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The map label for this gene is ygiC [H]

Identifier: 108562661

GI number: 108562661

Start: 240115

End: 241287

Strand: Direct

Name: ygiC [H]

Synonym: HPAG1_0236

Alternate gene names: 108562661

Gene position: 240115-241287 (Clockwise)

Preceding gene: 108562660

Following gene: 108562662

Centisome position: 15.04

GC content: 39.98

Gene sequence:

>1173_bases
ATGCAAGTGATTCCTTTAAAACCTTTAGACAATAAGACTTTAGAAGAAATCGGCCTAGATTGGCACACTAATGATGACAT
GTCATCTTATATCGCTGATGAAATGGTGGTTGTTTCTCAAAAAGAAGCGGACGCTTATTATGACGCTTGTAATGAGCTTT
ATGACATGTTTGTAGAGACGGCTGAAGAGGCCATTCAAAACGATCGCTTTTTTGAATTGGATATTCCTAACGCGCTCATT
CCTATGATCAAACAGAGTTTTGAAGAAGAAGTGCATTGGCATATTTATGGGCGTTTTGATTTAGCCGGGGGGCTTGATGG
CAAGCCGATTAAATTATTAGAATTTAACGCTGATACCCCCACCATGCTCTATGAAACGGCGGTGATTCAGTGGGCGTTAC
TCAAAGCGAATGGCTATGATGAAAACAAGCAATTCAATAACCTTTATGAAGCGCTTGGTGAGAATTTTAAACGCATGGTA
ACTTTAGGCGAAGACACGAGCCGTTTTGAGGAAATGTATGAGGGGTGGAAAATCCTTTTTTCAAGCGTTAGGGGGAATAT
TGAAGAAGAGCGCACCATGCGTTTTTTGCAAGACGCTGCTCAGAGCGTGGGGTTTGAAACGGATTTTTCTTACATTGATG
AGGTGGAATTTAATATAGAAGAGGGCGTGTTTAAAAACGGCTTGAATTATGAGTTTTTATTCAAACTGATCCCATGGGAA
AACATCGCTATTGATGAGCCAGAATTAGCCCTTTTGATGCAAGGCATGATGGAAAATAAAAACACGATTTTTTTAAACCC
CGCTTACACGATCCTTTTCCAATCCAAGCGTTTTTTAAAACTTTTATGGGACAGATACCCCAACCACCCCTTATTGTTAG
AAACGAGCTATGAACCTTTAGCCAATAAAAAGCAAATCAAAAAAGTGGCTTTTGGTAGGGAAGGGGCGAATAGTGAAATC
TTTGAAGCTTCCATGCAATCGCTTTTGAAAACGGATGGCGTTTATTCTAACCACAAACCCGTTTATCAAGAGTTTTACGA
GCTTAATTCGCATAACGGGTTGTATTATCAGCCTAACGTGTTTTTTGCTTATGAATCTTGCGCGCTAGGGTTTAGAAAAG
GGGGGCTAGTCTTGGATAATTTTTCTAAATTCGTGAGCCATAGGTTGCAATAA

Upstream 100 bases:

>100_bases
ACAGAGCGGTTTTTTTGGCTCTAGTAGGCCTACTAGCTCGCCGGCGGTAAGCTCTGGGACAAGGGGCTTTAACGCATAAA
ATCTATTTTAAGGTTAAAAA

Downstream 100 bases:

>100_bases
TGAGCGCAATGATGCGTTATTTTCACATCTATGCGACCACTTTTTTCTTCCCTTTGGCTCTTCTTTTTGCGATTAGCGGG
CTTTCATTGCTCTTTGGGGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 390; Mature: 390

Protein sequence:

>390_residues
MQVIPLKPLDNKTLEEIGLDWHTNDDMSSYIADEMVVVSQKEADAYYDACNELYDMFVETAEEAIQNDRFFELDIPNALI
PMIKQSFEEEVHWHIYGRFDLAGGLDGKPIKLLEFNADTPTMLYETAVIQWALLKANGYDENKQFNNLYEALGENFKRMV
TLGEDTSRFEEMYEGWKILFSSVRGNIEEERTMRFLQDAAQSVGFETDFSYIDEVEFNIEEGVFKNGLNYEFLFKLIPWE
NIAIDEPELALLMQGMMENKNTIFLNPAYTILFQSKRFLKLLWDRYPNHPLLLETSYEPLANKKQIKKVAFGREGANSEI
FEASMQSLLKTDGVYSNHKPVYQEFYELNSHNGLYYQPNVFFAYESCALGFRKGGLVLDNFSKFVSHRLQ

Sequences:

>Translated_390_residues
MQVIPLKPLDNKTLEEIGLDWHTNDDMSSYIADEMVVVSQKEADAYYDACNELYDMFVETAEEAIQNDRFFELDIPNALI
PMIKQSFEEEVHWHIYGRFDLAGGLDGKPIKLLEFNADTPTMLYETAVIQWALLKANGYDENKQFNNLYEALGENFKRMV
TLGEDTSRFEEMYEGWKILFSSVRGNIEEERTMRFLQDAAQSVGFETDFSYIDEVEFNIEEGVFKNGLNYEFLFKLIPWE
NIAIDEPELALLMQGMMENKNTIFLNPAYTILFQSKRFLKLLWDRYPNHPLLLETSYEPLANKKQIKKVAFGREGANSEI
FEASMQSLLKTDGVYSNHKPVYQEFYELNSHNGLYYQPNVFFAYESCALGFRKGGLVLDNFSKFVSHRLQ
>Mature_390_residues
MQVIPLKPLDNKTLEEIGLDWHTNDDMSSYIADEMVVVSQKEADAYYDACNELYDMFVETAEEAIQNDRFFELDIPNALI
PMIKQSFEEEVHWHIYGRFDLAGGLDGKPIKLLEFNADTPTMLYETAVIQWALLKANGYDENKQFNNLYEALGENFKRMV
TLGEDTSRFEEMYEGWKILFSSVRGNIEEERTMRFLQDAAQSVGFETDFSYIDEVEFNIEEGVFKNGLNYEFLFKLIPWE
NIAIDEPELALLMQGMMENKNTIFLNPAYTILFQSKRFLKLLWDRYPNHPLLLETSYEPLANKKQIKKVAFGREGANSEI
FEASMQSLLKTDGVYSNHKPVYQEFYELNSHNGLYYQPNVFFAYESCALGFRKGGLVLDNFSKFVSHRLQ

Specific function: Unknown

COG id: COG0754

COG function: function code E; Glutathionylspermidine synthase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To the N-terminal of E.coli gsp and to E.coli yjfC [H]

Homologues:

Organism=Escherichia coli, GI1789416, Length=398, Percent_Identity=28.894472361809, Blast_Score=133, Evalue=2e-32,
Organism=Escherichia coli, GI1790629, Length=351, Percent_Identity=28.2051282051282, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI1789361, Length=360, Percent_Identity=24.4444444444444, Blast_Score=93, Evalue=4e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005494
- InterPro:   IPR016185 [H]

Pfam domain/function: PF03738 GSP_synth [H]

EC number: NA

Molecular weight: Translated: 45419; Mature: 45419

Theoretical pI: Translated: 4.32; Mature: 4.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQVIPLKPLDNKTLEEIGLDWHTNDDMSSYIADEMVVVSQKEADAYYDACNELYDMFVET
CCCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHEEEECHHHHHHHHHHHHHHHHHHHH
AEEAIQNDRFFELDIPNALIPMIKQSFEEEVHWHIYGRFDLAGGLDGKPIKLLEFNADTP
HHHHHCCCCEEEEECCHHHHHHHHHHHHHCEEEEEEEEEEECCCCCCCCEEEEEECCCCC
TMLYETAVIQWALLKANGYDENKQFNNLYEALGENFKRMVTLGEDTSRFEEMYEGWKILF
HHHHHHHHHHEEEEECCCCCCCHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHH
SSVRGNIEEERTMRFLQDAAQSVGFETDFSYIDEVEFNIEEGVFKNGLNYEFLFKLIPWE
HHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCHHHHHHHCCCCCEEEEEECCCC
NIAIDEPELALLMQGMMENKNTIFLNPAYTILFQSKRFLKLLWDRYPNHPLLLETSYEPL
CCCCCCHHHHHHHHHHHCCCCEEEECCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCC
ANKKQIKKVAFGREGANSEIFEASMQSLLKTDGVYSNHKPVYQEFYELNSHNGLYYQPNV
CCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCEEECCCE
FFAYESCALGFRKGGLVLDNFSKFVSHRLQ
EEEEHHHHHHHCCCCEEHHHHHHHHHHHCC
>Mature Secondary Structure
MQVIPLKPLDNKTLEEIGLDWHTNDDMSSYIADEMVVVSQKEADAYYDACNELYDMFVET
CCCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHEEEECHHHHHHHHHHHHHHHHHHHH
AEEAIQNDRFFELDIPNALIPMIKQSFEEEVHWHIYGRFDLAGGLDGKPIKLLEFNADTP
HHHHHCCCCEEEEECCHHHHHHHHHHHHHCEEEEEEEEEEECCCCCCCCEEEEEECCCCC
TMLYETAVIQWALLKANGYDENKQFNNLYEALGENFKRMVTLGEDTSRFEEMYEGWKILF
HHHHHHHHHHEEEEECCCCCCCHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHH
SSVRGNIEEERTMRFLQDAAQSVGFETDFSYIDEVEFNIEEGVFKNGLNYEFLFKLIPWE
HHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCHHHHHHHCCCCCEEEEEECCCC
NIAIDEPELALLMQGMMENKNTIFLNPAYTILFQSKRFLKLLWDRYPNHPLLLETSYEPL
CCCCCCHHHHHHHHHHHCCCCEEEECCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCC
ANKKQIKKVAFGREGANSEIFEASMQSLLKTDGVYSNHKPVYQEFYELNSHNGLYYQPNV
CCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCEEECCCE
FFAYESCALGFRKGGLVLDNFSKFVSHRLQ
EEEEHHHHHHHCCCCEEHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]