELIDQLCAAVDSAEALEFVGLMGIPPLGADAESAFARLQSEWRRVRQRRKEIGRGQRFELSAGMSGDLEMAVRHGSTCVR
VGTALMGPRPLTSP

Sequences:

>Translated_254_residues
MSTVVTTRESELAASLAALRERLARAADAAGRDVAEIALLPVTKFFPASDIRILYGLGCREFAESREQEASKKAAELAGE
FAGDPVRWHMVGRIQRNKARAVARWAYAAHSVDSAKLIAALDRGAGDALGDGVRTAPLRVYLQLSLDGDVERGGVDVDQP
ELIDQLCAAVDSAEALEFVGLMGIPPLGADAESAFARLQSEWRRVRQRRKEIGRGQRFELSAGMSGDLEMAVRHGSTCVR
VGTALMGPRPLTSP
>Mature_253_residues
STVVTTRESELAASLAALRERLARAADAAGRDVAEIALLPVTKFFPASDIRILYGLGCREFAESREQEASKKAAELAGEF
AGDPVRWHMVGRIQRNKARAVARWAYAAHSVDSAKLIAALDRGAGDALGDGVRTAPLRVYLQLSLDGDVERGGVDVDQPE
LIDQLCAAVDSAEALEFVGLMGIPPLGADAESAFARLQSEWRRVRQRRKEIGRGQRFELSAGMSGDLEMAVRHGSTCVRV
GTALMGPRPLTSP

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=249, Percent_Identity=29.3172690763052, Blast_Score=82, Evalue=5e-16,
Organism=Escherichia coli, GI1789321, Length=245, Percent_Identity=32.6530612244898, Blast_Score=101, Evalue=6e-23,
Organism=Caenorhabditis elegans, GI17533025, Length=227, Percent_Identity=28.6343612334802, Blast_Score=79, Evalue=2e-15,
Organism=Saccharomyces cerevisiae, GI6319435, Length=264, Percent_Identity=30.3030303030303, Blast_Score=106, Evalue=4e-24,
Organism=Drosophila melanogaster, GI45550861, Length=219, Percent_Identity=27.8538812785388, Blast_Score=73, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 27311; Mature: 27180

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: PS00267 TACHYKININ ; PS01211 UPF0001

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTVVTTRESELAASLAALRERLARAADAAGRDVAEIALLPVTKFFPASDIRILYGLGCR
CCCEECCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEECCCHH
EFAESREQEASKKAAELAGEFAGDPVRWHMVGRIQRNKARAVARWAYAAHSVDSAKLIAA
HHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
LDRGAGDALGDGVRTAPLRVYLQLSLDGDVERGGVDVDQPELIDQLCAAVDSAEALEFVG
HHCCCCCHHCCCCCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCHHHHHHHHH
LMGIPPLGADAESAFARLQSEWRRVRQRRKEIGRGQRFELSAGMSGDLEMAVRHGSTCVR
HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHCCCHHHH
VGTALMGPRPLTSP
HHHHHCCCCCCCCC
>Mature Secondary Structure 
STVVTTRESELAASLAALRERLARAADAAGRDVAEIALLPVTKFFPASDIRILYGLGCR
CCEECCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEECCCHH
EFAESREQEASKKAAELAGEFAGDPVRWHMVGRIQRNKARAVARWAYAAHSVDSAKLIAA
HHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
LDRGAGDALGDGVRTAPLRVYLQLSLDGDVERGGVDVDQPELIDQLCAAVDSAEALEFVG
HHCCCCCHHCCCCCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCHHHHHHHHH
LMGIPPLGADAESAFARLQSEWRRVRQRRKEIGRGQRFELSAGMSGDLEMAVRHGSTCVR
HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHCCCHHHH
VGTALMGPRPLTSP
HHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]