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The map label for this gene is pafB [H]

Identifier: 108763289

GI number: 108763289

Start: 1594645

End: 1595667

Strand: Direct

Name: pafB [H]

Synonym: MXAN_1359

Alternate gene names: 108763289

Gene position: 1594645-1595667 (Clockwise)

Preceding gene: 108758489

Following gene: 108761643

Centisome position: 17.45

GC content: 70.58

Gene sequence:

>1023_bases
ATGGACCGCACTGAACGCATCCTCGACCTCGTGGCCCTTCTGCTCGACGCACGCGAGCCCATCTCCTGGGCCGAGCTGCG
CGAGCACTTCCCTGGTGACTACGGCGGCTCCGATGATGCCGCCGAGCGCAAGTTCGAGCGCGACAAGGCGGAGCTGGTGG
AGCTGGGCTTTCCGCTGACGTACGTGCAAGGAGATGACGAGCGCCGGGACGGCTACATCGTCGACCGGGACGCCTACTAC
CTCCCGGAGGCGGACCTCTCCAAGGAGGAGCTGGCCGTGCTCTACGCCGCCGGCTCCGCGGCGCTGGCGTCGGGGGCCTT
CCCGGGCCGGGATGACCTGGCGCACGCGCTGCGGAAGATCGGCTTCTTCGCCGGTCAATCCCTGCCTACACCCCGGGTGC
GCATGGAGCTGGGCTCCGTGCATGAGGGCCAGGAGAAGGAGATCTCCGCGCGCCTGGAGCAGCTCTGGGATGCGTGCGCG
GCCCGCAAGTGGGTGGACCTGACGTATGCCAGCCCCAAGCAGGCGGGCACCACGCAGCGGCGGGTGGACCCGTATGGCCT
GGCGCTGCGCCGCGGCGCCTGGACGCTGGTGGGGTACTGCCACCTGCGCAAGGAATTGCGGACCTTCCACGTCCACCGGA
TTCGCGAACTCAAGGTGAACACGGCGCGCCCGCGCACACCGGACTTCCAGGTGCCGGCGGACTTCTCGCTGGAGGCCCAC
GTGGCGTACTTCCCGTGGCAGCACCGCTTCCATGAGCAGGAGGAGGTGGTGCTCCACCTGTCGGGCACGCTCGCCTCGCG
GGCCGCGAGCCTGTTGCCCGGCGCCACGCTGGAGCCGGCGGAGGAGGGGGCGGTGCGGGCGCGGCTGCCGGTCACGTTCG
TGGACGGCCTGATGCGCTTCTGCCTGGCGCTGGGGCCGGACTGCCGCGTGGAGGGCCCGGAGCGGGCGCAGGCGCGTCTG
CGGGAGATGGCCTCGCGCATCGTGTCGTGCCACGACGATTCGCTGGACAAGGTGAGCACATGA

Upstream 100 bases:

>100_bases
CTATCTCGCCGGACGCGAGCGGCCCTCTCACCTGTTTCCCACCCACACGTCCACTTCTTGACCCTCTCGGGTCCGCCCGG
CATCGTCGCCGACCTTTCCA

Downstream 100 bases:

>100_bases
GCAACGTCCACGAGCGGCTCCGCCGCCTGCTGTTCCTGGTTCCCTACGTCTCCAAGCACCCCGGCGTCACGGTGGACGCG
CTCGCGCGCGCCCTCAACAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 340; Mature: 340

Protein sequence:

>340_residues
MDRTERILDLVALLLDAREPISWAELREHFPGDYGGSDDAAERKFERDKAELVELGFPLTYVQGDDERRDGYIVDRDAYY
LPEADLSKEELAVLYAAGSAALASGAFPGRDDLAHALRKIGFFAGQSLPTPRVRMELGSVHEGQEKEISARLEQLWDACA
ARKWVDLTYASPKQAGTTQRRVDPYGLALRRGAWTLVGYCHLRKELRTFHVHRIRELKVNTARPRTPDFQVPADFSLEAH
VAYFPWQHRFHEQEEVVLHLSGTLASRAASLLPGATLEPAEEGAVRARLPVTFVDGLMRFCLALGPDCRVEGPERAQARL
REMASRIVSCHDDSLDKVST

Sequences:

>Translated_340_residues
MDRTERILDLVALLLDAREPISWAELREHFPGDYGGSDDAAERKFERDKAELVELGFPLTYVQGDDERRDGYIVDRDAYY
LPEADLSKEELAVLYAAGSAALASGAFPGRDDLAHALRKIGFFAGQSLPTPRVRMELGSVHEGQEKEISARLEQLWDACA
ARKWVDLTYASPKQAGTTQRRVDPYGLALRRGAWTLVGYCHLRKELRTFHVHRIRELKVNTARPRTPDFQVPADFSLEAH
VAYFPWQHRFHEQEEVVLHLSGTLASRAASLLPGATLEPAEEGAVRARLPVTFVDGLMRFCLALGPDCRVEGPERAQARL
REMASRIVSCHDDSLDKVST
>Mature_340_residues
MDRTERILDLVALLLDAREPISWAELREHFPGDYGGSDDAAERKFERDKAELVELGFPLTYVQGDDERRDGYIVDRDAYY
LPEADLSKEELAVLYAAGSAALASGAFPGRDDLAHALRKIGFFAGQSLPTPRVRMELGSVHEGQEKEISARLEQLWDACA
ARKWVDLTYASPKQAGTTQRRVDPYGLALRRGAWTLVGYCHLRKELRTFHVHRIRELKVNTARPRTPDFQVPADFSLEAH
VAYFPWQHRFHEQEEVVLHLSGTLASRAASLLPGATLEPAEEGAVRARLPVTFVDGLMRFCLALGPDCRVEGPERAQARL
REMASRIVSCHDDSLDKVST

Specific function: Does not seem to be involved in pupylation or substrate degradation [H]

COG id: COG2378

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the pafB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 38179; Mature: 38179

Theoretical pI: Translated: 5.98; Mature: 5.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRTERILDLVALLLDAREPISWAELREHFPGDYGGSDDAAERKFERDKAELVELGFPLT
CCHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEE
YVQGDDERRDGYIVDRDAYYLPEADLSKEELAVLYAAGSAALASGAFPGRDDLAHALRKI
EECCCCCCCCCEEEECCCEECCCCCCCHHHEEEEEECCCHHHHCCCCCCHHHHHHHHHHH
GFFAGQSLPTPRVRMELGSVHEGQEKEISARLEQLWDACAARKWVDLTYASPKQAGTTQR
HHHHCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCHH
RVDPYGLALRRGAWTLVGYCHLRKELRTFHVHRIRELKVNTARPRTPDFQVPADFSLEAH
CCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEE
VAYFPWQHRFHEQEEVVLHLSGTLASRAASLLPGATLEPAEEGAVRARLPVTFVDGLMRF
EEECCHHHHCCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCEEEECCHHHHHHHHHH
CLALGPDCRVEGPERAQARLREMASRIVSCHDDSLDKVST
HHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHCCC
>Mature Secondary Structure
MDRTERILDLVALLLDAREPISWAELREHFPGDYGGSDDAAERKFERDKAELVELGFPLT
CCHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEE
YVQGDDERRDGYIVDRDAYYLPEADLSKEELAVLYAAGSAALASGAFPGRDDLAHALRKI
EECCCCCCCCCEEEECCCEECCCCCCCHHHEEEEEECCCHHHHCCCCCCHHHHHHHHHHH
GFFAGQSLPTPRVRMELGSVHEGQEKEISARLEQLWDACAARKWVDLTYASPKQAGTTQR
HHHHCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCHH
RVDPYGLALRRGAWTLVGYCHLRKELRTFHVHRIRELKVNTARPRTPDFQVPADFSLEAH
CCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEE
VAYFPWQHRFHEQEEVVLHLSGTLASRAASLLPGATLEPAEEGAVRARLPVTFVDGLMRF
EEECCHHHHCCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCEEEECCHHHHHHHHHH
CLALGPDCRVEGPERAQARLREMASRIVSCHDDSLDKVST
HHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11234002 [H]