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The map label for this gene is cydA [H]

Identifier: 107022974

GI number: 107022974

Start: 1573916

End: 1575391

Strand: Reverse

Name: cydA [H]

Synonym: Bcen_1422

Alternate gene names: 107022974

Gene position: 1575391-1573916 (Counterclockwise)

Preceding gene: 107022980

Following gene: 107022973

Centisome position: 47.82

GC content: 64.16

Gene sequence:

>1476_bases
ATGTGTCGTCGCCAAGCCGTCGCGCGATTTCCTGCTTCGAGCGTACGTCCTCACAACCACGAGCAAATTACGGTCATGGA
AATCTTCGATGCGTTCCATCTCGCCCGATTGCAATTCGCATTCACGGTGTCGTTCCACATCGTGTTCCCCGCGATCAGCA
TCGGCATGGCGAGCTTCCTGGCAGTGCTGGAATGGCGCTATCTCGTCACCGGCGACGCCGCCTACAAATCCATGTTTCAG
TTCTGGTCGAAGATCTTCGCGATCGGCTTCGGGATGGGCGTGGTTTCCGGCGTCGTGATGGCGTACGAGTTCGGCACCAA
CTGGGCCGGATTCTCGCGCGTCGCGGGGAACATCACCGGCCCGCTGCTCACGTATGAAGTGCTGACGGCGTTCTTCCTCG
AAGCCGGCTTTCTCGGCGTGATGCTGTTCGGCTGGCAGCGCGTCAGCCCGCGCGCGCACTTCTTCGCGACGCTGATGGTC
GCGGTCGGCACGCTGATCTCGACGTTCTGGATTCTCGCGTCAAACAGCTTCATGCAGACGCCGCAAGGCTACAAGATCGA
GAACGGCCTCGTCGTGCCGGTCGACTGGTTCAAGATCGTCTTCAACCCGTCGTTTCCGTACCGTCTCGTGCACATGACGA
TCGCGGCGTTCATCGTCGCGGGCTTCATCGTCGCCGCGTGCGGCGCGTGGCACCTGCTGAAGGGGCGCCGCGACGAGCCG
GTGAAGCGCAGCTTCTCGATGGCGCTGTGGATGCTGCTGGTGCTCGCGCCGATCCAGATCGTCGTCGGCGACGCGCACGG
GCTGAACACGCGCGAATACCAGCCGGCGAAGATCGCGGCGATCGAAGGGCTGTGGGAAACCGAGAAGGGCGGCACCGCGC
TGAACCTCGTCGGGCTGCCCGACATGCAGGCCGAAACCACGCGCTATGCGATCCAGGTGCCGCACCTCGGCAGCCTGATC
CTCACGCACAGCTGGGACGGCGAGATCCGCGGGCTGAAGGAATTCCCGCCGCAGGACCGCCCGTATTCGCCGATCATCTT
CTGGACGTTCCGGATCATGGCCGGCCTCGGGATGCTGATGCTGCTCACCGCGCTGCTCGGGCTGCTGCTGAGAAAGGGCG
GGCGCCTGTATGAAACGCGCTGGTTCCAGTGGTTCGTGGTGGCGATGGGGCCGTCGGGCATCGTCGCGCTGCTGGCCGGC
TGGATCACGACCGAGGTCGGGCGGCAGCCGTGGACCGTGTACGGCGTGCTGCGCACCATCGACTCGGTCTCCCCGCTCAC
CGCCCAGCAGGTCGGCGTGTCGCTGCTGGTCTTCGTGGTCGTGTATTTCCTGGTATTCGGAACGGGTATCTACTACATGA
TGAAACTGATGAAGCGCGGGCCGGCGGCCCAGGCCGGCTACATCGAACTGCACCGGCATCCGGGGCTGCGCAAGAGCGCG
CTGTCCACGCCGCTGAACGTCACCGAGGCGGAGTAA

Upstream 100 bases:

>100_bases
AGCACAGTTTCAGCGCACGTTCGAGTGATTGCGAGTATCGTTGCAAACGCGATATCGTCATTCACGCTTCGATGCCGTGC
GAGCGATCGTTTGTGTTCGC

Downstream 100 bases:

>100_bases
CCATGCACATCGATCTTCCTGTCGTCTGGGCCGCGATCATCGGCCTCGGCGTATTCATCTACGTGATGCTGGACGGCTTC
GATCTCGGCATCGGGCTGCT

Product: cytochrome bd ubiquinol oxidase, subunit I

Products: Ubiquinone-8; H2O. [C]

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 491; Mature: 491

Protein sequence:

>491_residues
MCRRQAVARFPASSVRPHNHEQITVMEIFDAFHLARLQFAFTVSFHIVFPAISIGMASFLAVLEWRYLVTGDAAYKSMFQ
FWSKIFAIGFGMGVVSGVVMAYEFGTNWAGFSRVAGNITGPLLTYEVLTAFFLEAGFLGVMLFGWQRVSPRAHFFATLMV
AVGTLISTFWILASNSFMQTPQGYKIENGLVVPVDWFKIVFNPSFPYRLVHMTIAAFIVAGFIVAACGAWHLLKGRRDEP
VKRSFSMALWMLLVLAPIQIVVGDAHGLNTREYQPAKIAAIEGLWETEKGGTALNLVGLPDMQAETTRYAIQVPHLGSLI
LTHSWDGEIRGLKEFPPQDRPYSPIIFWTFRIMAGLGMLMLLTALLGLLLRKGGRLYETRWFQWFVVAMGPSGIVALLAG
WITTEVGRQPWTVYGVLRTIDSVSPLTAQQVGVSLLVFVVVYFLVFGTGIYYMMKLMKRGPAAQAGYIELHRHPGLRKSA
LSTPLNVTEAE

Sequences:

>Translated_491_residues
MCRRQAVARFPASSVRPHNHEQITVMEIFDAFHLARLQFAFTVSFHIVFPAISIGMASFLAVLEWRYLVTGDAAYKSMFQ
FWSKIFAIGFGMGVVSGVVMAYEFGTNWAGFSRVAGNITGPLLTYEVLTAFFLEAGFLGVMLFGWQRVSPRAHFFATLMV
AVGTLISTFWILASNSFMQTPQGYKIENGLVVPVDWFKIVFNPSFPYRLVHMTIAAFIVAGFIVAACGAWHLLKGRRDEP
VKRSFSMALWMLLVLAPIQIVVGDAHGLNTREYQPAKIAAIEGLWETEKGGTALNLVGLPDMQAETTRYAIQVPHLGSLI
LTHSWDGEIRGLKEFPPQDRPYSPIIFWTFRIMAGLGMLMLLTALLGLLLRKGGRLYETRWFQWFVVAMGPSGIVALLAG
WITTEVGRQPWTVYGVLRTIDSVSPLTAQQVGVSLLVFVVVYFLVFGTGIYYMMKLMKRGPAAQAGYIELHRHPGLRKSA
LSTPLNVTEAE
>Mature_491_residues
MCRRQAVARFPASSVRPHNHEQITVMEIFDAFHLARLQFAFTVSFHIVFPAISIGMASFLAVLEWRYLVTGDAAYKSMFQ
FWSKIFAIGFGMGVVSGVVMAYEFGTNWAGFSRVAGNITGPLLTYEVLTAFFLEAGFLGVMLFGWQRVSPRAHFFATLMV
AVGTLISTFWILASNSFMQTPQGYKIENGLVVPVDWFKIVFNPSFPYRLVHMTIAAFIVAGFIVAACGAWHLLKGRRDEP
VKRSFSMALWMLLVLAPIQIVVGDAHGLNTREYQPAKIAAIEGLWETEKGGTALNLVGLPDMQAETTRYAIQVPHLGSLI
LTHSWDGEIRGLKEFPPQDRPYSPIIFWTFRIMAGLGMLMLLTALLGLLLRKGGRLYETRWFQWFVVAMGPSGIVALLAG
WITTEVGRQPWTVYGVLRTIDSVSPLTAQQVGVSLLVFVVVYFLVFGTGIYYMMKLMKRGPAAQAGYIELHRHPGLRKSA
LSTPLNVTEAE

Specific function: Cytochrome D Terminal Oxidase Complex Is The Component Of The Aerobic Respiratory Chain Of E.Coli That Predominates When Cells Are Grown At Low Aeration. [C]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI87081779, Length=313, Percent_Identity=38.0191693290735, Blast_Score=231, Evalue=8e-62,
Organism=Escherichia coli, GI1787212, Length=318, Percent_Identity=35.5345911949685, Blast_Score=223, Evalue=2e-59,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.- [C]

Molecular weight: Translated: 54728; Mature: 54728

Theoretical pI: Translated: 9.88; Mature: 9.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCRRQAVARFPASSVRPHNHEQITVMEIFDAFHLARLQFAFTVSFHIVFPAISIGMASFL
CCCHHHHHHCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHH
AVLEWRYLVTGDAAYKSMFQFWSKIFAIGFGMGVVSGVVMAYEFGTNWAGFSRVAGNITG
HHHHHHHEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCC
PLLTYEVLTAFFLEAGFLGVMLFGWQRVSPRAHFFATLMVAVGTLISTFWILASNSFMQT
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHCC
PQGYKIENGLVVPVDWFKIVFNPSFPYRLVHMTIAAFIVAGFIVAACGAWHLLKGRRDEP
CCCCEECCCEEEEEEHEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
VKRSFSMALWMLLVLAPIQIVVGDAHGLNTREYQPAKIAAIEGLWETEKGGTALNLVGLP
HHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCHHHEEHHCCCCCCCCCCEEEEECCC
DMQAETTRYAIQVPHLGSLILTHSWDGEIRGLKEFPPQDRPYSPIIFWTFRIMAGLGMLM
CCCCCCCEEEEECCCCCCEEEEECCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHH
LLTALLGLLLRKGGRLYETRWFQWFVVAMGPSGIVALLAGWITTEVGRQPWTVYGVLRTI
HHHHHHHHHHHCCCCEEEEHHEEEEEEEECCCHHHHHHHHHHHHHCCCCCHHHHHHHHHH
DSVSPLTAQQVGVSLLVFVVVYFLVFGTGIYYMMKLMKRGPAAQAGYIELHRHPGLRKSA
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHH
LSTPLNVTEAE
HCCCCCCCCCC
>Mature Secondary Structure
MCRRQAVARFPASSVRPHNHEQITVMEIFDAFHLARLQFAFTVSFHIVFPAISIGMASFL
CCCHHHHHHCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHH
AVLEWRYLVTGDAAYKSMFQFWSKIFAIGFGMGVVSGVVMAYEFGTNWAGFSRVAGNITG
HHHHHHHEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCC
PLLTYEVLTAFFLEAGFLGVMLFGWQRVSPRAHFFATLMVAVGTLISTFWILASNSFMQT
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHCC
PQGYKIENGLVVPVDWFKIVFNPSFPYRLVHMTIAAFIVAGFIVAACGAWHLLKGRRDEP
CCCCEECCCEEEEEEHEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
VKRSFSMALWMLLVLAPIQIVVGDAHGLNTREYQPAKIAAIEGLWETEKGGTALNLVGLP
HHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCHHHEEHHCCCCCCCCCCEEEEECCC
DMQAETTRYAIQVPHLGSLILTHSWDGEIRGLKEFPPQDRPYSPIIFWTFRIMAGLGMLM
CCCCCCCEEEEECCCCCCEEEEECCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHH
LLTALLGLLLRKGGRLYETRWFQWFVVAMGPSGIVALLAGWITTEVGRQPWTVYGVLRTI
HHHHHHHHHHHCCCCEEEEHHEEEEEEEECCCHHHHHHHHHHHHHCCCCCHHHHHHHHHH
DSVSPLTAQQVGVSLLVFVVVYFLVFGTGIYYMMKLMKRGPAAQAGYIELHRHPGLRKSA
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHH
LSTPLNVTEAE
HCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Ubiquinol-8; O(2) [C]

Specific reaction: Ubiquinol-8 + O(2) = Ubiquinone-8 + H2O. [C]

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]