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The map label for this gene is yeaM [H]

Identifier: 108760454

GI number: 108760454

Start: 2557325

End: 2558110

Strand: Reverse

Name: yeaM [H]

Synonym: MXAN_2216

Alternate gene names: 108760454

Gene position: 2558110-2557325 (Counterclockwise)

Preceding gene: 108762771

Following gene: 108762284

Centisome position: 27.99

GC content: 69.21

Gene sequence:

>786_bases
ATGGCGAAGCAGCTCCAGGTTCCTTTCACCACAAACCTTCCACACCCCGTGTATTTCCGGACGGCGAGCCTGCCTGCCGC
GGCGACGTACCCCCGGCATCGGCACCCCTGGGGGGAGTTCGTCTACGCGTTCAGCGGGGTGATGGAACTCAAGCTGGCCG
GCAGCCACTACCTGGCGCCCCCGCAGTACGGCATCTGGCTTCCACCCGACGTGGAGCACCGGGGCATGAACCGCTTCGAG
GCGAGCCACTGCTCGCTCTACCTCGCGCAGGCGTGGTGCCGGGGCATGCCCAAGACGACGTGCGCGCTGGCGGTGAGCCC
TCTGGTGAAGTCATTGCTGGAGCACCTCCGCGCGCATGAGCTGGCGCAGCCTCGCACGAGCGCCGAGCGCCGACTGTTCC
GGGTGCTCATCGACCAGCTGACGCTGGCCCCCACCCATGGGAGCTACCTGCCCATGTCCGATGACTCGCTCCTGGAGCCG
GTCCTCACGGCGCTCGAGCAGCACCCGGAGGATGAGCGCTCCCTGGCCGAGTGGGCGCGGGTGCTGCACACCACGGAGCG
GACGCTGGAGCGGCGCTGTCAGCAGCACCTGGGGCTGTCGTTCAGCGAGTGGCGCCAGCGGCTGCGCGTGGTGAAGGCGC
TCGCGAGGCTGGAGCAGGGCCACTCCGTGGAGGCCATCGCGCTCGACCTGGGCTACAGCAGCGCCTCCGCCTTCATCGCG
ATGTTCCGGCGGATGACAGGCACCACACCGGACAAGGTCCGGGGCCACGGCTTCGTGGCCTCGTGA

Upstream 100 bases:

>100_bases
GCCGTCCGCGGGTTTCCGATGAGAACTCATGCGAACATCCTGCGCATGGCGGGGCTGATTGATATAGCGAGATTCCGACA
ACCCATCCCGAGAAGGCGCC

Downstream 100 bases:

>100_bases
GGGTCGACTCCTGGAGCCGCCCGAAAGAAAACGAGGGCCGCGCCCCCCTTGGAATGGGCGCGGCCCTCACGTGCGGCATC
GAAGGGTTGAAGGACTACTC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 261; Mature: 260

Protein sequence:

>261_residues
MAKQLQVPFTTNLPHPVYFRTASLPAAATYPRHRHPWGEFVYAFSGVMELKLAGSHYLAPPQYGIWLPPDVEHRGMNRFE
ASHCSLYLAQAWCRGMPKTTCALAVSPLVKSLLEHLRAHELAQPRTSAERRLFRVLIDQLTLAPTHGSYLPMSDDSLLEP
VLTALEQHPEDERSLAEWARVLHTTERTLERRCQQHLGLSFSEWRQRLRVVKALARLEQGHSVEAIALDLGYSSASAFIA
MFRRMTGTTPDKVRGHGFVAS

Sequences:

>Translated_261_residues
MAKQLQVPFTTNLPHPVYFRTASLPAAATYPRHRHPWGEFVYAFSGVMELKLAGSHYLAPPQYGIWLPPDVEHRGMNRFE
ASHCSLYLAQAWCRGMPKTTCALAVSPLVKSLLEHLRAHELAQPRTSAERRLFRVLIDQLTLAPTHGSYLPMSDDSLLEP
VLTALEQHPEDERSLAEWARVLHTTERTLERRCQQHLGLSFSEWRQRLRVVKALARLEQGHSVEAIALDLGYSSASAFIA
MFRRMTGTTPDKVRGHGFVAS
>Mature_260_residues
AKQLQVPFTTNLPHPVYFRTASLPAAATYPRHRHPWGEFVYAFSGVMELKLAGSHYLAPPQYGIWLPPDVEHRGMNRFEA
SHCSLYLAQAWCRGMPKTTCALAVSPLVKSLLEHLRAHELAQPRTSAERRLFRVLIDQLTLAPTHGSYLPMSDDSLLEPV
LTALEQHPEDERSLAEWARVLHTTERTLERRCQQHLGLSFSEWRQRLRVVKALARLEQGHSVEAIALDLGYSSASAFIAM
FRRMTGTTPDKVRGHGFVAS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788091, Length=224, Percent_Identity=33.4821428571429, Blast_Score=134, Evalue=7e-33,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding [H]

EC number: NA

Molecular weight: Translated: 29516; Mature: 29385

Theoretical pI: Translated: 9.16; Mature: 9.16

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKQLQVPFTTNLPHPVYFRTASLPAAATYPRHRHPWGEFVYAFSGVMELKLAGSHYLAP
CCCCCCCCCCCCCCCCEEEEECCCCCHHCCCCCCCCHHHHHHHHHHHHHEEECCCCCCCC
PQYGIWLPPDVEHRGMNRFEASHCSLYLAQAWCRGMPKTTCALAVSPLVKSLLEHLRAHE
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
LAQPRTSAERRLFRVLIDQLTLAPTHGSYLPMSDDSLLEPVLTALEQHPEDERSLAEWAR
HCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
VLHTTERTLERRCQQHLGLSFSEWRQRLRVVKALARLEQGHSVEAIALDLGYSSASAFIA
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHH
MFRRMTGTTPDKVRGHGFVAS
HHHHHHCCCCHHHCCCCCCCC
>Mature Secondary Structure 
AKQLQVPFTTNLPHPVYFRTASLPAAATYPRHRHPWGEFVYAFSGVMELKLAGSHYLAP
CCCCCCCCCCCCCCCEEEEECCCCCHHCCCCCCCCHHHHHHHHHHHHHEEECCCCCCCC
PQYGIWLPPDVEHRGMNRFEASHCSLYLAQAWCRGMPKTTCALAVSPLVKSLLEHLRAHE
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
LAQPRTSAERRLFRVLIDQLTLAPTHGSYLPMSDDSLLEPVLTALEQHPEDERSLAEWAR
HCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
VLHTTERTLERRCQQHLGLSFSEWRQRLRVVKALARLEQGHSVEAIALDLGYSSASAFIA
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHH
MFRRMTGTTPDKVRGHGFVAS
HHHHHHCCCCHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]