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The map label for this gene is pafC [H]

Identifier: 108761643

GI number: 108761643

Start: 1595664

End: 1596593

Strand: Direct

Name: pafC [H]

Synonym: MXAN_1360

Alternate gene names: 108761643

Gene position: 1595664-1596593 (Clockwise)

Preceding gene: 108763289

Following gene: 108762869

Centisome position: 17.46

GC content: 72.15

Gene sequence:

>930_bases
ATGAGCAACGTCCACGAGCGGCTCCGCCGCCTGCTGTTCCTGGTTCCCTACGTCTCCAAGCACCCCGGCGTCACGGTGGA
CGCGCTCGCGCGCGCCCTCAACATCAGCCGCGAGGACCTGCTGGAGGAGCTGGACCTGCTCACCTGCGTGGGCCGGCCGC
CCTTCAACCCGGACGACTACATCGACATCTACGTGGACAACGACCGCGTCTACGTGGACCTGGACCAGCGCCTCTTCGCG
CCGCCCCGGTTGACGCCGGGCGAGGCCGCGGCGCTGGCCGCGTCGGCGGAGCTGCTGCGGCCGGCCACGGGGGACGCATT
GCAGAGCGCCCTCCAGAAGCTGGAGCGCGTGCTGCCGCCCGCCACCCGCGAGCGTTACCGGGAGATGTACCGGAAGATTG
ATGCGTCCACGGAGGCGCCCCAGGCCCTGGGGCCGCTCACCCGGGCCATCATCGAGCGCCTGGAGGTGACGTTCGGCTAT
GCCAGCCCCGGCCGGTCGCCGGAGCCGCGCACCGTGCGCCCCTACGAGCTGCTCAGCCACCGGGGGCAGTGGTATCTGCA
GGGCTACTGCCACACCCGGCAGGACGCGCGCCTGTTCCGCCTGGACCGGATGGAGGACATCCTCGTCACGGACGTGTCCT
TCCAGCCGCCCGCGGACGCCCGGGCGGACGTGCCCAACCCGGCGCGGGGCCTGACGGACTCCTCGGTGCGCGTGCGCTTC
TCCCCCGTGGCCGCACCCTATGTGAAGGAGCGCTTCGGCCAGGACGCCCGCCCGCTTGCCGACGGGGGCGTGGAGGTGCT
GGTGGCGGGGGACAGCGAACGCTGGCTCACCCAGTGGGTCCTGTCTTTCGGTGGCGAGGCGCAGGTCATGGAACCGGCCT
CCGCGCGCGCGGCCGTTGCCCGAGCGGCGCGGGCCTCTGTAGGATTGTAA

Upstream 100 bases:

>100_bases
ACTGCCGCGTGGAGGGCCCGGAGCGGGCGCAGGCGCGTCTGCGGGAGATGGCCTCGCGCATCGTGTCGTGCCACGACGAT
TCGCTGGACAAGGTGAGCAC

Downstream 100 bases:

>100_bases
CCCCCCATGCCTTTCCAGCTGACGATCTCCGAGGGTAGAGAAGCCGGTAAGGAGTTCGTCTTCGACCAGGACTCCGTTCT
CATCGGCCGTTCGACGGATT

Product: hypothetical protein

Products: NA

Alternate protein names: Proteasome accessory factor C [H]

Number of amino acids: Translated: 309; Mature: 308

Protein sequence:

>309_residues
MSNVHERLRRLLFLVPYVSKHPGVTVDALARALNISREDLLEELDLLTCVGRPPFNPDDYIDIYVDNDRVYVDLDQRLFA
PPRLTPGEAAALAASAELLRPATGDALQSALQKLERVLPPATRERYREMYRKIDASTEAPQALGPLTRAIIERLEVTFGY
ASPGRSPEPRTVRPYELLSHRGQWYLQGYCHTRQDARLFRLDRMEDILVTDVSFQPPADARADVPNPARGLTDSSVRVRF
SPVAAPYVKERFGQDARPLADGGVEVLVAGDSERWLTQWVLSFGGEAQVMEPASARAAVARAARASVGL

Sequences:

>Translated_309_residues
MSNVHERLRRLLFLVPYVSKHPGVTVDALARALNISREDLLEELDLLTCVGRPPFNPDDYIDIYVDNDRVYVDLDQRLFA
PPRLTPGEAAALAASAELLRPATGDALQSALQKLERVLPPATRERYREMYRKIDASTEAPQALGPLTRAIIERLEVTFGY
ASPGRSPEPRTVRPYELLSHRGQWYLQGYCHTRQDARLFRLDRMEDILVTDVSFQPPADARADVPNPARGLTDSSVRVRF
SPVAAPYVKERFGQDARPLADGGVEVLVAGDSERWLTQWVLSFGGEAQVMEPASARAAVARAARASVGL
>Mature_308_residues
SNVHERLRRLLFLVPYVSKHPGVTVDALARALNISREDLLEELDLLTCVGRPPFNPDDYIDIYVDNDRVYVDLDQRLFAP
PRLTPGEAAALAASAELLRPATGDALQSALQKLERVLPPATRERYREMYRKIDASTEAPQALGPLTRAIIERLEVTFGYA
SPGRSPEPRTVRPYELLSHRGQWYLQGYCHTRQDARLFRLDRMEDILVTDVSFQPPADARADVPNPARGLTDSSVRVRFS
PVAAPYVKERFGQDARPLADGGVEVLVAGDSERWLTQWVLSFGGEAQVMEPASARAAVARAARASVGL

Specific function: Part of the pafABC operon, but pafC does not seem to be involved in pupylation or substrate degradation. Appears to play at least a small role in resistance to reactive nitrogen intermediates (RNI) in vitro [H]

COG id: COG2378

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the pafC family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34386; Mature: 34255

Theoretical pI: Translated: 6.17; Mature: 6.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNVHERLRRLLFLVPYVSKHPGVTVDALARALNISREDLLEELDLLTCVGRPPFNPDDY
CCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCE
IDIYVDNDRVYVDLDQRLFAPPRLTPGEAAALAASAELLRPATGDALQSALQKLERVLPP
EEEEECCCEEEEEECHHCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
ATRERYREMYRKIDASTEAPQALGPLTRAIIERLEVTFGYASPGRSPEPRTVRPYELLSH
HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHC
RGQWYLQGYCHTRQDARLFRLDRMEDILVTDVSFQPPADARADVPNPARGLTDSSVRVRF
CCCEEEEEECCCCCCHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
SPVAAPYVKERFGQDARPLADGGVEVLVAGDSERWLTQWVLSFGGEAQVMEPASARAAVA
CCCCCHHHHHHCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHCCCCCEEECCHHHHHHHH
RAARASVGL
HHHHHHCCC
>Mature Secondary Structure 
SNVHERLRRLLFLVPYVSKHPGVTVDALARALNISREDLLEELDLLTCVGRPPFNPDDY
CHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCE
IDIYVDNDRVYVDLDQRLFAPPRLTPGEAAALAASAELLRPATGDALQSALQKLERVLPP
EEEEECCCEEEEEECHHCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
ATRERYREMYRKIDASTEAPQALGPLTRAIIERLEVTFGYASPGRSPEPRTVRPYELLSH
HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHC
RGQWYLQGYCHTRQDARLFRLDRMEDILVTDVSFQPPADARADVPNPARGLTDSSVRVRF
CCCEEEEEECCCCCCHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
SPVAAPYVKERFGQDARPLADGGVEVLVAGDSERWLTQWVLSFGGEAQVMEPASARAAVA
CCCCCHHHHHHCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHCCCCCEEECCHHHHHHHH
RAARASVGL
HHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]