| Definition | Helicobacter pylori HPAG1 chromosome, complete genome. |
|---|---|
| Accession | NC_008086 |
| Length | 1,596,366 |
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The map label for this gene is 108563784
Identifier: 108563784
GI number: 108563784
Start: 1410157
End: 1412718
Strand: Reverse
Name: 108563784
Synonym: HPAG1_1359
Alternate gene names: NA
Gene position: 1412718-1410157 (Counterclockwise)
Preceding gene: 108563785
Following gene: 108563781
Centisome position: 88.5
GC content: 35.79
Gene sequence:
>2562_bases ATGCTTTTAGATTGCAGCAATCTCAATGAAGAACCCCTAAAATCTAGCGTAGCCAAAGCCTTTTTTGAAAACTTTGACTT TAGCGGAGATAAAATTGATTTTATCATCACTTACAGCCATAAGAACAAAGGCAAGCCTTTATGGGTTGAGCCGATTTTAT GGGCAGAAGGTAAGAAAGGCAAGAGTGAGCTTTTTAAATCTTTAGCCCAACTCATTCTAACCATAGGTAAGCATAAGTTT TATACGCATTTCCCCCCACCATATTTAGGGGCGTTTGATGCGTTTAGTTTTCTTTTTGTGGAATATCACAAATTGGATTT TATTTTTACACGAAGCGATATAGATTTTTCTGTAACTCCAAGCAACCATAACACCGAGAGTTTTAAACACCTACTCAATG AGCTTACCCCACTCTTAGAAAAAGAAGCTTCAATCTTTGATTATGAAACTCAAAATAAAGAACTCAAAGCCTTTATTAAA GATAATTTACTCTATTCTAAACGCTCTAAAATTCCTGTAGATAAGAATAATTTCGTGCATGTGTATTTCAAATGGGTAGA ACATGTTAAGCCTAGCATTTCAATTGAGTGGCAACAGGCTAGAAAACAAGGCATTTTAGACGCTGATTTTTACTTAGCGG ATTTATTAAGCGAGAGTAATGAGACCATTTTAGAAAGCCTTAACACCATTTTAAAAGTCAATCATTACAAATTCAATAAG AAGTTAAATAATTTTTGGGCGTTTAATTTTGATGAAACTTCATTTAACGACAAGCAAAAAGCCCACCAAACCTTTTGGAA CATCTATGAACGACCACCTAAAAGAGAATTTTGGGACTACATCATAGAAAGGCGTGATTTATTGGTTTCAAATGATATTA GAGAAAGAAAGGGGGCGTTTTTCACTCCTAAGATTTGGGTAGAAAAGAGCCAAGAATATTTAGCCAAAATCTTAGGGCAA GATTATCAAGATGAATACATCATTTGGGATTGTGCTGGGGGGACTGGTAATTTACTGAGTGGCTTAATTAACAAAGCGAA TTTATACCTCTCTACTTTGGATAAAAGCGATGTGTCAATCGTGAAAGAACGCATTAAAAATGGAGCGAAGCTTTTAGAAA ACCATGTCTTTCAATTTGACTTTTTAAACGATGATTTTTATAGTGAAAAAGTGCCTAAAAGCCTACAAGAAATTTTAAAA GACAAAGAGAAGTTAAAAAAGCTCATTATCTATATCAACCCGCCCTATGCGGAAGCGGGCAATAAAGCTAAAATGAGCGG CACAGGCGAACACAAAGCCAAAGTGGCACGAGACAATCTCATCTGTGAAAAATACAAAAATGAATTAGGCAAGGCTAATA ATGAAGTTTTTGCACAATTTTTCATGCGTATTTACAAAGAATTAAACGGCGTAATCTTAGCAAGTTTTTCAAAGTTGAAA AACTTGCTAGGGTCTAATTTTAAAAAATTTAGAGAAGTCTTTAAAGCAGAGTTTAAGGGGGGGTTTATGGTGCCAGCAGA CACTTTTGATAATGTTAAGGGGCAATTTCCTATCGGCTTTTTAGTGTGGGATACAAGCTCTATTCTTCCTAAAGAAAACC CCCTAAATTTAGGGGGCAACTATAAAAAAGAGAAACAAAACTCCAATTTAATCTTAGACCAAGACAATTTGAAGGATAAT CCCTTGAAAGAGCATTTTTACGCTGTTAGTTTAGAAATATTTGATAGTTTCGGCGGATTTTTAGGCAGTAAAAAAATATA CACTCACACAATAGACAAAATGCTTACTTTAGCGGATTATTTACAAAAATTTCAACCAACAAAAAAAGATACTACTCTCG GTTATTTAGACCCTGGTCGCAATAGTTTTCAACATCAAAATCTAATTCATATTAGCATTATTGACAAATCAAAACAATCG CATGTAAAGTATTTTCCAATAATCACGCCTACAATTTTGTTAGTATCTATATTTTTCTCTGTCCGCCATTGTATCAAAGC CACATGGCAAAACGATAGAGACCAGTTTTACGCCCCCTACAACGATACATGGCAAGATGATAACGAATTTAAAAACAACG CTCTTGCTTTCATGCTTTTTCACACACAAAACCGCATTACCAGCACTCAAGGGACTAACCATTTTATCCCCTTTAGCGAA ACTGAAGTCAATGCCAAAGAAAGATATTTTAGCCACGCTCTATTAGAGTTTTTAAAAGGCGGGATAAAAGAGGAGAGCGA TAGCCTCTTTTTAAACGACAAAAAAGAAAACAAGCCCCTGAAATTCAGCCCGAGCGCTTCAAGGGTGTTTGAAGCTGGCA GAGAGATCTATCGTTATTACCACACACAAGATTTCACAAACCGCCCCTATAACGCTAACGCAAGCCTTTATGACATCAAA GAATTTTTTCAAGGCCGTAACGCGCAAGGCAAATTAAATTTACCCGCTAAAGCTAAAGATGAATATTACAAACAGCTTTA CGCTAACTTGCAAGACGCCCTAAAAGATCTCGCCAAAGAAATACAGCCTAAAGTCTATGAATACGGGTTTTTAAGGGAGT AG
Upstream 100 bases:
>100_bases AGCGGGCAAGGATATAGAAAAACTGGTTTTGGCTAGGGCTTTAAAACTCGTTTTAGAAGATCGGGTGTTTGTGCATGAAA ACAAAACGGTGGTGTTTTGA
Downstream 100 bases:
>100_bases TTTTTAAGACAAATAATCAAAAAGCTAGAGCAAGCGGTATTTTTTAAAAGCACTCTATGAGGGGATTTAGTTTTATAGAG GGGAGAATTATTTCTATCCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 853; Mature: 853
Protein sequence:
>853_residues MLLDCSNLNEEPLKSSVAKAFFENFDFSGDKIDFIITYSHKNKGKPLWVEPILWAEGKKGKSELFKSLAQLILTIGKHKF YTHFPPPYLGAFDAFSFLFVEYHKLDFIFTRSDIDFSVTPSNHNTESFKHLLNELTPLLEKEASIFDYETQNKELKAFIK DNLLYSKRSKIPVDKNNFVHVYFKWVEHVKPSISIEWQQARKQGILDADFYLADLLSESNETILESLNTILKVNHYKFNK KLNNFWAFNFDETSFNDKQKAHQTFWNIYERPPKREFWDYIIERRDLLVSNDIRERKGAFFTPKIWVEKSQEYLAKILGQ DYQDEYIIWDCAGGTGNLLSGLINKANLYLSTLDKSDVSIVKERIKNGAKLLENHVFQFDFLNDDFYSEKVPKSLQEILK DKEKLKKLIIYINPPYAEAGNKAKMSGTGEHKAKVARDNLICEKYKNELGKANNEVFAQFFMRIYKELNGVILASFSKLK NLLGSNFKKFREVFKAEFKGGFMVPADTFDNVKGQFPIGFLVWDTSSILPKENPLNLGGNYKKEKQNSNLILDQDNLKDN PLKEHFYAVSLEIFDSFGGFLGSKKIYTHTIDKMLTLADYLQKFQPTKKDTTLGYLDPGRNSFQHQNLIHISIIDKSKQS HVKYFPIITPTILLVSIFFSVRHCIKATWQNDRDQFYAPYNDTWQDDNEFKNNALAFMLFHTQNRITSTQGTNHFIPFSE TEVNAKERYFSHALLEFLKGGIKEESDSLFLNDKKENKPLKFSPSASRVFEAGREIYRYYHTQDFTNRPYNANASLYDIK EFFQGRNAQGKLNLPAKAKDEYYKQLYANLQDALKDLAKEIQPKVYEYGFLRE
Sequences:
>Translated_853_residues MLLDCSNLNEEPLKSSVAKAFFENFDFSGDKIDFIITYSHKNKGKPLWVEPILWAEGKKGKSELFKSLAQLILTIGKHKF YTHFPPPYLGAFDAFSFLFVEYHKLDFIFTRSDIDFSVTPSNHNTESFKHLLNELTPLLEKEASIFDYETQNKELKAFIK DNLLYSKRSKIPVDKNNFVHVYFKWVEHVKPSISIEWQQARKQGILDADFYLADLLSESNETILESLNTILKVNHYKFNK KLNNFWAFNFDETSFNDKQKAHQTFWNIYERPPKREFWDYIIERRDLLVSNDIRERKGAFFTPKIWVEKSQEYLAKILGQ DYQDEYIIWDCAGGTGNLLSGLINKANLYLSTLDKSDVSIVKERIKNGAKLLENHVFQFDFLNDDFYSEKVPKSLQEILK DKEKLKKLIIYINPPYAEAGNKAKMSGTGEHKAKVARDNLICEKYKNELGKANNEVFAQFFMRIYKELNGVILASFSKLK NLLGSNFKKFREVFKAEFKGGFMVPADTFDNVKGQFPIGFLVWDTSSILPKENPLNLGGNYKKEKQNSNLILDQDNLKDN PLKEHFYAVSLEIFDSFGGFLGSKKIYTHTIDKMLTLADYLQKFQPTKKDTTLGYLDPGRNSFQHQNLIHISIIDKSKQS HVKYFPIITPTILLVSIFFSVRHCIKATWQNDRDQFYAPYNDTWQDDNEFKNNALAFMLFHTQNRITSTQGTNHFIPFSE TEVNAKERYFSHALLEFLKGGIKEESDSLFLNDKKENKPLKFSPSASRVFEAGREIYRYYHTQDFTNRPYNANASLYDIK EFFQGRNAQGKLNLPAKAKDEYYKQLYANLQDALKDLAKEIQPKVYEYGFLRE >Mature_853_residues MLLDCSNLNEEPLKSSVAKAFFENFDFSGDKIDFIITYSHKNKGKPLWVEPILWAEGKKGKSELFKSLAQLILTIGKHKF YTHFPPPYLGAFDAFSFLFVEYHKLDFIFTRSDIDFSVTPSNHNTESFKHLLNELTPLLEKEASIFDYETQNKELKAFIK DNLLYSKRSKIPVDKNNFVHVYFKWVEHVKPSISIEWQQARKQGILDADFYLADLLSESNETILESLNTILKVNHYKFNK KLNNFWAFNFDETSFNDKQKAHQTFWNIYERPPKREFWDYIIERRDLLVSNDIRERKGAFFTPKIWVEKSQEYLAKILGQ DYQDEYIIWDCAGGTGNLLSGLINKANLYLSTLDKSDVSIVKERIKNGAKLLENHVFQFDFLNDDFYSEKVPKSLQEILK DKEKLKKLIIYINPPYAEAGNKAKMSGTGEHKAKVARDNLICEKYKNELGKANNEVFAQFFMRIYKELNGVILASFSKLK NLLGSNFKKFREVFKAEFKGGFMVPADTFDNVKGQFPIGFLVWDTSSILPKENPLNLGGNYKKEKQNSNLILDQDNLKDN PLKEHFYAVSLEIFDSFGGFLGSKKIYTHTIDKMLTLADYLQKFQPTKKDTTLGYLDPGRNSFQHQNLIHISIIDKSKQS HVKYFPIITPTILLVSIFFSVRHCIKATWQNDRDQFYAPYNDTWQDDNEFKNNALAFMLFHTQNRITSTQGTNHFIPFSE TEVNAKERYFSHALLEFLKGGIKEESDSLFLNDKKENKPLKFSPSASRVFEAGREIYRYYHTQDFTNRPYNANASLYDIK EFFQGRNAQGKLNLPAKAKDEYYKQLYANLQDALKDLAKEIQPKVYEYGFLRE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 99525; Mature: 99525
Theoretical pI: Translated: 8.91; Mature: 8.91
Prosite motif: PS00092 N6_MTASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLLDCSNLNEEPLKSSVAKAFFENFDFSGDKIDFIITYSHKNKGKPLWVEPILWAEGKKG CEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCEEECCEEECCCCCC KSELFKSLAQLILTIGKHKFYTHFPPPYLGAFDAFSFLFVEYHKLDFIFTRSDIDFSVTP HHHHHHHHHHHHHHHCCCCCEECCCCCHHHHHHHHHHHHHHHHHEEEEEEECCCCEEECC SNHNTESFKHLLNELTPLLEKEASIFDYETQNKELKAFIKDNLLYSKRSKIPVDKNNFVH CCCCHHHHHHHHHHHHHHHHHCCHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEE VYFKWVEHVKPSISIEWQQARKQGILDADFYLADLLSESNETILESLNTILKVNHYKFNK EEEHHHHHCCCCCEEEHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC KLNNFWAFNFDETSFNDKQKAHQTFWNIYERPPKREFWDYIIERRDLLVSNDIRERKGAF CCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHCCCC FTPKIWVEKSQEYLAKILGQDYQDEYIIWDCAGGTGNLLSGLINKANLYLSTLDKSDVSI CCCHHHHHCHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHEEEEECCCCHHHH VKERIKNGAKLLENHVFQFDFLNDDFYSEKVPKSLQEILKDKEKLKKLIIYINPPYAEAG HHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCC NKAKMSGTGEHKAKVARDNLICEKYKNELGKANNEVFAQFFMRIYKELNGVILASFSKLK CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCEEEEHHHHHH NLLGSNFKKFREVFKAEFKGGFMVPADTFDNVKGQFPIGFLVWDTSSILPKENPLNLGGN HHHCCCHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCC YKKEKQNSNLILDQDNLKDNPLKEHFYAVSLEIFDSFGGFLGSKKIYTHTIDKMLTLADY CCCCCCCCCEEEECCCCCCCCHHHHHHEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH LQKFQPTKKDTTLGYLDPGRNSFQHQNLIHISIIDKSKQSHVKYFPIITPTILLVSIFFS HHHHCCCCCCCEEEEECCCCCCCCCCCEEEEEEECCCCCCCEEEECHHHHHHHHHHHHHH VRHCIKATWQNDRDQFYAPYNDTWQDDNEFKNNALAFMLFHTQNRITSTQGTNHFIPFSE HHHHHHHHCCCCCCCEECCCCCCCCCCCHHCCCEEEEEEEECCCCEECCCCCCCCCCCCC TEVNAKERYFSHALLEFLKGGIKEESDSLFLNDKKENKPLKFSPSASRVFEAGREIYRYY CCCCHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCEEECCCHHHHHHHHHHHHHHH HTQDFTNRPYNANASLYDIKEFFQGRNAQGKLNLPAKAKDEYYKQLYANLQDALKDLAKE HCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHH IQPKVYEYGFLRE HCCHHHHCCCCCC >Mature Secondary Structure MLLDCSNLNEEPLKSSVAKAFFENFDFSGDKIDFIITYSHKNKGKPLWVEPILWAEGKKG CEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCEEECCEEECCCCCC KSELFKSLAQLILTIGKHKFYTHFPPPYLGAFDAFSFLFVEYHKLDFIFTRSDIDFSVTP HHHHHHHHHHHHHHHCCCCCEECCCCCHHHHHHHHHHHHHHHHHEEEEEEECCCCEEECC SNHNTESFKHLLNELTPLLEKEASIFDYETQNKELKAFIKDNLLYSKRSKIPVDKNNFVH CCCCHHHHHHHHHHHHHHHHHCCHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEE VYFKWVEHVKPSISIEWQQARKQGILDADFYLADLLSESNETILESLNTILKVNHYKFNK EEEHHHHHCCCCCEEEHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC KLNNFWAFNFDETSFNDKQKAHQTFWNIYERPPKREFWDYIIERRDLLVSNDIRERKGAF CCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHCCCC FTPKIWVEKSQEYLAKILGQDYQDEYIIWDCAGGTGNLLSGLINKANLYLSTLDKSDVSI CCCHHHHHCHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHEEEEECCCCHHHH VKERIKNGAKLLENHVFQFDFLNDDFYSEKVPKSLQEILKDKEKLKKLIIYINPPYAEAG HHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCC NKAKMSGTGEHKAKVARDNLICEKYKNELGKANNEVFAQFFMRIYKELNGVILASFSKLK CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCEEEEHHHHHH NLLGSNFKKFREVFKAEFKGGFMVPADTFDNVKGQFPIGFLVWDTSSILPKENPLNLGGN HHHCCCHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCC YKKEKQNSNLILDQDNLKDNPLKEHFYAVSLEIFDSFGGFLGSKKIYTHTIDKMLTLADY CCCCCCCCCEEEECCCCCCCCHHHHHHEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH LQKFQPTKKDTTLGYLDPGRNSFQHQNLIHISIIDKSKQSHVKYFPIITPTILLVSIFFS HHHHCCCCCCCEEEEECCCCCCCCCCCEEEEEEECCCCCCCEEEECHHHHHHHHHHHHHH VRHCIKATWQNDRDQFYAPYNDTWQDDNEFKNNALAFMLFHTQNRITSTQGTNHFIPFSE HHHHHHHHCCCCCCCEECCCCCCCCCCCHHCCCEEEEEEEECCCCEECCCCCCCCCCCCC TEVNAKERYFSHALLEFLKGGIKEESDSLFLNDKKENKPLKFSPSASRVFEAGREIYRYY CCCCHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCEEECCCHHHHHHHHHHHHHHH HTQDFTNRPYNANASLYDIKEFFQGRNAQGKLNLPAKAKDEYYKQLYANLQDALKDLAKE HCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHH IQPKVYEYGFLRE HCCHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA