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The map label for this gene is cydB [H]

Identifier: 107022973

GI number: 107022973

Start: 1572906

End: 1573913

Strand: Reverse

Name: cydB [H]

Synonym: Bcen_1421

Alternate gene names: 107022973

Gene position: 1573913-1572906 (Counterclockwise)

Preceding gene: 107022974

Following gene: 107022972

Centisome position: 47.77

GC content: 65.58

Gene sequence:

>1008_bases
ATGCACATCGATCTTCCTGTCGTCTGGGCCGCGATCATCGGCCTCGGCGTATTCATCTACGTGATGCTGGACGGCTTCGA
TCTCGGCATCGGGCTGCTGTTTCCGTTCTTCGATGCGAAGGCCGAGCGCCAGGTGATGCTCGACACCGTCGCGCCGGTGT
GGGACGGCAACGAGACGTTCCTCGTGCTCGGCGGCGCGGGCCTCTATGGCGCGTTCCCGGTCGTGTATTCGACGCTGCTG
CCGGCCAACTACCTGCCGCTGGTGCTGATGCTGGTCGGGCTGATCTTCCGGGGCGCGGCGTTCGAGCTGCGTGCGAAAGC
CACCCGCACGCAGCACATGTGGGATCTCGCGTTCATCGGCGGCTCGGCGCTGGCGGCGTTCTGCCAAGGGATCGTGCTCG
GTTCGCTGCTGCAGGGCATCAAGATCGAGAACAACCAGTTCGCGGGCGGGCCGTTCGACTGGCTGTCGCCGTTCAGCATG
ATGTGCGGGATCGGCGTGCTCGTCACCTATGCGACGCTCGGCTGCGGCTGGCTGATCCTGAAGGTCGACGGCGAACTGCA
GCGCAAGATGCGGTTGCTGATGAAGCCGCTCACGGGCGTGCTGCTCGCGGTGATGGGCGTGGTGAGCCTGTGGACCGTGA
TCGGGCTGCCGGCCGTCGCGCACCGCTGGTTCGGCAGCGGCAACCTCGGCTGGTTCCTGCCGGTGCCGATCCTCGTTGTC
GCGTGCGTGTGGGGTATCTTCCACACGGTGAAGCGTGCGCACGAGGCCACGCCGTTCCTGCTGACGCTCGCGCTCGTGTT
CCTCGGCTACACGGGGCTCGTGATCAGCATCTGGCCGAACATCGTGCCGCCGTCGCTGACGATCTGGGACGCGTCGTCGA
GCCATTCGAGCCAGTTGTTCGCGCTGGTCGGCACCGTGATCGTGCTGCCGATCATCCTCGTGTACAACGCGATGCAGTAC
CGCGTGTTCCGCGGCAAGGTGCGCGAGGGCGATATCGGCTATCACTGA

Upstream 100 bases:

>100_bases
GGCCGGCGGCCCAGGCCGGCTACATCGAACTGCACCGGCATCCGGGGCTGCGCAAGAGCGCGCTGTCCACGCCGCTGAAC
GTCACCGAGGCGGAGTAACC

Downstream 100 bases:

>100_bases
GCGGCAAGCGAGGTGACGGGGCGCGGCGGTCGCGTATCATCACGCGCAGCGCGGCGCCCGGCACGGCACCCGATAGAAAG
CGGCCCGCCACGCGCGGGCC

Product: cytochrome d ubiquinol oxidase, subunit II

Products: NA

Alternate protein names: Cytochrome bd-I oxidase subunit II; Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 335; Mature: 335

Protein sequence:

>335_residues
MHIDLPVVWAAIIGLGVFIYVMLDGFDLGIGLLFPFFDAKAERQVMLDTVAPVWDGNETFLVLGGAGLYGAFPVVYSTLL
PANYLPLVLMLVGLIFRGAAFELRAKATRTQHMWDLAFIGGSALAAFCQGIVLGSLLQGIKIENNQFAGGPFDWLSPFSM
MCGIGVLVTYATLGCGWLILKVDGELQRKMRLLMKPLTGVLLAVMGVVSLWTVIGLPAVAHRWFGSGNLGWFLPVPILVV
ACVWGIFHTVKRAHEATPFLLTLALVFLGYTGLVISIWPNIVPPSLTIWDASSSHSSQLFALVGTVIVLPIILVYNAMQY
RVFRGKVREGDIGYH

Sequences:

>Translated_335_residues
MHIDLPVVWAAIIGLGVFIYVMLDGFDLGIGLLFPFFDAKAERQVMLDTVAPVWDGNETFLVLGGAGLYGAFPVVYSTLL
PANYLPLVLMLVGLIFRGAAFELRAKATRTQHMWDLAFIGGSALAAFCQGIVLGSLLQGIKIENNQFAGGPFDWLSPFSM
MCGIGVLVTYATLGCGWLILKVDGELQRKMRLLMKPLTGVLLAVMGVVSLWTVIGLPAVAHRWFGSGNLGWFLPVPILVV
ACVWGIFHTVKRAHEATPFLLTLALVFLGYTGLVISIWPNIVPPSLTIWDASSSHSSQLFALVGTVIVLPIILVYNAMQY
RVFRGKVREGDIGYH
>Mature_335_residues
MHIDLPVVWAAIIGLGVFIYVMLDGFDLGIGLLFPFFDAKAERQVMLDTVAPVWDGNETFLVLGGAGLYGAFPVVYSTLL
PANYLPLVLMLVGLIFRGAAFELRAKATRTQHMWDLAFIGGSALAAFCQGIVLGSLLQGIKIENNQFAGGPFDWLSPFSM
MCGIGVLVTYATLGCGWLILKVDGELQRKMRLLMKPLTGVLLAVMGVVSLWTVIGLPAVAHRWFGSGNLGWFLPVPILVV
ACVWGIFHTVKRAHEATPFLLTLALVFLGYTGLVISIWPNIVPPSLTIWDASSSHSSQLFALVGTVIVLPIILVYNAMQY
RVFRGKVREGDIGYH

Specific function: Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration [H]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli AppB [H]

Homologues:

Organism=Escherichia coli, GI1786954, Length=368, Percent_Identity=27.7173913043478, Blast_Score=134, Evalue=1e-32,
Organism=Escherichia coli, GI1787213, Length=362, Percent_Identity=27.6243093922652, Blast_Score=122, Evalue=5e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 36496; Mature: 36496

Theoretical pI: Translated: 7.99; Mature: 7.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHIDLPVVWAAIIGLGVFIYVMLDGFDLGIGLLFPFFDAKAERQVMLDTVAPVWDGNETF
CCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCEE
LVLGGAGLYGAFPVVYSTLLPANYLPLVLMLVGLIFRGAAFELRAKATRTQHMWDLAFIG
EEEECCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC
GSALAAFCQGIVLGSLLQGIKIENNQFAGGPFDWLSPFSMMCGIGVLVTYATLGCGWLIL
HHHHHHHHHHHHHHHHHHCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEE
KVDGELQRKMRLLMKPLTGVLLAVMGVVSLWTVIGLPAVAHRWFGSGNLGWFLPVPILVV
EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCHHHHHHHHHH
ACVWGIFHTVKRAHEATPFLLTLALVFLGYTGLVISIWPNIVPPSLTIWDASSSHSSQLF
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHH
ALVGTVIVLPIILVYNAMQYRVFRGKVREGDIGYH
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MHIDLPVVWAAIIGLGVFIYVMLDGFDLGIGLLFPFFDAKAERQVMLDTVAPVWDGNETF
CCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCEE
LVLGGAGLYGAFPVVYSTLLPANYLPLVLMLVGLIFRGAAFELRAKATRTQHMWDLAFIG
EEEECCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC
GSALAAFCQGIVLGSLLQGIKIENNQFAGGPFDWLSPFSMMCGIGVLVTYATLGCGWLIL
HHHHHHHHHHHHHHHHHHCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEE
KVDGELQRKMRLLMKPLTGVLLAVMGVVSLWTVIGLPAVAHRWFGSGNLGWFLPVPILVV
EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCHHHHHHHHHH
ACVWGIFHTVKRAHEATPFLLTLALVFLGYTGLVISIWPNIVPPSLTIWDASSSHSSQLF
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHH
ALVGTVIVLPIILVYNAMQYRVFRGKVREGDIGYH
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]