| Definition | Helicobacter pylori HPAG1 chromosome, complete genome. |
|---|---|
| Accession | NC_008086 |
| Length | 1,596,366 |
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The map label for this gene is 108562579
Identifier: 108562579
GI number: 108562579
Start: 161196
End: 161798
Strand: Direct
Name: 108562579
Synonym: HPAG1_0154
Alternate gene names: NA
Gene position: 161196-161798 (Clockwise)
Preceding gene: 108562578
Following gene: 108562580
Centisome position: 10.1
GC content: 37.81
Gene sequence:
>603_bases ATGGTAGTGTTAAAAAAGATGATAGGTTTGGTGGTGGTTTTAAGCGTTTTATGGGCTAGAGACAACCCTTTTGAGTCTGA AATCAATTCCAAGAATTTGCAAGGGGGCTTTAATGGGATCTATGATAGCTATTTTAAAGAAATCCATGTGGATTTGCCCA CGAGCGCTAGGATCTTAAAACAAATCACGCTCACTTACCAGGATATTGATGGCTCTATCCATTCTAAAGTCGTGGGCATT GATAAAAGCATTGATTGGCATTACCCCTTAAAGCTCTCCCAACACACCCTTAATCAAGCCGCCTTTGAAAAACGCTACCA GATCCAAGATTTTGATTTTTTAATGGCAAACAACACGATGATTTTGCGTTCCCCTTATAAAATTTTGCGCTCTTTTGTGC TAGTCAATCCTTATAGAATCGTGTTAGACACGCAAAAAGGCCCTTTGGATATTTATCAAAATAGGGATTTAAACCAGAAG TTTTTTTCTCAAATTAAAGTTGGCACGCACAAAGATTATTACCGCATCACGCTCATTTTAGACGGGAAATACCGCTATCT TTTGGAAGAAAAAAACGGGGCGTATGAATTAAAATTGAAATAA
Upstream 100 bases:
>100_bases TGCAACAAGAAATCACCGAATTGCAAAGCAAGAATGTGCGTTTGCAAAAGCGTTTGTTTGAGTTGAAGGAATTACGGCCT AGAGATTAGATTTAAGGAAA
Downstream 100 bases:
>100_bases AAGCATGCGGCATTTAGTCTTAATCGGTTTTATGGGGAGCGGTAAAAGCTCTTTAGCGCAAGAATTGGGTCTGGCTTTGA AATTAGAAGTGTTGGATACG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 200; Mature: 200
Protein sequence:
>200_residues MVVLKKMIGLVVVLSVLWARDNPFESEINSKNLQGGFNGIYDSYFKEIHVDLPTSARILKQITLTYQDIDGSIHSKVVGI DKSIDWHYPLKLSQHTLNQAAFEKRYQIQDFDFLMANNTMILRSPYKILRSFVLVNPYRIVLDTQKGPLDIYQNRDLNQK FFSQIKVGTHKDYYRITLILDGKYRYLLEEKNGAYELKLK
Sequences:
>Translated_200_residues MVVLKKMIGLVVVLSVLWARDNPFESEINSKNLQGGFNGIYDSYFKEIHVDLPTSARILKQITLTYQDIDGSIHSKVVGI DKSIDWHYPLKLSQHTLNQAAFEKRYQIQDFDFLMANNTMILRSPYKILRSFVLVNPYRIVLDTQKGPLDIYQNRDLNQK FFSQIKVGTHKDYYRITLILDGKYRYLLEEKNGAYELKLK >Mature_200_residues MVVLKKMIGLVVVLSVLWARDNPFESEINSKNLQGGFNGIYDSYFKEIHVDLPTSARILKQITLTYQDIDGSIHSKVVGI DKSIDWHYPLKLSQHTLNQAAFEKRYQIQDFDFLMANNTMILRSPYKILRSFVLVNPYRIVLDTQKGPLDIYQNRDLNQK FFSQIKVGTHKDYYRITLILDGKYRYLLEEKNGAYELKLK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23414; Mature: 23414
Theoretical pI: Translated: 9.70; Mature: 9.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVVLKKMIGLVVVLSVLWARDNPFESEINSKNLQGGFNGIYDSYFKEIHVDLPTSARILK CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHEEECCCCHHHHHH QITLTYQDIDGSIHSKVVGIDKSIDWHYPLKLSQHTLNQAAFEKRYQIQDFDFLMANNTM HHHHHEECCCCCHHHEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCEE ILRSPYKILRSFVLVNPYRIVLDTQKGPLDIYQNRDLNQKFFSQIKVGTHKDYYRITLIL EEECHHHHHHHHHHCCCEEEEEECCCCCEEEECCCCCCHHHHHHHCCCCCCCEEEEEEEE DGKYRYLLEEKNGAYELKLK CCCEEEEEECCCCEEEEEEC >Mature Secondary Structure MVVLKKMIGLVVVLSVLWARDNPFESEINSKNLQGGFNGIYDSYFKEIHVDLPTSARILK CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHEEECCCCHHHHHH QITLTYQDIDGSIHSKVVGIDKSIDWHYPLKLSQHTLNQAAFEKRYQIQDFDFLMANNTM HHHHHEECCCCCHHHEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCEE ILRSPYKILRSFVLVNPYRIVLDTQKGPLDIYQNRDLNQKFFSQIKVGTHKDYYRITLIL EEECHHHHHHHHHHCCCEEEEEECCCCCEEEECCCCCCHHHHHHHCCCCCCCEEEEEEEE DGKYRYLLEEKNGAYELKLK CCCEEEEEECCCCEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA