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The map label for this gene is ybgF [H]

Identifier: 108563896

GI number: 108563896

Start: 1532311

End: 1533738

Strand: Reverse

Name: ybgF [H]

Synonym: HPAG1_1471

Alternate gene names: 108563896

Gene position: 1533738-1532311 (Counterclockwise)

Preceding gene: 108563900

Following gene: 108563895

Centisome position: 96.08

GC content: 43.35

Gene sequence:

>1428_bases
ATGAAAGACAACACAACCTTAAGCAGGGACATTGGCTTCAACCAGTTGATGATGATCGCTTTAGGGGGGACGATTGGCAC
CGGGCTTTTTGTAGGCACAGGGGGGAATATCGCTAGTGCGGGCCCTTTAGCCACGCTTTTAGCGTATTTGATTGGAGGAA
TTATTGTCTATTCTATTGTTTTATCTTTGGGGGAATTAGCGAGTGTGTATCCCACCACAGGGAGTTTTGGGGATTATGCG
AGCCGTTTTATTAACCCAAGCACAGGGTATATGGTCTTTTGGATGTATTGGCTGAGCTGGGTTTTAACCGTGGCAGTGGA
ATACATTGCCATAGGCTTGCTTATGCAACGATGGTTCCCGACTGTTCCTGTATATGTGTGGGTCATCGCATGCATTGCGC
TTTTATTTTTATTGAATTTCTTTTCGGTTAAGATTTTTGCCACAGGCGAATTTTTGCTCAGCACCATCAAGGTTTTAGCG
GTCTTTGTGTTTATTGTGCTTGGGGGCATTGGCATTGTTTATTCGTTTTATTTGCATGGATTTGAAGGCGTGTTTGCTAA
TTTCTATTTTAATGGGGAGACTCAAGGGCTAGAAATAAGGCTTTTTCCTAAAGGAGTGGAGGCGTTCTTTGGGGCGATTT
TAGCGGTGATTTTTGCTTACACAGGCACAGAGATTATCGGCGTTGCAACAGGAGAAACTAAAGACGCGAAAAAAGTCATG
CCTAAAGCGATTAAGGCGACTTTATGGCGGATCGTGTTTTTCTTTTTAGGGGCGGTGTTTGTGGTATCGGTGTTTTTACC
CATGACAGATAGCGGTTTGACGCAAAGCCCTTTTGTGAGTGCTTTAGAAAAAATCCCCTTACCCTTTTTAGGCGTGGGTA
TCCCTTATGCGGCAGATATTATGAATTTTGTCATCATAACTGCGATTTTATCCACCGCTAATTCTGGGTTATACGCTTCA
GAGAGGATGATTTATGGCTTAAGCCAAAAAAAGATGTTTTTCCCTCTTTTTGCTAAACTCAACGCCTCTGGCACGCCCAC
TTATGCTTTGTATTTATCTTTAGGGGTTACACTTATTGGCATGCTCACCGAAGCGTTTGCACCAGAAAAAATCATGGCAA
GCTTGATCAATGTGGTGAGTTTTATGGTGATTATTGTATGGATCAGTATCAGCGTAGCGCAATACCGCTTCAGGAAAGAG
TATCTGGCTTTGGGAAAATCCTTAAAAGATCTGCCTTATAAAGCCCCCCTTAATCCTTTGATCCAAATCATTGGCATCAG
CGGGTGCTTGGTGGGGCTTATAGGAGCGTATATGGATGCGAATGAACGCATTGGAGGGTATCTCACGCTAGTGTTTATGG
GGCTTTGCTATGGGGCGTATTATTTGAGTAAGGACAAATGGGGCTATCAGCAAGAAAAAGGAATTTAA

Upstream 100 bases:

>100_bases
ACAATGAAATTAATTTTGTTTGTTATTCATTTTCTTATTATTTTGTAATCGTTGGTTGGGATTTAAAATATAATTCACTT
AACGATTAAAGGATGCGTTT

Downstream 100 bases:

>100_bases
AGGAGTTATAAAATGATTTTAGTAGGATTGGAAGCGGAATTAGGAGCGTCAAAAAGAGGCACCGATAAAGGGGTTAGGCG
TTTGAGAGAGGCTTTAAGCG

Product: amino acid permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 475; Mature: 475

Protein sequence:

>475_residues
MKDNTTLSRDIGFNQLMMIALGGTIGTGLFVGTGGNIASAGPLATLLAYLIGGIIVYSIVLSLGELASVYPTTGSFGDYA
SRFINPSTGYMVFWMYWLSWVLTVAVEYIAIGLLMQRWFPTVPVYVWVIACIALLFLLNFFSVKIFATGEFLLSTIKVLA
VFVFIVLGGIGIVYSFYLHGFEGVFANFYFNGETQGLEIRLFPKGVEAFFGAILAVIFAYTGTEIIGVATGETKDAKKVM
PKAIKATLWRIVFFFLGAVFVVSVFLPMTDSGLTQSPFVSALEKIPLPFLGVGIPYAADIMNFVIITAILSTANSGLYAS
ERMIYGLSQKKMFFPLFAKLNASGTPTYALYLSLGVTLIGMLTEAFAPEKIMASLINVVSFMVIIVWISISVAQYRFRKE
YLALGKSLKDLPYKAPLNPLIQIIGISGCLVGLIGAYMDANERIGGYLTLVFMGLCYGAYYLSKDKWGYQQEKGI

Sequences:

>Translated_475_residues
MKDNTTLSRDIGFNQLMMIALGGTIGTGLFVGTGGNIASAGPLATLLAYLIGGIIVYSIVLSLGELASVYPTTGSFGDYA
SRFINPSTGYMVFWMYWLSWVLTVAVEYIAIGLLMQRWFPTVPVYVWVIACIALLFLLNFFSVKIFATGEFLLSTIKVLA
VFVFIVLGGIGIVYSFYLHGFEGVFANFYFNGETQGLEIRLFPKGVEAFFGAILAVIFAYTGTEIIGVATGETKDAKKVM
PKAIKATLWRIVFFFLGAVFVVSVFLPMTDSGLTQSPFVSALEKIPLPFLGVGIPYAADIMNFVIITAILSTANSGLYAS
ERMIYGLSQKKMFFPLFAKLNASGTPTYALYLSLGVTLIGMLTEAFAPEKIMASLINVVSFMVIIVWISISVAQYRFRKE
YLALGKSLKDLPYKAPLNPLIQIIGISGCLVGLIGAYMDANERIGGYLTLVFMGLCYGAYYLSKDKWGYQQEKGI
>Mature_475_residues
MKDNTTLSRDIGFNQLMMIALGGTIGTGLFVGTGGNIASAGPLATLLAYLIGGIIVYSIVLSLGELASVYPTTGSFGDYA
SRFINPSTGYMVFWMYWLSWVLTVAVEYIAIGLLMQRWFPTVPVYVWVIACIALLFLLNFFSVKIFATGEFLLSTIKVLA
VFVFIVLGGIGIVYSFYLHGFEGVFANFYFNGETQGLEIRLFPKGVEAFFGAILAVIFAYTGTEIIGVATGETKDAKKVM
PKAIKATLWRIVFFFLGAVFVVSVFLPMTDSGLTQSPFVSALEKIPLPFLGVGIPYAADIMNFVIITAILSTANSGLYAS
ERMIYGLSQKKMFFPLFAKLNASGTPTYALYLSLGVTLIGMLTEAFAPEKIMASLINVVSFMVIIVWISISVAQYRFRKE
YLALGKSLKDLPYKAPLNPLIQIIGISGCLVGLIGAYMDANERIGGYLTLVFMGLCYGAYYLSKDKWGYQQEKGI

Specific function: Transporter For The Intake Of S-Methylmethionine. [C]

COG id: COG0833

COG function: function code E; Amino acid transporters

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the amino acid-polyamine-organocation (APC) superfamily [H]

Homologues:

Organism=Escherichia coli, GI87081708, Length=474, Percent_Identity=41.5611814345992, Blast_Score=380, Evalue=1e-106,
Organism=Escherichia coli, GI1788480, Length=435, Percent_Identity=36.7816091954023, Blast_Score=286, Evalue=3e-78,
Organism=Escherichia coli, GI48994972, Length=457, Percent_Identity=32.8227571115974, Blast_Score=234, Evalue=8e-63,
Organism=Escherichia coli, GI87081915, Length=414, Percent_Identity=34.5410628019324, Blast_Score=227, Evalue=1e-60,
Organism=Escherichia coli, GI1790653, Length=469, Percent_Identity=31.9829424307036, Blast_Score=221, Evalue=1e-58,
Organism=Escherichia coli, GI1786789, Length=432, Percent_Identity=32.6388888888889, Blast_Score=216, Evalue=3e-57,
Organism=Escherichia coli, GI1789017, Length=403, Percent_Identity=33.2506203473945, Blast_Score=211, Evalue=1e-55,
Organism=Escherichia coli, GI1786602, Length=443, Percent_Identity=32.9571106094808, Blast_Score=198, Evalue=7e-52,
Organism=Escherichia coli, GI1786302, Length=465, Percent_Identity=29.8924731182796, Blast_Score=197, Evalue=1e-51,
Organism=Escherichia coli, GI87081869, Length=380, Percent_Identity=28.1578947368421, Blast_Score=83, Evalue=4e-17,
Organism=Escherichia coli, GI87082250, Length=362, Percent_Identity=26.7955801104972, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI87082023, Length=370, Percent_Identity=25.9459459459459, Blast_Score=64, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6320772, Length=431, Percent_Identity=31.7865429234339, Blast_Score=225, Evalue=1e-59,
Organism=Saccharomyces cerevisiae, GI6324061, Length=420, Percent_Identity=32.3809523809524, Blast_Score=213, Evalue=5e-56,
Organism=Saccharomyces cerevisiae, GI6324553, Length=503, Percent_Identity=29.6222664015905, Blast_Score=198, Evalue=2e-51,
Organism=Saccharomyces cerevisiae, GI6324059, Length=430, Percent_Identity=31.3953488372093, Blast_Score=190, Evalue=4e-49,
Organism=Saccharomyces cerevisiae, GI6321629, Length=498, Percent_Identity=26.9076305220884, Blast_Score=189, Evalue=6e-49,
Organism=Saccharomyces cerevisiae, GI6322892, Length=434, Percent_Identity=30.6451612903226, Blast_Score=188, Evalue=1e-48,
Organism=Saccharomyces cerevisiae, GI6322967, Length=450, Percent_Identity=30.2222222222222, Blast_Score=176, Evalue=9e-45,
Organism=Saccharomyces cerevisiae, GI6324990, Length=431, Percent_Identity=30.8584686774942, Blast_Score=173, Evalue=7e-44,
Organism=Saccharomyces cerevisiae, GI6319824, Length=429, Percent_Identity=28.9044289044289, Blast_Score=166, Evalue=5e-42,
Organism=Saccharomyces cerevisiae, GI6319608, Length=443, Percent_Identity=25.7336343115124, Blast_Score=165, Evalue=2e-41,
Organism=Saccharomyces cerevisiae, GI6324924, Length=488, Percent_Identity=26.6393442622951, Blast_Score=162, Evalue=1e-40,
Organism=Saccharomyces cerevisiae, GI6324981, Length=446, Percent_Identity=30.4932735426009, Blast_Score=160, Evalue=4e-40,
Organism=Saccharomyces cerevisiae, GI6320717, Length=429, Percent_Identity=27.039627039627, Blast_Score=160, Evalue=6e-40,
Organism=Saccharomyces cerevisiae, GI6321053, Length=472, Percent_Identity=26.271186440678, Blast_Score=157, Evalue=3e-39,
Organism=Saccharomyces cerevisiae, GI6319543, Length=433, Percent_Identity=26.0969976905312, Blast_Score=156, Evalue=5e-39,
Organism=Saccharomyces cerevisiae, GI6320251, Length=429, Percent_Identity=26.3403263403263, Blast_Score=156, Evalue=6e-39,
Organism=Saccharomyces cerevisiae, GI6319542, Length=430, Percent_Identity=26.5116279069767, Blast_Score=145, Evalue=2e-35,
Organism=Saccharomyces cerevisiae, GI6320364, Length=496, Percent_Identity=23.3870967741935, Blast_Score=103, Evalue=5e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004841
- InterPro:   IPR002293
- InterPro:   IPR004840 [H]

Pfam domain/function: PF00324 AA_permease [H]

EC number: NA

Molecular weight: Translated: 51913; Mature: 51913

Theoretical pI: Translated: 8.96; Mature: 8.96

Prosite motif: PS00218 AMINO_ACID_PERMEASE_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDNTTLSRDIGFNQLMMIALGGTIGTGLFVGTGGNIASAGPLATLLAYLIGGIIVYSIV
CCCCCCCHHCCCHHHHHHHHCCCHHHCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHH
LSLGELASVYPTTGSFGDYASRFINPSTGYMVFWMYWLSWVLTVAVEYIAIGLLMQRWFP
HHHHHHHHHCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
TVPVYVWVIACIALLFLLNFFSVKIFATGEFLLSTIKVLAVFVFIVLGGIGIVYSFYLHG
CHHHHHHHHHHHHHHHHHHHHHEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FEGVFANFYFNGETQGLEIRLFPKGVEAFFGAILAVIFAYTGTEIIGVATGETKDAKKVM
HHHHHEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHH
PKAIKATLWRIVFFFLGAVFVVSVFLPMTDSGLTQSPFVSALEKIPLPFLGVGIPYAADI
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHH
MNFVIITAILSTANSGLYASERMIYGLSQKKMFFPLFAKLNASGTPTYALYLSLGVTLIG
HHHHHHHHHHHHCCCCCCHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
MLTEAFAPEKIMASLINVVSFMVIIVWISISVAQYRFRKEYLALGKSLKDLPYKAPLNPL
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCHHHH
IQIIGISGCLVGLIGAYMDANERIGGYLTLVFMGLCYGAYYLSKDKWGYQQEKGI
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCC
>Mature Secondary Structure
MKDNTTLSRDIGFNQLMMIALGGTIGTGLFVGTGGNIASAGPLATLLAYLIGGIIVYSIV
CCCCCCCHHCCCHHHHHHHHCCCHHHCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHH
LSLGELASVYPTTGSFGDYASRFINPSTGYMVFWMYWLSWVLTVAVEYIAIGLLMQRWFP
HHHHHHHHHCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
TVPVYVWVIACIALLFLLNFFSVKIFATGEFLLSTIKVLAVFVFIVLGGIGIVYSFYLHG
CHHHHHHHHHHHHHHHHHHHHHEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FEGVFANFYFNGETQGLEIRLFPKGVEAFFGAILAVIFAYTGTEIIGVATGETKDAKKVM
HHHHHEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHH
PKAIKATLWRIVFFFLGAVFVVSVFLPMTDSGLTQSPFVSALEKIPLPFLGVGIPYAADI
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHH
MNFVIITAILSTANSGLYASERMIYGLSQKKMFFPLFAKLNASGTPTYALYLSLGVTLIG
HHHHHHHHHHHHCCCCCCHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
MLTEAFAPEKIMASLINVVSFMVIIVWISISVAQYRFRKEYLALGKSLKDLPYKAPLNPL
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCHHHH
IQIIGISGCLVGLIGAYMDANERIGGYLTLVFMGLCYGAYYLSKDKWGYQQEKGI
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]