Definition Helicobacter pylori HPAG1 chromosome, complete genome.
Accession NC_008086
Length 1,596,366

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The map label for this gene is 108563784

Identifier: 108563784

GI number: 108563784

Start: 1410157

End: 1412718

Strand: Reverse

Name: 108563784

Synonym: HPAG1_1359

Alternate gene names: NA

Gene position: 1412718-1410157 (Counterclockwise)

Preceding gene: 108563785

Following gene: 108563781

Centisome position: 88.5

GC content: 35.79

Gene sequence:

>2562_bases
ATGCTTTTAGATTGCAGCAATCTCAATGAAGAACCCCTAAAATCTAGCGTAGCCAAAGCCTTTTTTGAAAACTTTGACTT
TAGCGGAGATAAAATTGATTTTATCATCACTTACAGCCATAAGAACAAAGGCAAGCCTTTATGGGTTGAGCCGATTTTAT
GGGCAGAAGGTAAGAAAGGCAAGAGTGAGCTTTTTAAATCTTTAGCCCAACTCATTCTAACCATAGGTAAGCATAAGTTT
TATACGCATTTCCCCCCACCATATTTAGGGGCGTTTGATGCGTTTAGTTTTCTTTTTGTGGAATATCACAAATTGGATTT
TATTTTTACACGAAGCGATATAGATTTTTCTGTAACTCCAAGCAACCATAACACCGAGAGTTTTAAACACCTACTCAATG
AGCTTACCCCACTCTTAGAAAAAGAAGCTTCAATCTTTGATTATGAAACTCAAAATAAAGAACTCAAAGCCTTTATTAAA
GATAATTTACTCTATTCTAAACGCTCTAAAATTCCTGTAGATAAGAATAATTTCGTGCATGTGTATTTCAAATGGGTAGA
ACATGTTAAGCCTAGCATTTCAATTGAGTGGCAACAGGCTAGAAAACAAGGCATTTTAGACGCTGATTTTTACTTAGCGG
ATTTATTAAGCGAGAGTAATGAGACCATTTTAGAAAGCCTTAACACCATTTTAAAAGTCAATCATTACAAATTCAATAAG
AAGTTAAATAATTTTTGGGCGTTTAATTTTGATGAAACTTCATTTAACGACAAGCAAAAAGCCCACCAAACCTTTTGGAA
CATCTATGAACGACCACCTAAAAGAGAATTTTGGGACTACATCATAGAAAGGCGTGATTTATTGGTTTCAAATGATATTA
GAGAAAGAAAGGGGGCGTTTTTCACTCCTAAGATTTGGGTAGAAAAGAGCCAAGAATATTTAGCCAAAATCTTAGGGCAA
GATTATCAAGATGAATACATCATTTGGGATTGTGCTGGGGGGACTGGTAATTTACTGAGTGGCTTAATTAACAAAGCGAA
TTTATACCTCTCTACTTTGGATAAAAGCGATGTGTCAATCGTGAAAGAACGCATTAAAAATGGAGCGAAGCTTTTAGAAA
ACCATGTCTTTCAATTTGACTTTTTAAACGATGATTTTTATAGTGAAAAAGTGCCTAAAAGCCTACAAGAAATTTTAAAA
GACAAAGAGAAGTTAAAAAAGCTCATTATCTATATCAACCCGCCCTATGCGGAAGCGGGCAATAAAGCTAAAATGAGCGG
CACAGGCGAACACAAAGCCAAAGTGGCACGAGACAATCTCATCTGTGAAAAATACAAAAATGAATTAGGCAAGGCTAATA
ATGAAGTTTTTGCACAATTTTTCATGCGTATTTACAAAGAATTAAACGGCGTAATCTTAGCAAGTTTTTCAAAGTTGAAA
AACTTGCTAGGGTCTAATTTTAAAAAATTTAGAGAAGTCTTTAAAGCAGAGTTTAAGGGGGGGTTTATGGTGCCAGCAGA
CACTTTTGATAATGTTAAGGGGCAATTTCCTATCGGCTTTTTAGTGTGGGATACAAGCTCTATTCTTCCTAAAGAAAACC
CCCTAAATTTAGGGGGCAACTATAAAAAAGAGAAACAAAACTCCAATTTAATCTTAGACCAAGACAATTTGAAGGATAAT
CCCTTGAAAGAGCATTTTTACGCTGTTAGTTTAGAAATATTTGATAGTTTCGGCGGATTTTTAGGCAGTAAAAAAATATA
CACTCACACAATAGACAAAATGCTTACTTTAGCGGATTATTTACAAAAATTTCAACCAACAAAAAAAGATACTACTCTCG
GTTATTTAGACCCTGGTCGCAATAGTTTTCAACATCAAAATCTAATTCATATTAGCATTATTGACAAATCAAAACAATCG
CATGTAAAGTATTTTCCAATAATCACGCCTACAATTTTGTTAGTATCTATATTTTTCTCTGTCCGCCATTGTATCAAAGC
CACATGGCAAAACGATAGAGACCAGTTTTACGCCCCCTACAACGATACATGGCAAGATGATAACGAATTTAAAAACAACG
CTCTTGCTTTCATGCTTTTTCACACACAAAACCGCATTACCAGCACTCAAGGGACTAACCATTTTATCCCCTTTAGCGAA
ACTGAAGTCAATGCCAAAGAAAGATATTTTAGCCACGCTCTATTAGAGTTTTTAAAAGGCGGGATAAAAGAGGAGAGCGA
TAGCCTCTTTTTAAACGACAAAAAAGAAAACAAGCCCCTGAAATTCAGCCCGAGCGCTTCAAGGGTGTTTGAAGCTGGCA
GAGAGATCTATCGTTATTACCACACACAAGATTTCACAAACCGCCCCTATAACGCTAACGCAAGCCTTTATGACATCAAA
GAATTTTTTCAAGGCCGTAACGCGCAAGGCAAATTAAATTTACCCGCTAAAGCTAAAGATGAATATTACAAACAGCTTTA
CGCTAACTTGCAAGACGCCCTAAAAGATCTCGCCAAAGAAATACAGCCTAAAGTCTATGAATACGGGTTTTTAAGGGAGT
AG

Upstream 100 bases:

>100_bases
AGCGGGCAAGGATATAGAAAAACTGGTTTTGGCTAGGGCTTTAAAACTCGTTTTAGAAGATCGGGTGTTTGTGCATGAAA
ACAAAACGGTGGTGTTTTGA

Downstream 100 bases:

>100_bases
TTTTTAAGACAAATAATCAAAAAGCTAGAGCAAGCGGTATTTTTTAAAAGCACTCTATGAGGGGATTTAGTTTTATAGAG
GGGAGAATTATTTCTATCCC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 853; Mature: 853

Protein sequence:

>853_residues
MLLDCSNLNEEPLKSSVAKAFFENFDFSGDKIDFIITYSHKNKGKPLWVEPILWAEGKKGKSELFKSLAQLILTIGKHKF
YTHFPPPYLGAFDAFSFLFVEYHKLDFIFTRSDIDFSVTPSNHNTESFKHLLNELTPLLEKEASIFDYETQNKELKAFIK
DNLLYSKRSKIPVDKNNFVHVYFKWVEHVKPSISIEWQQARKQGILDADFYLADLLSESNETILESLNTILKVNHYKFNK
KLNNFWAFNFDETSFNDKQKAHQTFWNIYERPPKREFWDYIIERRDLLVSNDIRERKGAFFTPKIWVEKSQEYLAKILGQ
DYQDEYIIWDCAGGTGNLLSGLINKANLYLSTLDKSDVSIVKERIKNGAKLLENHVFQFDFLNDDFYSEKVPKSLQEILK
DKEKLKKLIIYINPPYAEAGNKAKMSGTGEHKAKVARDNLICEKYKNELGKANNEVFAQFFMRIYKELNGVILASFSKLK
NLLGSNFKKFREVFKAEFKGGFMVPADTFDNVKGQFPIGFLVWDTSSILPKENPLNLGGNYKKEKQNSNLILDQDNLKDN
PLKEHFYAVSLEIFDSFGGFLGSKKIYTHTIDKMLTLADYLQKFQPTKKDTTLGYLDPGRNSFQHQNLIHISIIDKSKQS
HVKYFPIITPTILLVSIFFSVRHCIKATWQNDRDQFYAPYNDTWQDDNEFKNNALAFMLFHTQNRITSTQGTNHFIPFSE
TEVNAKERYFSHALLEFLKGGIKEESDSLFLNDKKENKPLKFSPSASRVFEAGREIYRYYHTQDFTNRPYNANASLYDIK
EFFQGRNAQGKLNLPAKAKDEYYKQLYANLQDALKDLAKEIQPKVYEYGFLRE

Sequences:

>Translated_853_residues
MLLDCSNLNEEPLKSSVAKAFFENFDFSGDKIDFIITYSHKNKGKPLWVEPILWAEGKKGKSELFKSLAQLILTIGKHKF
YTHFPPPYLGAFDAFSFLFVEYHKLDFIFTRSDIDFSVTPSNHNTESFKHLLNELTPLLEKEASIFDYETQNKELKAFIK
DNLLYSKRSKIPVDKNNFVHVYFKWVEHVKPSISIEWQQARKQGILDADFYLADLLSESNETILESLNTILKVNHYKFNK
KLNNFWAFNFDETSFNDKQKAHQTFWNIYERPPKREFWDYIIERRDLLVSNDIRERKGAFFTPKIWVEKSQEYLAKILGQ
DYQDEYIIWDCAGGTGNLLSGLINKANLYLSTLDKSDVSIVKERIKNGAKLLENHVFQFDFLNDDFYSEKVPKSLQEILK
DKEKLKKLIIYINPPYAEAGNKAKMSGTGEHKAKVARDNLICEKYKNELGKANNEVFAQFFMRIYKELNGVILASFSKLK
NLLGSNFKKFREVFKAEFKGGFMVPADTFDNVKGQFPIGFLVWDTSSILPKENPLNLGGNYKKEKQNSNLILDQDNLKDN
PLKEHFYAVSLEIFDSFGGFLGSKKIYTHTIDKMLTLADYLQKFQPTKKDTTLGYLDPGRNSFQHQNLIHISIIDKSKQS
HVKYFPIITPTILLVSIFFSVRHCIKATWQNDRDQFYAPYNDTWQDDNEFKNNALAFMLFHTQNRITSTQGTNHFIPFSE
TEVNAKERYFSHALLEFLKGGIKEESDSLFLNDKKENKPLKFSPSASRVFEAGREIYRYYHTQDFTNRPYNANASLYDIK
EFFQGRNAQGKLNLPAKAKDEYYKQLYANLQDALKDLAKEIQPKVYEYGFLRE
>Mature_853_residues
MLLDCSNLNEEPLKSSVAKAFFENFDFSGDKIDFIITYSHKNKGKPLWVEPILWAEGKKGKSELFKSLAQLILTIGKHKF
YTHFPPPYLGAFDAFSFLFVEYHKLDFIFTRSDIDFSVTPSNHNTESFKHLLNELTPLLEKEASIFDYETQNKELKAFIK
DNLLYSKRSKIPVDKNNFVHVYFKWVEHVKPSISIEWQQARKQGILDADFYLADLLSESNETILESLNTILKVNHYKFNK
KLNNFWAFNFDETSFNDKQKAHQTFWNIYERPPKREFWDYIIERRDLLVSNDIRERKGAFFTPKIWVEKSQEYLAKILGQ
DYQDEYIIWDCAGGTGNLLSGLINKANLYLSTLDKSDVSIVKERIKNGAKLLENHVFQFDFLNDDFYSEKVPKSLQEILK
DKEKLKKLIIYINPPYAEAGNKAKMSGTGEHKAKVARDNLICEKYKNELGKANNEVFAQFFMRIYKELNGVILASFSKLK
NLLGSNFKKFREVFKAEFKGGFMVPADTFDNVKGQFPIGFLVWDTSSILPKENPLNLGGNYKKEKQNSNLILDQDNLKDN
PLKEHFYAVSLEIFDSFGGFLGSKKIYTHTIDKMLTLADYLQKFQPTKKDTTLGYLDPGRNSFQHQNLIHISIIDKSKQS
HVKYFPIITPTILLVSIFFSVRHCIKATWQNDRDQFYAPYNDTWQDDNEFKNNALAFMLFHTQNRITSTQGTNHFIPFSE
TEVNAKERYFSHALLEFLKGGIKEESDSLFLNDKKENKPLKFSPSASRVFEAGREIYRYYHTQDFTNRPYNANASLYDIK
EFFQGRNAQGKLNLPAKAKDEYYKQLYANLQDALKDLAKEIQPKVYEYGFLRE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 99525; Mature: 99525

Theoretical pI: Translated: 8.91; Mature: 8.91

Prosite motif: PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLDCSNLNEEPLKSSVAKAFFENFDFSGDKIDFIITYSHKNKGKPLWVEPILWAEGKKG
CEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCEEECCEEECCCCCC
KSELFKSLAQLILTIGKHKFYTHFPPPYLGAFDAFSFLFVEYHKLDFIFTRSDIDFSVTP
HHHHHHHHHHHHHHHCCCCCEECCCCCHHHHHHHHHHHHHHHHHEEEEEEECCCCEEECC
SNHNTESFKHLLNELTPLLEKEASIFDYETQNKELKAFIKDNLLYSKRSKIPVDKNNFVH
CCCCHHHHHHHHHHHHHHHHHCCHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEE
VYFKWVEHVKPSISIEWQQARKQGILDADFYLADLLSESNETILESLNTILKVNHYKFNK
EEEHHHHHCCCCCEEEHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC
KLNNFWAFNFDETSFNDKQKAHQTFWNIYERPPKREFWDYIIERRDLLVSNDIRERKGAF
CCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHCCCC
FTPKIWVEKSQEYLAKILGQDYQDEYIIWDCAGGTGNLLSGLINKANLYLSTLDKSDVSI
CCCHHHHHCHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHEEEEECCCCHHHH
VKERIKNGAKLLENHVFQFDFLNDDFYSEKVPKSLQEILKDKEKLKKLIIYINPPYAEAG
HHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCC
NKAKMSGTGEHKAKVARDNLICEKYKNELGKANNEVFAQFFMRIYKELNGVILASFSKLK
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCEEEEHHHHHH
NLLGSNFKKFREVFKAEFKGGFMVPADTFDNVKGQFPIGFLVWDTSSILPKENPLNLGGN
HHHCCCHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCC
YKKEKQNSNLILDQDNLKDNPLKEHFYAVSLEIFDSFGGFLGSKKIYTHTIDKMLTLADY
CCCCCCCCCEEEECCCCCCCCHHHHHHEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
LQKFQPTKKDTTLGYLDPGRNSFQHQNLIHISIIDKSKQSHVKYFPIITPTILLVSIFFS
HHHHCCCCCCCEEEEECCCCCCCCCCCEEEEEEECCCCCCCEEEECHHHHHHHHHHHHHH
VRHCIKATWQNDRDQFYAPYNDTWQDDNEFKNNALAFMLFHTQNRITSTQGTNHFIPFSE
HHHHHHHHCCCCCCCEECCCCCCCCCCCHHCCCEEEEEEEECCCCEECCCCCCCCCCCCC
TEVNAKERYFSHALLEFLKGGIKEESDSLFLNDKKENKPLKFSPSASRVFEAGREIYRYY
CCCCHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCEEECCCHHHHHHHHHHHHHHH
HTQDFTNRPYNANASLYDIKEFFQGRNAQGKLNLPAKAKDEYYKQLYANLQDALKDLAKE
HCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHH
IQPKVYEYGFLRE
HCCHHHHCCCCCC
>Mature Secondary Structure
MLLDCSNLNEEPLKSSVAKAFFENFDFSGDKIDFIITYSHKNKGKPLWVEPILWAEGKKG
CEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCEEECCEEECCCCCC
KSELFKSLAQLILTIGKHKFYTHFPPPYLGAFDAFSFLFVEYHKLDFIFTRSDIDFSVTP
HHHHHHHHHHHHHHHCCCCCEECCCCCHHHHHHHHHHHHHHHHHEEEEEEECCCCEEECC
SNHNTESFKHLLNELTPLLEKEASIFDYETQNKELKAFIKDNLLYSKRSKIPVDKNNFVH
CCCCHHHHHHHHHHHHHHHHHCCHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEE
VYFKWVEHVKPSISIEWQQARKQGILDADFYLADLLSESNETILESLNTILKVNHYKFNK
EEEHHHHHCCCCCEEEHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC
KLNNFWAFNFDETSFNDKQKAHQTFWNIYERPPKREFWDYIIERRDLLVSNDIRERKGAF
CCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHCCCC
FTPKIWVEKSQEYLAKILGQDYQDEYIIWDCAGGTGNLLSGLINKANLYLSTLDKSDVSI
CCCHHHHHCHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHEEEEECCCCHHHH
VKERIKNGAKLLENHVFQFDFLNDDFYSEKVPKSLQEILKDKEKLKKLIIYINPPYAEAG
HHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCC
NKAKMSGTGEHKAKVARDNLICEKYKNELGKANNEVFAQFFMRIYKELNGVILASFSKLK
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCEEEEHHHHHH
NLLGSNFKKFREVFKAEFKGGFMVPADTFDNVKGQFPIGFLVWDTSSILPKENPLNLGGN
HHHCCCHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCC
YKKEKQNSNLILDQDNLKDNPLKEHFYAVSLEIFDSFGGFLGSKKIYTHTIDKMLTLADY
CCCCCCCCCEEEECCCCCCCCHHHHHHEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
LQKFQPTKKDTTLGYLDPGRNSFQHQNLIHISIIDKSKQSHVKYFPIITPTILLVSIFFS
HHHHCCCCCCCEEEEECCCCCCCCCCCEEEEEEECCCCCCCEEEECHHHHHHHHHHHHHH
VRHCIKATWQNDRDQFYAPYNDTWQDDNEFKNNALAFMLFHTQNRITSTQGTNHFIPFSE
HHHHHHHHCCCCCCCEECCCCCCCCCCCHHCCCEEEEEEEECCCCEECCCCCCCCCCCCC
TEVNAKERYFSHALLEFLKGGIKEESDSLFLNDKKENKPLKFSPSASRVFEAGREIYRYY
CCCCHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCEEECCCHHHHHHHHHHHHHHH
HTQDFTNRPYNANASLYDIKEFFQGRNAQGKLNLPAKAKDEYYKQLYANLQDALKDLAKE
HCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHH
IQPKVYEYGFLRE
HCCHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA