| Definition | Myxococcus xanthus DK 1622 chromosome, complete genome. |
|---|---|
| Accession | NC_008095 |
| Length | 9,139,763 |
Click here to switch to the map view.
The map label for this gene is phbB [H]
Identifier: 108763856
GI number: 108763856
Start: 1045157
End: 1045894
Strand: Reverse
Name: phbB [H]
Synonym: MXAN_0915
Alternate gene names: 108763856
Gene position: 1045894-1045157 (Counterclockwise)
Preceding gene: 108761061
Following gene: 108759227
Centisome position: 11.44
GC content: 70.46
Gene sequence:
>738_bases ATGGATTTCGGACTGAAGGGTAGACGCGCGCTGGTGATGGGCGCGTCCGCGGGGCTGGGTTACGCCATCGCGGAGGCGTT GGTGAAGGAAGGCGCCACGGTGGCCATCTGCTCGCGCGGTGGCGAGAAGCTGGAGCGCGCGGCGAAGGCGCTGGGCGCGG CGCTCGCGGTGCCGTGCGATTTGACGCAGCCCCAAGCCGCGAAGGCGCTGGTGGAGACTGTCACCGCGAAGCTGGGCGGC GTTGATGTCCTCGTGGTGAACACGGGCGGGCCACCGTCAGGTGGCTTCGAATCCCTGACGGCAGAGCAGTGGCAGCTCGG CTTCCAGAGCCTGTGGATGGCCGCGGTGGATGGCATCCAGGCGGTGCTCCCGGGGATGAAGGAGCGCCAGTGGGGCCGCA TCGTCCTGGTGACGTCGCTGGCGGCGCGCGAGGCGATGAACAACCTGACCATCTCCAACGGCCTGCGCGCGGGCCTGCTC GGGTTGGTGAAGACGGTGAGCAACGAGGTGGCGCAGCACGGCGTCACGCTGAACGCGGTGCTGCCGGGCTACCACGCCAC CGAGCGCATGCAGCAGCTCGGGCTGACGGACGAGAAGGTGGCGCCGCAGATTCCCGCGCGGCGGCTGGGCCGCCCGGAGG AGCTGGCCGCGCTCACGGCGTTCCTCGCCTCCGAGCAGGCGTCCTACATCACCGGGCAGTCCATCGCGGTGGACGGCGGC GCGCAGCGAGGCTTCTGA
Upstream 100 bases:
>100_bases GAGCTGAGCGAGGGCCTGCCTCGGGCGGAAGACGTGGACCTGAAGCGCGCGGCGGAGCTCATCCGGAGCCGGCTGACACC ATTCATGAAGGAGCACGCTG
Downstream 100 bases:
>100_bases GCGCGTCCAACGACGCGGGCCTGGCCGGGCGCCTCGTCTGGCCCGGCTCAGTCCGCGGCGGCCCGAGTGAACAACCGGCC GCCCTGCTTGCGCCGGCGAT
Product: short chain dehydrogenase/reductase family oxidoreductase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 245; Mature: 245
Protein sequence:
>245_residues MDFGLKGRRALVMGASAGLGYAIAEALVKEGATVAICSRGGEKLERAAKALGAALAVPCDLTQPQAAKALVETVTAKLGG VDVLVVNTGGPPSGGFESLTAEQWQLGFQSLWMAAVDGIQAVLPGMKERQWGRIVLVTSLAAREAMNNLTISNGLRAGLL GLVKTVSNEVAQHGVTLNAVLPGYHATERMQQLGLTDEKVAPQIPARRLGRPEELAALTAFLASEQASYITGQSIAVDGG AQRGF
Sequences:
>Translated_245_residues MDFGLKGRRALVMGASAGLGYAIAEALVKEGATVAICSRGGEKLERAAKALGAALAVPCDLTQPQAAKALVETVTAKLGG VDVLVVNTGGPPSGGFESLTAEQWQLGFQSLWMAAVDGIQAVLPGMKERQWGRIVLVTSLAAREAMNNLTISNGLRAGLL GLVKTVSNEVAQHGVTLNAVLPGYHATERMQQLGLTDEKVAPQIPARRLGRPEELAALTAFLASEQASYITGQSIAVDGG AQRGF >Mature_245_residues MDFGLKGRRALVMGASAGLGYAIAEALVKEGATVAICSRGGEKLERAAKALGAALAVPCDLTQPQAAKALVETVTAKLGG VDVLVVNTGGPPSGGFESLTAEQWQLGFQSLWMAAVDGIQAVLPGMKERQWGRIVLVTSLAAREAMNNLTISNGLRAGLL GLVKTVSNEVAQHGVTLNAVLPGYHATERMQQLGLTDEKVAPQIPARRLGRPEELAALTAFLASEQASYITGQSIAVDGG AQRGF
Specific function: Fatty acid biosynthesis pathway; first reduction step. [C]
COG id: COG1028
COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI32483357, Length=244, Percent_Identity=34.0163934426229, Blast_Score=123, Evalue=2e-28, Organism=Homo sapiens, GI5031737, Length=253, Percent_Identity=32.8063241106719, Blast_Score=108, Evalue=4e-24, Organism=Homo sapiens, GI19923817, Length=251, Percent_Identity=31.4741035856574, Blast_Score=103, Evalue=1e-22, Organism=Homo sapiens, GI15277342, Length=253, Percent_Identity=30.0395256916996, Blast_Score=100, Evalue=2e-21, Organism=Homo sapiens, GI126723750, Length=247, Percent_Identity=29.9595141700405, Blast_Score=97, Evalue=2e-20, Organism=Homo sapiens, GI40254992, Length=232, Percent_Identity=28.448275862069, Blast_Score=91, Evalue=1e-18, Organism=Homo sapiens, GI33667109, Length=189, Percent_Identity=33.8624338624339, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI66933014, Length=227, Percent_Identity=27.7533039647577, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI4503817, Length=189, Percent_Identity=28.5714285714286, Blast_Score=76, Evalue=4e-14, Organism=Homo sapiens, GI59889578, Length=231, Percent_Identity=27.2727272727273, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI7705925, Length=245, Percent_Identity=28.9795918367347, Blast_Score=71, Evalue=8e-13, Organism=Homo sapiens, GI126723191, Length=181, Percent_Identity=29.8342541436464, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI10190704, Length=257, Percent_Identity=25.6809338521401, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI4503301, Length=252, Percent_Identity=25.3968253968254, Blast_Score=68, Evalue=7e-12, Organism=Escherichia coli, GI1787335, Length=253, Percent_Identity=33.596837944664, Blast_Score=122, Evalue=2e-29, Organism=Escherichia coli, GI87082100, Length=255, Percent_Identity=30.5882352941176, Blast_Score=108, Evalue=2e-25, Organism=Escherichia coli, GI1790717, Length=246, Percent_Identity=28.8617886178862, Blast_Score=106, Evalue=2e-24, Organism=Escherichia coli, GI1787905, Length=246, Percent_Identity=30.4878048780488, Blast_Score=105, Evalue=2e-24, Organism=Escherichia coli, GI1789208, Length=247, Percent_Identity=27.5303643724696, Blast_Score=97, Evalue=7e-22, Organism=Escherichia coli, GI1789378, Length=250, Percent_Identity=30, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI1788459, Length=244, Percent_Identity=31.9672131147541, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI87082160, Length=247, Percent_Identity=28.7449392712551, Blast_Score=91, Evalue=7e-20, Organism=Escherichia coli, GI1786812, Length=257, Percent_Identity=31.1284046692607, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI2367365, Length=240, Percent_Identity=26.6666666666667, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI2367175, Length=243, Percent_Identity=28.8065843621399, Blast_Score=61, Evalue=6e-11, Organism=Escherichia coli, GI1787545, Length=259, Percent_Identity=26.2548262548263, Blast_Score=60, Evalue=1e-10, Organism=Caenorhabditis elegans, GI17560676, Length=247, Percent_Identity=29.9595141700405, Blast_Score=113, Evalue=9e-26, Organism=Caenorhabditis elegans, GI17562910, Length=263, Percent_Identity=29.6577946768061, Blast_Score=97, Evalue=6e-21, Organism=Caenorhabditis elegans, GI17560150, Length=258, Percent_Identity=30.2325581395349, Blast_Score=97, Evalue=9e-21, Organism=Caenorhabditis elegans, GI17561402, Length=253, Percent_Identity=28.8537549407115, Blast_Score=95, Evalue=4e-20, Organism=Caenorhabditis elegans, GI17565030, Length=259, Percent_Identity=32.046332046332, Blast_Score=94, Evalue=7e-20, Organism=Caenorhabditis elegans, GI17563726, Length=257, Percent_Identity=30.3501945525292, Blast_Score=93, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17562990, Length=258, Percent_Identity=30.2325581395349, Blast_Score=91, Evalue=7e-19, Organism=Caenorhabditis elegans, GI17560332, Length=266, Percent_Identity=30.8270676691729, Blast_Score=88, Evalue=4e-18, Organism=Caenorhabditis elegans, GI72000259, Length=258, Percent_Identity=30.6201550387597, Blast_Score=87, Evalue=9e-18, Organism=Caenorhabditis elegans, GI17562906, Length=259, Percent_Identity=27.4131274131274, Blast_Score=85, Evalue=4e-17, Organism=Caenorhabditis elegans, GI17536025, Length=259, Percent_Identity=29.3436293436293, Blast_Score=84, Evalue=6e-17, Organism=Caenorhabditis elegans, GI17536651, Length=258, Percent_Identity=28.2945736434109, Blast_Score=84, Evalue=8e-17, Organism=Caenorhabditis elegans, GI25147288, Length=244, Percent_Identity=29.5081967213115, Blast_Score=84, Evalue=8e-17, Organism=Caenorhabditis elegans, GI193204405, Length=259, Percent_Identity=28.1853281853282, Blast_Score=83, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17538480, Length=263, Percent_Identity=29.277566539924, Blast_Score=83, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17559104, Length=257, Percent_Identity=26.4591439688716, Blast_Score=82, Evalue=3e-16, Organism=Caenorhabditis elegans, GI17538486, Length=261, Percent_Identity=30.2681992337165, Blast_Score=81, Evalue=6e-16, Organism=Caenorhabditis elegans, GI17562908, Length=259, Percent_Identity=27.027027027027, Blast_Score=78, Evalue=4e-15, Organism=Caenorhabditis elegans, GI17508651, Length=251, Percent_Identity=29.4820717131474, Blast_Score=78, Evalue=4e-15, Organism=Caenorhabditis elegans, GI17551412, Length=261, Percent_Identity=31.0344827586207, Blast_Score=78, Evalue=4e-15, Organism=Caenorhabditis elegans, GI17560220, Length=259, Percent_Identity=25.8687258687259, Blast_Score=78, Evalue=5e-15, Organism=Caenorhabditis elegans, GI17561272, Length=255, Percent_Identity=28.6274509803922, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17562904, Length=261, Percent_Identity=26.0536398467433, Blast_Score=76, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17555706, Length=248, Percent_Identity=27.4193548387097, Blast_Score=75, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17531453, Length=266, Percent_Identity=26.6917293233083, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17544670, Length=267, Percent_Identity=26.5917602996255, Blast_Score=74, Evalue=5e-14, Organism=Caenorhabditis elegans, GI71994604, Length=250, Percent_Identity=28.4, Blast_Score=68, Evalue=4e-12, Organism=Caenorhabditis elegans, GI71994600, Length=250, Percent_Identity=26.8, Blast_Score=66, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6324126, Length=247, Percent_Identity=26.7206477732794, Blast_Score=75, Evalue=9e-15, Organism=Saccharomyces cerevisiae, GI6322861, Length=237, Percent_Identity=25.3164556962025, Blast_Score=62, Evalue=7e-11, Organism=Drosophila melanogaster, GI21355319, Length=244, Percent_Identity=30.7377049180328, Blast_Score=111, Evalue=4e-25, Organism=Drosophila melanogaster, GI23397609, Length=249, Percent_Identity=34.136546184739, Blast_Score=106, Evalue=1e-23, Organism=Drosophila melanogaster, GI24639444, Length=248, Percent_Identity=29.8387096774194, Blast_Score=97, Evalue=1e-20, Organism=Drosophila melanogaster, GI28571526, Length=254, Percent_Identity=32.6771653543307, Blast_Score=96, Evalue=2e-20, Organism=Drosophila melanogaster, GI21357041, Length=248, Percent_Identity=31.4516129032258, Blast_Score=90, Evalue=1e-18, Organism=Drosophila melanogaster, GI24644339, Length=252, Percent_Identity=29.7619047619048, Blast_Score=82, Evalue=3e-16, Organism=Drosophila melanogaster, GI24643142, Length=242, Percent_Identity=30.1652892561983, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI24644337, Length=263, Percent_Identity=29.6577946768061, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI18859837, Length=241, Percent_Identity=29.4605809128631, Blast_Score=72, Evalue=5e-13, Organism=Drosophila melanogaster, GI21358495, Length=193, Percent_Identity=26.9430051813472, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI17737361, Length=254, Percent_Identity=29.1338582677165, Blast_Score=65, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011283 - InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: =1.1.1.36 [H]
Molecular weight: Translated: 25402; Mature: 25402
Theoretical pI: Translated: 8.22; Mature: 8.22
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDFGLKGRRALVMGASAGLGYAIAEALVKEGATVAICSRGGEKLERAAKALGAALAVPCD CCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHCCCCC LTQPQAAKALVETVTAKLGGVDVLVVNTGGPPSGGFESLTAEQWQLGFQSLWMAAVDGIQ CCCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH AVLPGMKERQWGRIVLVTSLAAREAMNNLTISNGLRAGLLGLVKTVSNEVAQHGVTLNAV HHHCCCCCCCCCCEEEEEHHHHHHHHHCCCHHCCHHHHHHHHHHHHHHHHHHCCCEEEEE LPGYHATERMQQLGLTDEKVAPQIPARRLGRPEELAALTAFLASEQASYITGQSIAVDGG CCCCHHHHHHHHCCCCCHHCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCC AQRGF CCCCC >Mature Secondary Structure MDFGLKGRRALVMGASAGLGYAIAEALVKEGATVAICSRGGEKLERAAKALGAALAVPCD CCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHCCCCC LTQPQAAKALVETVTAKLGGVDVLVVNTGGPPSGGFESLTAEQWQLGFQSLWMAAVDGIQ CCCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH AVLPGMKERQWGRIVLVTSLAAREAMNNLTISNGLRAGLLGLVKTVSNEVAQHGVTLNAV HHHCCCCCCCCCCEEEEEHHHHHHHHHCCCHHCCHHHHHHHHHHHHHHHHHHCCCEEEEE LPGYHATERMQQLGLTDEKVAPQIPARRLGRPEELAALTAFLASEQASYITGQSIAVDGG CCCCHHHHHHHHCCCCCHHCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCC AQRGF CCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2546004; 3286259 [H]