| Definition | Helicobacter pylori HPAG1 chromosome, complete genome. |
|---|---|
| Accession | NC_008086 |
| Length | 1,596,366 |
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The map label for this gene is 108563130
Identifier: 108563130
GI number: 108563130
Start: 740958
End: 741419
Strand: Direct
Name: 108563130
Synonym: HPAG1_0705
Alternate gene names: NA
Gene position: 740958-741419 (Clockwise)
Preceding gene: 108563129
Following gene: 108563131
Centisome position: 46.42
GC content: 39.61
Gene sequence:
>462_bases ATGAAAAAAGCGTTGAAAATACTTTCTGTTGGTGCGTTGTTATTTGTGGCTTTAAACGCCAAAGATTTCAGCAAAACAAG CGATGAAGATTTAGCTAAAATGGCTGGCATTGTCGCTCCGCAAGATATTGTGGATTACACAAAAGAGTTGAAAATGCGCA TGAAAAAAATGCCTGAAGATAAGAGAAAGGCGTTCCATAAGCAGTTGCATGAATACGCGGTTAAAAACACAGACAGCATG ACCGTAGCGGATTTTGAAGCCCGCCAAAAAGCCATTAAAGAAGCGCTTAAAAAAGGCAACATGGAAGACATGGATGATGA TTTTGGGTTAAGATCATGCAAGCATGGGAAAAAGCATAAACACCACAAACACGGTGGTCATGATAAACATGGCAAAGGGC ATGACAAAGAACAAGGCAAAAAAGACCACGATCACAATGATCATGGCGAAAATGAAAAATAA
Upstream 100 bases:
>100_bases TTGCAGCGGCGATACGAGAAAAGTTTGGTGTAGGGCTGTTAAGAAAAAAGACGAACATTGCTCTCCTAAGTGAGATAAAA TTTAATTTAAAAGGAAAAAT
Downstream 100 bases:
>100_bases AGCTTAAACCACACCCCTTTTTCTATCAAAGCTTCAAACCCTTTAAGCAGAAATCCTAAACGCTTTGAGCGTTTGGGATA AATGCGTTCTGTTAAGCGTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 153; Mature: 153
Protein sequence:
>153_residues MKKALKILSVGALLFVALNAKDFSKTSDEDLAKMAGIVAPQDIVDYTKELKMRMKKMPEDKRKAFHKQLHEYAVKNTDSM TVADFEARQKAIKEALKKGNMEDMDDDFGLRSCKHGKKHKHHKHGGHDKHGKGHDKEQGKKDHDHNDHGENEK
Sequences:
>Translated_153_residues MKKALKILSVGALLFVALNAKDFSKTSDEDLAKMAGIVAPQDIVDYTKELKMRMKKMPEDKRKAFHKQLHEYAVKNTDSM TVADFEARQKAIKEALKKGNMEDMDDDFGLRSCKHGKKHKHHKHGGHDKHGKGHDKEQGKKDHDHNDHGENEK >Mature_153_residues MKKALKILSVGALLFVALNAKDFSKTSDEDLAKMAGIVAPQDIVDYTKELKMRMKKMPEDKRKAFHKQLHEYAVKNTDSM TVADFEARQKAIKEALKKGNMEDMDDDFGLRSCKHGKKHKHHKHGGHDKHGKGHDKEQGKKDHDHNDHGENEK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17453; Mature: 17453
Theoretical pI: Translated: 9.91; Mature: 9.91
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 5.2 %Met (Translated Protein) 5.9 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 5.2 %Met (Mature Protein) 5.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKALKILSVGALLFVALNAKDFSKTSDEDLAKMAGIVAPQDIVDYTKELKMRMKKMPED CCHHHHHHHHHHHHHHHHCCHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHH KRKAFHKQLHEYAVKNTDSMTVADFEARQKAIKEALKKGNMEDMDDDFGLRSCKHGKKHK HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCHHHC HHKHGGHDKHGKGHDKEQGKKDHDHNDHGENEK CCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCC >Mature Secondary Structure MKKALKILSVGALLFVALNAKDFSKTSDEDLAKMAGIVAPQDIVDYTKELKMRMKKMPED CCHHHHHHHHHHHHHHHHCCHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHH KRKAFHKQLHEYAVKNTDSMTVADFEARQKAIKEALKKGNMEDMDDDFGLRSCKHGKKHK HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCHHHC HHKHGGHDKHGKGHDKEQGKKDHDHNDHGENEK CCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA