Definition Helicobacter pylori HPAG1 chromosome, complete genome.
Accession NC_008086
Length 1,596,366

Click here to switch to the map view.

The map label for this gene is 108562579

Identifier: 108562579

GI number: 108562579

Start: 161196

End: 161798

Strand: Direct

Name: 108562579

Synonym: HPAG1_0154

Alternate gene names: NA

Gene position: 161196-161798 (Clockwise)

Preceding gene: 108562578

Following gene: 108562580

Centisome position: 10.1

GC content: 37.81

Gene sequence:

>603_bases
ATGGTAGTGTTAAAAAAGATGATAGGTTTGGTGGTGGTTTTAAGCGTTTTATGGGCTAGAGACAACCCTTTTGAGTCTGA
AATCAATTCCAAGAATTTGCAAGGGGGCTTTAATGGGATCTATGATAGCTATTTTAAAGAAATCCATGTGGATTTGCCCA
CGAGCGCTAGGATCTTAAAACAAATCACGCTCACTTACCAGGATATTGATGGCTCTATCCATTCTAAAGTCGTGGGCATT
GATAAAAGCATTGATTGGCATTACCCCTTAAAGCTCTCCCAACACACCCTTAATCAAGCCGCCTTTGAAAAACGCTACCA
GATCCAAGATTTTGATTTTTTAATGGCAAACAACACGATGATTTTGCGTTCCCCTTATAAAATTTTGCGCTCTTTTGTGC
TAGTCAATCCTTATAGAATCGTGTTAGACACGCAAAAAGGCCCTTTGGATATTTATCAAAATAGGGATTTAAACCAGAAG
TTTTTTTCTCAAATTAAAGTTGGCACGCACAAAGATTATTACCGCATCACGCTCATTTTAGACGGGAAATACCGCTATCT
TTTGGAAGAAAAAAACGGGGCGTATGAATTAAAATTGAAATAA

Upstream 100 bases:

>100_bases
TGCAACAAGAAATCACCGAATTGCAAAGCAAGAATGTGCGTTTGCAAAAGCGTTTGTTTGAGTTGAAGGAATTACGGCCT
AGAGATTAGATTTAAGGAAA

Downstream 100 bases:

>100_bases
AAGCATGCGGCATTTAGTCTTAATCGGTTTTATGGGGAGCGGTAAAAGCTCTTTAGCGCAAGAATTGGGTCTGGCTTTGA
AATTAGAAGTGTTGGATACG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 200; Mature: 200

Protein sequence:

>200_residues
MVVLKKMIGLVVVLSVLWARDNPFESEINSKNLQGGFNGIYDSYFKEIHVDLPTSARILKQITLTYQDIDGSIHSKVVGI
DKSIDWHYPLKLSQHTLNQAAFEKRYQIQDFDFLMANNTMILRSPYKILRSFVLVNPYRIVLDTQKGPLDIYQNRDLNQK
FFSQIKVGTHKDYYRITLILDGKYRYLLEEKNGAYELKLK

Sequences:

>Translated_200_residues
MVVLKKMIGLVVVLSVLWARDNPFESEINSKNLQGGFNGIYDSYFKEIHVDLPTSARILKQITLTYQDIDGSIHSKVVGI
DKSIDWHYPLKLSQHTLNQAAFEKRYQIQDFDFLMANNTMILRSPYKILRSFVLVNPYRIVLDTQKGPLDIYQNRDLNQK
FFSQIKVGTHKDYYRITLILDGKYRYLLEEKNGAYELKLK
>Mature_200_residues
MVVLKKMIGLVVVLSVLWARDNPFESEINSKNLQGGFNGIYDSYFKEIHVDLPTSARILKQITLTYQDIDGSIHSKVVGI
DKSIDWHYPLKLSQHTLNQAAFEKRYQIQDFDFLMANNTMILRSPYKILRSFVLVNPYRIVLDTQKGPLDIYQNRDLNQK
FFSQIKVGTHKDYYRITLILDGKYRYLLEEKNGAYELKLK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23414; Mature: 23414

Theoretical pI: Translated: 9.70; Mature: 9.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVVLKKMIGLVVVLSVLWARDNPFESEINSKNLQGGFNGIYDSYFKEIHVDLPTSARILK
CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHEEECCCCHHHHHH
QITLTYQDIDGSIHSKVVGIDKSIDWHYPLKLSQHTLNQAAFEKRYQIQDFDFLMANNTM
HHHHHEECCCCCHHHEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCEE
ILRSPYKILRSFVLVNPYRIVLDTQKGPLDIYQNRDLNQKFFSQIKVGTHKDYYRITLIL
EEECHHHHHHHHHHCCCEEEEEECCCCCEEEECCCCCCHHHHHHHCCCCCCCEEEEEEEE
DGKYRYLLEEKNGAYELKLK
CCCEEEEEECCCCEEEEEEC
>Mature Secondary Structure
MVVLKKMIGLVVVLSVLWARDNPFESEINSKNLQGGFNGIYDSYFKEIHVDLPTSARILK
CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHEEECCCCHHHHHH
QITLTYQDIDGSIHSKVVGIDKSIDWHYPLKLSQHTLNQAAFEKRYQIQDFDFLMANNTM
HHHHHEECCCCCHHHEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCEE
ILRSPYKILRSFVLVNPYRIVLDTQKGPLDIYQNRDLNQKFFSQIKVGTHKDYYRITLIL
EEECHHHHHHHHHHCCCEEEEEECCCCCEEEECCCCCCHHHHHHHCCCCCCCEEEEEEEE
DGKYRYLLEEKNGAYELKLK
CCCEEEEEECCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA