| Definition | Helicobacter pylori HPAG1 chromosome, complete genome. |
|---|---|
| Accession | NC_008086 |
| Length | 1,596,366 |
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The map label for this gene is 108562982
Identifier: 108562982
GI number: 108562982
Start: 574038
End: 576068
Strand: Reverse
Name: 108562982
Synonym: HPAG1_0557
Alternate gene names: NA
Gene position: 576068-574038 (Counterclockwise)
Preceding gene: 108562983
Following gene: 108562981
Centisome position: 36.09
GC content: 36.53
Gene sequence:
>2031_bases ATGAAATCCCTATCCCATGCCCTTTTTTCGCTCTTTTTAAAAGGTTTTTATTTCACCTTTTTCATGAGCTTGTTGTTTGT GTTTAATCGTATCGGCTTTATCCTTTATACTGGCTATTATAAACACGCTTTAAAAAACCCTATTTTTGATGAAATCATCA AAACCCTATTCAATGGAGCCAGATACGATAATCGTGTGGTCTCAAGCTTAGCGATTCTTTTTATCCTCATCGGGTTATTA GGGTTATTGGCCCCCAAACACCAAACCAAAATGCTTAATATTATGGCGTGTTTTTCTATCGCTATTATCCTGTTTTTAAA CATTGCAAACATTGTTTATTATGGCATTTATGGGAATGTGTTTGATGAAAATTTATTGGAATTTCTGCATGAAGACACGC TCACGATTTTAAAAATGAGTGGGGAATACCCTATTTTTTCTAGTTTTTCACTCTTTATAATCCTTAGCGTTTTAACCTCT TTTATCTATTTCAAACTCCAAAACGCCCTTTTTAAGCCCAAAAATATTCATCAAACCACCAAACCCCTTAAAACTTTCAT TTTATTTGCGCTTTTTTCCCTCACACAAATGTTTTACATTAACGCGCAATTGAGCTTTGTTGGTGCGTCTTTAGATCTCA TCATAGAGCCAGCCAAAGATCCTTTTTTAATGAAAATCACCCCCGGTGCGTTTCGCAACCTTTATCTTTTAACACGCAAT TACAGACAAAGCCATAACCTTAAATTCAGCGATTTTGCTAAAGAAACGCCTTTAGAAGTGGCGAAAAATTATTTCCATCT TAAAGAAAACCCTTCAAACAACCTCTATGAGTTGCTAACTCAGACAAGCCATAACAATTCCAATCAAACCATTCAACATG TTTTTTATATCGTTTCAGAGTCTCTGAGTTCATGGCATTTTGATAAAAAATTTGATTCCATAGGGCTAACGAGCGCTTTA CAAGACTTGGTTAAAAAAGAACATGCTCACATGCTTTCTGCTTTTATTGAAGGCGCCCCACGGACCGTTAAGAGCCTGGA TGTCCAAATCACAGGCTTACCCTATATCAATGATAATAACTTAGTCAATTCAGGAGTGATTCTCCCTAGCTTTCCTATGG CGATTGGCAATATCACAAAAACTCTAGGTTATAAAAACAACTTTTATTATGGAGGCAGTGGGATTTGGAACAAACTAACG AGTTTCACCAAAAAACAAGGTTTTCACGCCCTCTATTTCAATAACCATCTCTTAGAATTTGCCAAAAACAAGCCCTACCC TAAACCCATAGAGAGCAACTGGGGAGTGCATGATAATATTTTATTTGACTATATTTTAGAAAACACCAACCCCCATGAAA AAACTTTCAGCATGGTCATGACTTTAAGCAACCACGCGATCAAAAACGTGAATCTCAAAGCCTTTGGCGTGCCTTTAGAA AAAATCCAAAAATTTGTGGAAAAAACCCCCAAATCAGAAAATCTACCGGACGCTAATTCTTTAGGGCATATTTACTGGTA TGACAAAGTGGTGGTTGATTTCATCAAAAAAGCCAGCCAAAAATTCCCTAACTCGCTTTTTATCATCACAGGGGATCACT TTGACAGGAGCTATGAATACGCTAAAAACGATTTGTATATCATTAAATCCGTGCCGCTTATTTTGTTCGCCCCTACTTTA AAGCCTGAAACAATCAGTCAAGTCGGATCGCATTTAGACATCGCCCCTACGATTGTTGAATTAGTCGCTCCTGAAGGTTT TCAATTTGTGAGTTTCGGGAAGCCTTTATTTTCTAACAACACAACAAACCCTCCAAGCCACCCCAATTACGTGCTAGGTT ATGAAGCGATCGCTACCAAAGATTATTTTTATAACCCAAGTTTAGGGTTAAGATATTTGAACAAAAATTACAAAGAGCAA AAGAATAAACAAAACGACAAAATAGAAGCTTCTAAATTTTACCAGCAATTAGAATCCTTAAAAGCCCTTAGTTATTACTT GCTCTATCATGGAGCTAATCTTAAAGATTGA
Upstream 100 bases:
>100_bases CTAATTTTCAAATCTTGGATTCTTTATTGGATTTCCCCTTGCTTCTTTTTGTCTTTTTTAAGACTTTATCTCTTGTTAAA AAAAGGTTGTATTAACGCTT
Downstream 100 bases:
>100_bases CAAACTGGGTTTTTATTCCCTTAAACGCATGATTTTTGCTACAATAATAGGATTTTAATTATATAAAGGATAAATGGGCA TGCCAAATAGGGGCGTTGTT
Product: hypothetical protein
Products: NA
Alternate protein names: Phosphoglycerol Transferase; Alkaline Phosphatase; Phosphoglycerol Transferase And Related Proteins; Arylsulfatase; Alkaline Phosphatase Superfamily Protein
Number of amino acids: Translated: 676; Mature: 676
Protein sequence:
>676_residues MKSLSHALFSLFLKGFYFTFFMSLLFVFNRIGFILYTGYYKHALKNPIFDEIIKTLFNGARYDNRVVSSLAILFILIGLL GLLAPKHQTKMLNIMACFSIAIILFLNIANIVYYGIYGNVFDENLLEFLHEDTLTILKMSGEYPIFSSFSLFIILSVLTS FIYFKLQNALFKPKNIHQTTKPLKTFILFALFSLTQMFYINAQLSFVGASLDLIIEPAKDPFLMKITPGAFRNLYLLTRN YRQSHNLKFSDFAKETPLEVAKNYFHLKENPSNNLYELLTQTSHNNSNQTIQHVFYIVSESLSSWHFDKKFDSIGLTSAL QDLVKKEHAHMLSAFIEGAPRTVKSLDVQITGLPYINDNNLVNSGVILPSFPMAIGNITKTLGYKNNFYYGGSGIWNKLT SFTKKQGFHALYFNNHLLEFAKNKPYPKPIESNWGVHDNILFDYILENTNPHEKTFSMVMTLSNHAIKNVNLKAFGVPLE KIQKFVEKTPKSENLPDANSLGHIYWYDKVVVDFIKKASQKFPNSLFIITGDHFDRSYEYAKNDLYIIKSVPLILFAPTL KPETISQVGSHLDIAPTIVELVAPEGFQFVSFGKPLFSNNTTNPPSHPNYVLGYEAIATKDYFYNPSLGLRYLNKNYKEQ KNKQNDKIEASKFYQQLESLKALSYYLLYHGANLKD
Sequences:
>Translated_676_residues MKSLSHALFSLFLKGFYFTFFMSLLFVFNRIGFILYTGYYKHALKNPIFDEIIKTLFNGARYDNRVVSSLAILFILIGLL GLLAPKHQTKMLNIMACFSIAIILFLNIANIVYYGIYGNVFDENLLEFLHEDTLTILKMSGEYPIFSSFSLFIILSVLTS FIYFKLQNALFKPKNIHQTTKPLKTFILFALFSLTQMFYINAQLSFVGASLDLIIEPAKDPFLMKITPGAFRNLYLLTRN YRQSHNLKFSDFAKETPLEVAKNYFHLKENPSNNLYELLTQTSHNNSNQTIQHVFYIVSESLSSWHFDKKFDSIGLTSAL QDLVKKEHAHMLSAFIEGAPRTVKSLDVQITGLPYINDNNLVNSGVILPSFPMAIGNITKTLGYKNNFYYGGSGIWNKLT SFTKKQGFHALYFNNHLLEFAKNKPYPKPIESNWGVHDNILFDYILENTNPHEKTFSMVMTLSNHAIKNVNLKAFGVPLE KIQKFVEKTPKSENLPDANSLGHIYWYDKVVVDFIKKASQKFPNSLFIITGDHFDRSYEYAKNDLYIIKSVPLILFAPTL KPETISQVGSHLDIAPTIVELVAPEGFQFVSFGKPLFSNNTTNPPSHPNYVLGYEAIATKDYFYNPSLGLRYLNKNYKEQ KNKQNDKIEASKFYQQLESLKALSYYLLYHGANLKD >Mature_676_residues MKSLSHALFSLFLKGFYFTFFMSLLFVFNRIGFILYTGYYKHALKNPIFDEIIKTLFNGARYDNRVVSSLAILFILIGLL GLLAPKHQTKMLNIMACFSIAIILFLNIANIVYYGIYGNVFDENLLEFLHEDTLTILKMSGEYPIFSSFSLFIILSVLTS FIYFKLQNALFKPKNIHQTTKPLKTFILFALFSLTQMFYINAQLSFVGASLDLIIEPAKDPFLMKITPGAFRNLYLLTRN YRQSHNLKFSDFAKETPLEVAKNYFHLKENPSNNLYELLTQTSHNNSNQTIQHVFYIVSESLSSWHFDKKFDSIGLTSAL QDLVKKEHAHMLSAFIEGAPRTVKSLDVQITGLPYINDNNLVNSGVILPSFPMAIGNITKTLGYKNNFYYGGSGIWNKLT SFTKKQGFHALYFNNHLLEFAKNKPYPKPIESNWGVHDNILFDYILENTNPHEKTFSMVMTLSNHAIKNVNLKAFGVPLE KIQKFVEKTPKSENLPDANSLGHIYWYDKVVVDFIKKASQKFPNSLFIITGDHFDRSYEYAKNDLYIIKSVPLILFAPTL KPETISQVGSHLDIAPTIVELVAPEGFQFVSFGKPLFSNNTTNPPSHPNYVLGYEAIATKDYFYNPSLGLRYLNKNYKEQ KNKQNDKIEASKFYQQLESLKALSYYLLYHGANLKD
Specific function: Unknown
COG id: COG1368
COG function: function code M; Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 77507; Mature: 77507
Theoretical pI: Translated: 9.54; Mature: 9.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKSLSHALFSLFLKGFYFTFFMSLLFVFNRIGFILYTGYYKHALKNPIFDEIIKTLFNGA CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHCCCHHHHHHHHHHCCC RYDNRVVSSLAILFILIGLLGLLAPKHQTKMLNIMACFSIAIILFLNIANIVYYGIYGNV CCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCH FDENLLEFLHEDTLTILKMSGEYPIFSSFSLFIILSVLTSFIYFKLQNALFKPKNIHQTT HHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH KPLKTFILFALFSLTQMFYINAQLSFVGASLDLIIEPAKDPFLMKITPGAFRNLYLLTRN HHHHHHHHHHHHHHHHHHHEEEEHEEECCCEEEEEECCCCCEEEEECCCHHHHEEEEECC YRQSHNLKFSDFAKETPLEVAKNYFHLKENPSNNLYELLTQTSHNNSNQTIQHVFYIVSE HHHHCCCCHHHHHHCCCHHHHHHHEEECCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHH SLSSWHFDKKFDSIGLTSALQDLVKKEHAHMLSAFIEGAPRTVKSLDVQITGLPYINDNN HHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHEEEEEEECCEECCCC LVNSGVILPSFPMAIGNITKTLGYKNNFYYGGSGIWNKLTSFTKKQGFHALYFNNHLLEF CCCCCEECCCCCHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHCCCEEEEECHHHHHH AKNKPYPKPIESNWGVHDNILFDYILENTNPHEKTFSMVMTLSNHAIKNVNLKAFGVPLE HCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCHH KIQKFVEKTPKSENLPDANSLGHIYWYDKVVVDFIKKASQKFPNSLFIITGDHFDRSYEY HHHHHHHHCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHH AKNDLYIIKSVPLILFAPTLKPETISQVGSHLDIAPTIVELVAPEGFQFVSFGKPLFSNN CCCCEEEEECCCEEEEECCCCHHHHHHHCCCCCHHHHHHHHHCCCCCEEHCCCCCHHCCC TTNPPSHPNYVLGYEAIATKDYFYNPSLGLRYLNKNYKEQKNKQNDKIEASKFYQQLESL CCCCCCCCCEEEEHHHHCCCCCEECCCCHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHH KALSYYLLYHGANLKD HHHHHHHHHCCCCCCC >Mature Secondary Structure MKSLSHALFSLFLKGFYFTFFMSLLFVFNRIGFILYTGYYKHALKNPIFDEIIKTLFNGA CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHCCCHHHHHHHHHHCCC RYDNRVVSSLAILFILIGLLGLLAPKHQTKMLNIMACFSIAIILFLNIANIVYYGIYGNV CCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCH FDENLLEFLHEDTLTILKMSGEYPIFSSFSLFIILSVLTSFIYFKLQNALFKPKNIHQTT HHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH KPLKTFILFALFSLTQMFYINAQLSFVGASLDLIIEPAKDPFLMKITPGAFRNLYLLTRN HHHHHHHHHHHHHHHHHHHEEEEHEEECCCEEEEEECCCCCEEEEECCCHHHHEEEEECC YRQSHNLKFSDFAKETPLEVAKNYFHLKENPSNNLYELLTQTSHNNSNQTIQHVFYIVSE HHHHCCCCHHHHHHCCCHHHHHHHEEECCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHH SLSSWHFDKKFDSIGLTSALQDLVKKEHAHMLSAFIEGAPRTVKSLDVQITGLPYINDNN HHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHEEEEEEECCEECCCC LVNSGVILPSFPMAIGNITKTLGYKNNFYYGGSGIWNKLTSFTKKQGFHALYFNNHLLEF CCCCCEECCCCCHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHCCCEEEEECHHHHHH AKNKPYPKPIESNWGVHDNILFDYILENTNPHEKTFSMVMTLSNHAIKNVNLKAFGVPLE HCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCHH KIQKFVEKTPKSENLPDANSLGHIYWYDKVVVDFIKKASQKFPNSLFIITGDHFDRSYEY HHHHHHHHCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHH AKNDLYIIKSVPLILFAPTLKPETISQVGSHLDIAPTIVELVAPEGFQFVSFGKPLFSNN CCCCEEEEECCCEEEEECCCCHHHHHHHCCCCCHHHHHHHHHCCCCCEEHCCCCCHHCCC TTNPPSHPNYVLGYEAIATKDYFYNPSLGLRYLNKNYKEQKNKQNDKIEASKFYQQLESL CCCCCCCCCEEEEHHHHCCCCCEECCCCHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHH KALSYYLLYHGANLKD HHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA