Click here to switch to the map view.

The map label for this gene is dapA [H]

Identifier: 107023088

GI number: 107023088

Start: 1710333

End: 1711229

Strand: Reverse

Name: dapA [H]

Synonym: Bcen_1537

Alternate gene names: 107023088

Gene position: 1711229-1710333 (Counterclockwise)

Preceding gene: 107023089

Following gene: 107023087

Centisome position: 51.94

GC content: 67.11

Gene sequence:

>897_bases
ATGTCAATTGCGTTCAAGGGAATCGTTCCCGCGCTGATCACGCCGATGACGGCGAACGAGAACGTCGATGAAGACGGCCT
GCGCGCGCTGGTCGAGCGGCTCATCGAGGCCGGCGTGCACGGCCTGTTCGTGCTCGGCACCAACGGTGAATTCATCGCGC
TGAATGAAGAAGAGAAGCTGCGCATCGCGCGGATCGCGGTCAGTCAGGCACGTTCGCGCGTGCCGGTCATCGCGGGAACC
GGTGCGTATGCGACGCGCGACGTGATCGACCTGAACCGGAAGATGGCCGATGCCGGCGTCGATGCCGTGTCCGTGATCAC
GCCGTATTTCAACGGCGCCACGCAGCCGGAACTCTACGCGCACTACAAGCAGATCGCCGACGCGACGCCGCTGCCGGTCA
TGCTTTACACGATTCCCGCGAAAGCGGGCATCACGCTGACCGTCGATACGGTGCGCCGCCTCGCGGAGATTCCGAACATC
CGCGGCATCAAGGATAGCGGCGGCGACTTCGACCGGTTGCTGCAACTGATCGACCTGCGGCGCGACGATTTCGCGGTCTT
CACCGGCACCGACTCGATGATCCTCTGGACGCTGATCGCCGGTGGCGACGGCGCGGTCGCCGCGACGACCAACGCCGTCC
CGCATGTCGTGATGTCGATCTGGAACAAGTTCCACGCCGGCGATATCGCCGGCGCACGCACCGCGCAGGAGTCGCTGCGC
GCGCTGCGCGACGCATTCGCACTCGGCACGATGCCCGTCGTGCTGAAAACCGCCGCGCAGATGCTCGGGATGCCGGCCGG
CCCTGCGCGCTCGCCCGCGCAGCCGCTCGATGCCCAGGCCCGCGAGCGCCTCGCGCAAGCGCTCTCCGTCTACCGCGACG
CCGCGCGCGGCCACTGA

Upstream 100 bases:

>100_bases
CGTGGTCGCGACCGCAAACGCGCCTTCCGCGCCGCTATCGACACAAGACAACCCTGCAGACGGCGATCCCGTCCGCCGTC
CTTTCCGCGATGGAGCCTGC

Downstream 100 bases:

>100_bases
AACAGGTCTCAGCATGACGACTTACCATTTCCAGACAGTCAGGCACATCGTCCACGGTGCAGGCAGCCTCGCCACGCTTC
CCGACAAGCTCGCGCTGCTC

Product: dihydrodipicolinate synthase

Products: NA

Alternate protein names: DHDPS [H]

Number of amino acids: Translated: 298; Mature: 297

Protein sequence:

>298_residues
MSIAFKGIVPALITPMTANENVDEDGLRALVERLIEAGVHGLFVLGTNGEFIALNEEEKLRIARIAVSQARSRVPVIAGT
GAYATRDVIDLNRKMADAGVDAVSVITPYFNGATQPELYAHYKQIADATPLPVMLYTIPAKAGITLTVDTVRRLAEIPNI
RGIKDSGGDFDRLLQLIDLRRDDFAVFTGTDSMILWTLIAGGDGAVAATTNAVPHVVMSIWNKFHAGDIAGARTAQESLR
ALRDAFALGTMPVVLKTAAQMLGMPAGPARSPAQPLDAQARERLAQALSVYRDAARGH

Sequences:

>Translated_298_residues
MSIAFKGIVPALITPMTANENVDEDGLRALVERLIEAGVHGLFVLGTNGEFIALNEEEKLRIARIAVSQARSRVPVIAGT
GAYATRDVIDLNRKMADAGVDAVSVITPYFNGATQPELYAHYKQIADATPLPVMLYTIPAKAGITLTVDTVRRLAEIPNI
RGIKDSGGDFDRLLQLIDLRRDDFAVFTGTDSMILWTLIAGGDGAVAATTNAVPHVVMSIWNKFHAGDIAGARTAQESLR
ALRDAFALGTMPVVLKTAAQMLGMPAGPARSPAQPLDAQARERLAQALSVYRDAARGH
>Mature_297_residues
SIAFKGIVPALITPMTANENVDEDGLRALVERLIEAGVHGLFVLGTNGEFIALNEEEKLRIARIAVSQARSRVPVIAGTG
AYATRDVIDLNRKMADAGVDAVSVITPYFNGATQPELYAHYKQIADATPLPVMLYTIPAKAGITLTVDTVRRLAEIPNIR
GIKDSGGDFDRLLQLIDLRRDDFAVFTGTDSMILWTLIAGGDGAVAATTNAVPHVVMSIWNKFHAGDIAGARTAQESLRA
LRDAFALGTMPVVLKTAAQMLGMPAGPARSPAQPLDAQARERLAQALSVYRDAARGH

Specific function: Unknown

COG id: COG0329

COG function: function code EM; Dihydrodipicolinate synthase/N-acetylneuraminate lyase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DHDPS family [H]

Homologues:

Organism=Homo sapiens, GI31543060, Length=282, Percent_Identity=33.3333333333333, Blast_Score=142, Evalue=3e-34,
Organism=Homo sapiens, GI13540533, Length=279, Percent_Identity=31.1827956989247, Blast_Score=112, Evalue=3e-25,
Organism=Escherichia coli, GI1786463, Length=282, Percent_Identity=38.2978723404255, Blast_Score=174, Evalue=5e-45,
Organism=Escherichia coli, GI1788823, Length=285, Percent_Identity=34.0350877192982, Blast_Score=172, Evalue=3e-44,
Organism=Escherichia coli, GI87082415, Length=266, Percent_Identity=35.7142857142857, Blast_Score=157, Evalue=7e-40,
Organism=Escherichia coli, GI1789620, Length=283, Percent_Identity=29.6819787985866, Blast_Score=135, Evalue=2e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR005263
- InterPro:   IPR002220
- InterPro:   IPR020625
- InterPro:   IPR020624 [H]

Pfam domain/function: PF00701 DHDPS [H]

EC number: =4.2.1.52 [H]

Molecular weight: Translated: 31867; Mature: 31736

Theoretical pI: Translated: 6.69; Mature: 6.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIAFKGIVPALITPMTANENVDEDGLRALVERLIEAGVHGLFVLGTNGEFIALNEEEKL
CCCCHHCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCEEEECCHHHH
RIARIAVSQARSRVPVIAGTGAYATRDVIDLNRKMADAGVDAVSVITPYFNGATQPELYA
HHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHH
HYKQIADATPLPVMLYTIPAKAGITLTVDTVRRLAEIPNIRGIKDSGGDFDRLLQLIDLR
HHHHHCCCCCCCEEEEEECCCCCCEEEHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCC
RDDFAVFTGTDSMILWTLIAGGDGAVAATTNAVPHVVMSIWNKFHAGDIAGARTAQESLR
CCCEEEEECCCCEEEEEEEECCCCCEEEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
ALRDAFALGTMPVVLKTAAQMLGMPAGPARSPAQPLDAQARERLAQALSVYRDAARGH
HHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SIAFKGIVPALITPMTANENVDEDGLRALVERLIEAGVHGLFVLGTNGEFIALNEEEKL
CCCHHCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCEEEECCHHHH
RIARIAVSQARSRVPVIAGTGAYATRDVIDLNRKMADAGVDAVSVITPYFNGATQPELYA
HHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHH
HYKQIADATPLPVMLYTIPAKAGITLTVDTVRRLAEIPNIRGIKDSGGDFDRLLQLIDLR
HHHHHCCCCCCCEEEEEECCCCCCEEEHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCC
RDDFAVFTGTDSMILWTLIAGGDGAVAATTNAVPHVVMSIWNKFHAGDIAGARTAQESLR
CCCEEEEECCCCEEEEEEEECCCCCEEEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
ALRDAFALGTMPVVLKTAAQMLGMPAGPARSPAQPLDAQARERLAQALSVYRDAARGH
HHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11930014 [H]