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The map label for this gene is 108563444

Identifier: 108563444

GI number: 108563444

Start: 1074565

End: 1076667

Strand: Reverse

Name: 108563444

Synonym: HPAG1_1019

Alternate gene names: NA

Gene position: 1076667-1074565 (Counterclockwise)

Preceding gene: 108563445

Following gene: 108563441

Centisome position: 67.44

GC content: 38.99

Gene sequence:

>2103_bases
ATGCTAAGATTCGTTAGTAAAACGATTTGCTTGTCTTTAATCGGCTTGTTCAACCCTTTAGAAGCCTTTCAAAAACACCA
AAAAGACGGCTTTTTTATAGAAGCCGGGTTTGAAACCGGGTTATTAGAAGGCGTGCAAACTAAAGAAGAAGTCATAACTA
CCCAAAAAATCTATGAAAACCCTCTAACCCACCCACAAACTAAAGAACAGCCTAAAGAACAAAACAAAAGCGATACAGCC
ACCCCACAAAGCGCTTACGGAAAATACTACATACCCCAAAGCACCATTTTAAAAAACGCAACGGCTTTATTCACCACGGA
CAATATAGAAAATGGCTTAACTTTTTATTCTCAAAACCCTGTGTATGCGAATATGGTTAATGGGAGCGTAACCATACAAA
ACTTTCTGCCTTATAATTTAAACAATGTTGAACTGAGTTTTAAAGACGCTCAAGGCAAGGTAGTCAATTTAGGCGTGATA
GAGACTATCCCCAAAGATTCTCAAATTATTTTGCCTGCAAGCTTGTTTAATGATTCAGAATTTGAACAAGCTGATAGCTT
TAATTACCAACAACTTCAAGCCACTGCCACACAATTTTCTGACGCTAACACGCAAAGTTTGTTTGAAAAGCTCAGCCAAA
TCACAACCAATGTAACGATGAGTTATGAAAACGCCGATACCAACAATTTTAAAGGTAATTGCAATGATTGTGTGTCAGAT
TTCACCCCACAAACCGCAGAAGAATTGACCAATTTAATGCTAGATATGATTGCGGTGTTTGACTCTAAATCGTGGGAAGA
AGCCGTTTTAAACGCTCCTTTCCAATTTTCTAACAGCCCATCAGAATGCGGCTCTGATTACCCTAAATGCGTGAACCCTT
TCAATAACGGGCGTGTCGCTCCCATCTATGAACACTATGTGCTAACCCCACAATCCGTTATAGATGCGTTTAGAAGAGCG
ATCAATCTTGAAGTGAATATCCTAAAATCAGGGTTTGTAGGGCTAGGGTATGAACTTGATGATAATGATGGTAATCTGGG
GATAGAAGCTTCTGCCTTAAATCCCGAAAAATTGTTTGGTAAAACTTTGAACAAAGTTGATATTGTGGAATTAAGAGACA
TTATCCATGAATTTAGCCACACTAAAGGCTATACGCATAATGGGAACATGACTTATCAAAGGGTACGCTTGTGTCAAGAA
AACGGCGGAGCCATACAAGAATGTGAGGGTGGAAAAGAAGAATTAGTCAATGGGAAAGAAGAACTAAAATTTACAAATGG
GAAAGAAGTGAAAGATCAGGATGGTTACACCTATAATGTTTGCTCTCGTTTTGGCGGCAAAAATCAGCCCGCTTTCCCTA
GCAATTACCCCAATTCCATCTACACCAATTGTGCTCAAGTCCCTGCTGGGCTTATAGGCGTTACCACCGCTGTTTGGCAA
CAGCTCATCAATCAAAACGCTCTGCCCATTAATTTCGCTAACCTAAATAGCCAGACCAGCCATTTAAACGCTGGGTTGAA
TGCGCAAAATTTTGCAACCTCTATGGTCAGTGCGATCGCACAAAATTTTTCCACCACTTCCACCACCACTTATCACTCTT
CAAGTAAAAATTTTAGAAGCCCTATTTTAGGGGTTAATGTTAAAATAGGCTACCAACATTATTTCAATGACTACATAGGG
TTAGCCTATTACGGCATTATCAAATACAACTACGCCAAAACTAACGATGAAAAAATCCAGCAATTAAGCTATGGTGGGGG
AATGGATGTGTTATTTGATTTCATCACCACTTATGCTAATAAAAAGCAAGGCAATCCAACTAAAAAAGTTTTTGCTTCCT
CTTTTGGGGTGTTTGGGGGGTTAAGGGGCTTATACAATAGCTACTATGTTTTCAATCAAGTCAAAGGAAGCGGTAATTTG
GATATAGTTACTGGGTTTAATTACCGCTACAAGCATTCTAAATATTCCATAGGCATTAGCGTTCCTTTAATTCAAAGCGG
TATTAAAATCGCTTCTAATAATGGCATCTATGCGAACTCTGTTGTTTTGAATGAGGGGGGCAGCCATTTTAAAGTGTTTT
TTAACTATGGGTGGATTTTCTAG

Upstream 100 bases:

>100_bases
ATACCGCAATTTCTCAAAAATGTTTTATAATACGAAAATTCAGTTTGATTGAGTTACACACTCTTTGAGAACAAAACGCT
AAACCATTTAGGAAATTACC

Downstream 100 bases:

>100_bases
GATCTAAAATCCCCAATAATCCCCTAAACTTGCGCGATACTCGCTACAAACACGCATGCACTCTCAGACTTTAGCACCAT
ATCTAACGGGATGCGATAAA

Product: outer membrane protein

Products: NA

Alternate protein names: Hom Family Outer Membrane Protein; Outer Membrane Protein HomD; Outer Membrane Protein HomA; Outer Membrane Protein HomB

Number of amino acids: Translated: 700; Mature: 700

Protein sequence:

>700_residues
MLRFVSKTICLSLIGLFNPLEAFQKHQKDGFFIEAGFETGLLEGVQTKEEVITTQKIYENPLTHPQTKEQPKEQNKSDTA
TPQSAYGKYYIPQSTILKNATALFTTDNIENGLTFYSQNPVYANMVNGSVTIQNFLPYNLNNVELSFKDAQGKVVNLGVI
ETIPKDSQIILPASLFNDSEFEQADSFNYQQLQATATQFSDANTQSLFEKLSQITTNVTMSYENADTNNFKGNCNDCVSD
FTPQTAEELTNLMLDMIAVFDSKSWEEAVLNAPFQFSNSPSECGSDYPKCVNPFNNGRVAPIYEHYVLTPQSVIDAFRRA
INLEVNILKSGFVGLGYELDDNDGNLGIEASALNPEKLFGKTLNKVDIVELRDIIHEFSHTKGYTHNGNMTYQRVRLCQE
NGGAIQECEGGKEELVNGKEELKFTNGKEVKDQDGYTYNVCSRFGGKNQPAFPSNYPNSIYTNCAQVPAGLIGVTTAVWQ
QLINQNALPINFANLNSQTSHLNAGLNAQNFATSMVSAIAQNFSTTSTTTYHSSSKNFRSPILGVNVKIGYQHYFNDYIG
LAYYGIIKYNYAKTNDEKIQQLSYGGGMDVLFDFITTYANKKQGNPTKKVFASSFGVFGGLRGLYNSYYVFNQVKGSGNL
DIVTGFNYRYKHSKYSIGISVPLIQSGIKIASNNGIYANSVVLNEGGSHFKVFFNYGWIF

Sequences:

>Translated_700_residues
MLRFVSKTICLSLIGLFNPLEAFQKHQKDGFFIEAGFETGLLEGVQTKEEVITTQKIYENPLTHPQTKEQPKEQNKSDTA
TPQSAYGKYYIPQSTILKNATALFTTDNIENGLTFYSQNPVYANMVNGSVTIQNFLPYNLNNVELSFKDAQGKVVNLGVI
ETIPKDSQIILPASLFNDSEFEQADSFNYQQLQATATQFSDANTQSLFEKLSQITTNVTMSYENADTNNFKGNCNDCVSD
FTPQTAEELTNLMLDMIAVFDSKSWEEAVLNAPFQFSNSPSECGSDYPKCVNPFNNGRVAPIYEHYVLTPQSVIDAFRRA
INLEVNILKSGFVGLGYELDDNDGNLGIEASALNPEKLFGKTLNKVDIVELRDIIHEFSHTKGYTHNGNMTYQRVRLCQE
NGGAIQECEGGKEELVNGKEELKFTNGKEVKDQDGYTYNVCSRFGGKNQPAFPSNYPNSIYTNCAQVPAGLIGVTTAVWQ
QLINQNALPINFANLNSQTSHLNAGLNAQNFATSMVSAIAQNFSTTSTTTYHSSSKNFRSPILGVNVKIGYQHYFNDYIG
LAYYGIIKYNYAKTNDEKIQQLSYGGGMDVLFDFITTYANKKQGNPTKKVFASSFGVFGGLRGLYNSYYVFNQVKGSGNL
DIVTGFNYRYKHSKYSIGISVPLIQSGIKIASNNGIYANSVVLNEGGSHFKVFFNYGWIF
>Mature_700_residues
MLRFVSKTICLSLIGLFNPLEAFQKHQKDGFFIEAGFETGLLEGVQTKEEVITTQKIYENPLTHPQTKEQPKEQNKSDTA
TPQSAYGKYYIPQSTILKNATALFTTDNIENGLTFYSQNPVYANMVNGSVTIQNFLPYNLNNVELSFKDAQGKVVNLGVI
ETIPKDSQIILPASLFNDSEFEQADSFNYQQLQATATQFSDANTQSLFEKLSQITTNVTMSYENADTNNFKGNCNDCVSD
FTPQTAEELTNLMLDMIAVFDSKSWEEAVLNAPFQFSNSPSECGSDYPKCVNPFNNGRVAPIYEHYVLTPQSVIDAFRRA
INLEVNILKSGFVGLGYELDDNDGNLGIEASALNPEKLFGKTLNKVDIVELRDIIHEFSHTKGYTHNGNMTYQRVRLCQE
NGGAIQECEGGKEELVNGKEELKFTNGKEVKDQDGYTYNVCSRFGGKNQPAFPSNYPNSIYTNCAQVPAGLIGVTTAVWQ
QLINQNALPINFANLNSQTSHLNAGLNAQNFATSMVSAIAQNFSTTSTTTYHSSSKNFRSPILGVNVKIGYQHYFNDYIG
LAYYGIIKYNYAKTNDEKIQQLSYGGGMDVLFDFITTYANKKQGNPTKKVFASSFGVFGGLRGLYNSYYVFNQVKGSGNL
DIVTGFNYRYKHSKYSIGISVPLIQSGIKIASNNGIYANSVVLNEGGSHFKVFFNYGWIF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 77861; Mature: 77861

Theoretical pI: Translated: 5.52; Mature: 5.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRFVSKTICLSLIGLFNPLEAFQKHQKDGFFIEAGFETGLLEGVQTKEEVITTQKIYEN
CCHHHHHHHHHHHHHHCCHHHHHHHHCCCCEEEEECCCCHHHHCCCHHHHHHHHHHHHHC
PLTHPQTKEQPKEQNKSDTATPQSAYGKYYIPQSTILKNATALFTTDNIENGLTFYSQNP
CCCCCCCCCCHHHCCCCCCCCCHHHCCCEECCHHHHHCCCEEEEEECCCCCCCEEEECCC
VYANMVNGSVTIQNFLPYNLNNVELSFKDAQGKVVNLGVIETIPKDSQIILPASLFNDSE
EEEEEECCEEEEEECCCCCCCCEEEEEECCCCCEEEEEEEEECCCCCEEEEEHHHCCCCH
FEQADSFNYQQLQATATQFSDANTQSLFEKLSQITTNVTMSYENADTNNFKGNCNDCVSD
HHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCEEEEECCCCCCCCCCCHHHHHHC
FTPQTAEELTNLMLDMIAVFDSKSWEEAVLNAPFQFSNSPSECGSDYPKCVNPFNNGRVA
CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCHHHHCCCCHHHCCCCCCCEEE
PIYEHYVLTPQSVIDAFRRAINLEVNILKSGFVGLGYELDDNDGNLGIEASALNPEKLFG
EEHHCEEECHHHHHHHHHHHHCCEEEEEECCCEEECEEECCCCCCEEEEECCCCHHHHHH
KTLNKVDIVELRDIIHEFSHTKGYTHNGNMTYQRVRLCQENGGAIQECEGGKEELVNGKE
HHCCCCHHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHCCCCCCCCCCCHHHHHCCHH
ELKFTNGKEVKDQDGYTYNVCSRFGGKNQPAFPSNYPNSIYTNCAQVPAGLIGVTTAVWQ
HEEECCCCCCCCCCCCEEEHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHH
QLINQNALPINFANLNSQTSHLNAGLNAQNFATSMVSAIAQNFSTTSTTTYHSSSKNFRS
HHHCCCCCEEEEECCCCCCHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC
PILGVNVKIGYQHYFNDYIGLAYYGIIKYNYAKTNDEKIQQLSYGGGMDVLFDFITTYAN
CEEEEEEEECHHHHHHHHHHHHEEEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHC
KKQGNPTKKVFASSFGVFGGLRGLYNSYYVFNQVKGSGNLDIVTGFNYRYKHSKYSIGIS
CCCCCHHHHHHHHHHHHHHHHHHHHHCEEEEEEECCCCCEEEEECCCEEEECCEEEEEEE
VPLIQSGIKIASNNGIYANSVVLNEGGSHFKVFFNYGWIF
CHHHHCCCEEECCCCEEEEEEEEECCCCEEEEEEECCCCC
>Mature Secondary Structure
MLRFVSKTICLSLIGLFNPLEAFQKHQKDGFFIEAGFETGLLEGVQTKEEVITTQKIYEN
CCHHHHHHHHHHHHHHCCHHHHHHHHCCCCEEEEECCCCHHHHCCCHHHHHHHHHHHHHC
PLTHPQTKEQPKEQNKSDTATPQSAYGKYYIPQSTILKNATALFTTDNIENGLTFYSQNP
CCCCCCCCCCHHHCCCCCCCCCHHHCCCEECCHHHHHCCCEEEEEECCCCCCCEEEECCC
VYANMVNGSVTIQNFLPYNLNNVELSFKDAQGKVVNLGVIETIPKDSQIILPASLFNDSE
EEEEEECCEEEEEECCCCCCCCEEEEEECCCCCEEEEEEEEECCCCCEEEEEHHHCCCCH
FEQADSFNYQQLQATATQFSDANTQSLFEKLSQITTNVTMSYENADTNNFKGNCNDCVSD
HHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCEEEEECCCCCCCCCCCHHHHHHC
FTPQTAEELTNLMLDMIAVFDSKSWEEAVLNAPFQFSNSPSECGSDYPKCVNPFNNGRVA
CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCHHHHCCCCHHHCCCCCCCEEE
PIYEHYVLTPQSVIDAFRRAINLEVNILKSGFVGLGYELDDNDGNLGIEASALNPEKLFG
EEHHCEEECHHHHHHHHHHHHCCEEEEEECCCEEECEEECCCCCCEEEEECCCCHHHHHH
KTLNKVDIVELRDIIHEFSHTKGYTHNGNMTYQRVRLCQENGGAIQECEGGKEELVNGKE
HHCCCCHHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHCCCCCCCCCCCHHHHHCCHH
ELKFTNGKEVKDQDGYTYNVCSRFGGKNQPAFPSNYPNSIYTNCAQVPAGLIGVTTAVWQ
HEEECCCCCCCCCCCCEEEHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHH
QLINQNALPINFANLNSQTSHLNAGLNAQNFATSMVSAIAQNFSTTSTTTYHSSSKNFRS
HHHCCCCCEEEEECCCCCCHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC
PILGVNVKIGYQHYFNDYIGLAYYGIIKYNYAKTNDEKIQQLSYGGGMDVLFDFITTYAN
CEEEEEEEECHHHHHHHHHHHHEEEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHC
KKQGNPTKKVFASSFGVFGGLRGLYNSYYVFNQVKGSGNLDIVTGFNYRYKHSKYSIGIS
CCCCCHHHHHHHHHHHHHHHHHHHHHCEEEEEEECCCCCEEEEECCCEEEECCEEEEEEE
VPLIQSGIKIASNNGIYANSVVLNEGGSHFKVFFNYGWIF
CHHHHCCCEEECCCCEEEEEEEEECCCCEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA