| Definition | Helicobacter pylori HPAG1 chromosome, complete genome. |
|---|---|
| Accession | NC_008086 |
| Length | 1,596,366 |
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The map label for this gene is mod [H]
Identifier: 108563739
GI number: 108563739
Start: 1361166
End: 1362269
Strand: Direct
Name: mod [H]
Synonym: HPAG1_1314
Alternate gene names: 108563739
Gene position: 1361166-1362269 (Clockwise)
Preceding gene: 108563738
Following gene: 108563740
Centisome position: 85.27
GC content: 37.68
Gene sequence:
>1104_bases ATGACAACGAACAGGCTTATTGCAAAGTGCTCATGGACGAAGTGTTTAATGGGGGGGGGTGATAACTTTGTAAATACGAT TATTTGGGAAAAAAAGTATTCTCCACAAAATGATGCGAAATGGTTCTCTGATAACCACGATTTTATTTTACTATATGCTA AGGATAAAGGAATTTGGCGGCCTAATTTATTACCACGCACAAGCGAGATGAATGCACGCTATAAAAATTTAGATAACGAT GAAAGGGGTGCGTGGAAACCTAGTGATTGTTTGGTAAAAACTTATATGGCGAGTTATGATTATCCTATCACTACACCAAG TGGAAAAGTTGTAACGCCACCAAAAGGGCGGTGTTGGATGACTTCAAAAGAAAATTTTCAAAAACTTGTAGATGATAATC GTATTTATTTTGGAAGAAATGGAGACAATGTTCCTAGTTTGAAACGCTTTTTAAGTGAAGTCAAGCAAGGCACAACACCT TTAACAATATGGAAATATACAGAAGTAGGACATAATCAAGACGCCACAAAACAATTGCTAGCTCTCTTTAATAATGTAAA GCTTTTTGACACCCCCAAACCCGAAGTCCTACTCCAACGCATTTTAGAAATTTCCACAAAAGAAAACGATCTCGTGTGCG ATTTTTTCGCTGGGAGCGGGACGACTTGCGCGGTGGCGCACAAAATGAAAAGGAAGTATATCGGTGTTGAAATGGGGGAG CATTTTGAGCGCGTGATTTTGCCTCGCCTTAAAAAGGTAATCGGCGGTTTTAAAAGCGGTGTGCTTAAAGAATTTAATAA AGGTGGGGTAATCAAAGTTTATGAATTAGAAAGCTATGAAGAGATTTTAAGAAAAATCAAGTATGAAGACAACGACAAAC CCTTAGCTTATGATGAACAATACAGCGATTTAGTGGGATGCAAAAACGAATCTTACACGCTCAATGTAGAAGCACTAGAA AAAATGGGCGTGGATATTAAAGAGACTTTGGAAAATTTACACGGCGTTGGAGTGGAGTTTTTTAATGAAAAGGTGGTGAA ATTTAAAGGGAATGATAAAGAAGTAGAGATCTTAAAAGCCTTAAAAGAAGCGCTCATTTGGTAA
Upstream 100 bases:
>100_bases GATAATTTCAAACGCTCCAGCTGGCTCGCTATGATGGAAAACCGTTTGGAGCTTGCACACGCTCTATTGAATGATAAAGG CGTGATGTTTGTGAGCATCG
Downstream 100 bases:
>100_bases GGAGAAAATCATGGCAAAGAAAAAAGATTTAACCACCGATAATGAAATTTTTGTCGCACAAAAACTCGCTGAAGACGAAC TAAACACTAACGAGATTAAC
Product: adenine-specific DNA methylase
Products: NA
Alternate protein names: M.StyLTI; StyLTI methyltransferase [H]
Number of amino acids: Translated: 367; Mature: 366
Protein sequence:
>367_residues MTTNRLIAKCSWTKCLMGGGDNFVNTIIWEKKYSPQNDAKWFSDNHDFILLYAKDKGIWRPNLLPRTSEMNARYKNLDND ERGAWKPSDCLVKTYMASYDYPITTPSGKVVTPPKGRCWMTSKENFQKLVDDNRIYFGRNGDNVPSLKRFLSEVKQGTTP LTIWKYTEVGHNQDATKQLLALFNNVKLFDTPKPEVLLQRILEISTKENDLVCDFFAGSGTTCAVAHKMKRKYIGVEMGE HFERVILPRLKKVIGGFKSGVLKEFNKGGVIKVYELESYEEILRKIKYEDNDKPLAYDEQYSDLVGCKNESYTLNVEALE KMGVDIKETLENLHGVGVEFFNEKVVKFKGNDKEVEILKALKEALIW
Sequences:
>Translated_367_residues MTTNRLIAKCSWTKCLMGGGDNFVNTIIWEKKYSPQNDAKWFSDNHDFILLYAKDKGIWRPNLLPRTSEMNARYKNLDND ERGAWKPSDCLVKTYMASYDYPITTPSGKVVTPPKGRCWMTSKENFQKLVDDNRIYFGRNGDNVPSLKRFLSEVKQGTTP LTIWKYTEVGHNQDATKQLLALFNNVKLFDTPKPEVLLQRILEISTKENDLVCDFFAGSGTTCAVAHKMKRKYIGVEMGE HFERVILPRLKKVIGGFKSGVLKEFNKGGVIKVYELESYEEILRKIKYEDNDKPLAYDEQYSDLVGCKNESYTLNVEALE KMGVDIKETLENLHGVGVEFFNEKVVKFKGNDKEVEILKALKEALIW >Mature_366_residues TTNRLIAKCSWTKCLMGGGDNFVNTIIWEKKYSPQNDAKWFSDNHDFILLYAKDKGIWRPNLLPRTSEMNARYKNLDNDE RGAWKPSDCLVKTYMASYDYPITTPSGKVVTPPKGRCWMTSKENFQKLVDDNRIYFGRNGDNVPSLKRFLSEVKQGTTPL TIWKYTEVGHNQDATKQLLALFNNVKLFDTPKPEVLLQRILEISTKENDLVCDFFAGSGTTCAVAHKMKRKYIGVEMGEH FERVILPRLKKVIGGFKSGVLKEFNKGGVIKVYELESYEEILRKIKYEDNDKPLAYDEQYSDLVGCKNESYTLNVEALEK MGVDIKETLENLHGVGVEFFNEKVVKFKGNDKEVEILKALKEALIW
Specific function: Binds the system-specific DNA recognition site 5'-CAGAG- 3'. Necessary for restriction and for methylation of A-4 [H]
COG id: COG2189
COG function: function code L; Adenine specific DNA methylase Mod
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the N(4)/N(6)-methyltransferase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002295 - InterPro: IPR002941 - InterPro: IPR002052 [H]
Pfam domain/function: PF01555 N6_N4_Mtase [H]
EC number: =2.1.1.72 [H]
Molecular weight: Translated: 42193; Mature: 42062
Theoretical pI: Translated: 8.59; Mature: 8.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTNRLIAKCSWTKCLMGGGDNFVNTIIWEKKYSPQNDAKWFSDNHDFILLYAKDKGIWR CCCCCEEEEECHHHHHCCCCCHHHHHEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCC PNLLPRTSEMNARYKNLDNDERGAWKPSDCLVKTYMASYDYPITTPSGKVVTPPKGRCWM CCCCCCCHHCCCHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCEECCCCCEECCCCCCEEE TSKENFQKLVDDNRIYFGRNGDNVPSLKRFLSEVKQGTTPLTIWKYTEVGHNQDATKQLL CCHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHH ALFNNVKLFDTPKPEVLLQRILEISTKENDLVCDFFAGSGTTCAVAHKMKRKYIGVEMGE HHHCCCEEECCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCHHHH HFERVILPRLKKVIGGFKSGVLKEFNKGGVIKVYELESYEEILRKIKYEDNDKPLAYDEQ HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHCCCCCCCCCCCCCHH YSDLVGCKNESYTLNVEALEKMGVDIKETLENLHGVGVEFFNEKVVKFKGNDKEVEILKA HHHHHCCCCCCEEEEHHHHHHHCCCHHHHHHHHHCCCHHHHCCEEEEECCCCCHHHHHHH LKEALIW HHHHHCC >Mature Secondary Structure TTNRLIAKCSWTKCLMGGGDNFVNTIIWEKKYSPQNDAKWFSDNHDFILLYAKDKGIWR CCCCEEEEECHHHHHCCCCCHHHHHEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCC PNLLPRTSEMNARYKNLDNDERGAWKPSDCLVKTYMASYDYPITTPSGKVVTPPKGRCWM CCCCCCCHHCCCHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCEECCCCCEECCCCCCEEE TSKENFQKLVDDNRIYFGRNGDNVPSLKRFLSEVKQGTTPLTIWKYTEVGHNQDATKQLL CCHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHH ALFNNVKLFDTPKPEVLLQRILEISTKENDLVCDFFAGSGTTCAVAHKMKRKYIGVEMGE HHHCCCEEECCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCHHHH HFERVILPRLKKVIGGFKSGVLKEFNKGGVIKVYELESYEEILRKIKYEDNDKPLAYDEQ HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHCCCCCCCCCCCCCHH YSDLVGCKNESYTLNVEALEKMGVDIKETLENLHGVGVEFFNEKVVKFKGNDKEVEILKA HHHHHCCCCCCEEEEHHHHHHHCCCHHHHHHHHHCCCHHHHCCEEEEECCCCCHHHHHHH LKEALIW HHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8387444; 11677609 [H]