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The map label for this gene is yggS [C]

Identifier: 107021807

GI number: 107021807

Start: 265656

End: 266375

Strand: Reverse

Name: yggS [C]

Synonym: Bcen_0247

Alternate gene names: 107021807

Gene position: 266375-265656 (Counterclockwise)

Preceding gene: 107021808

Following gene: 107021806

Centisome position: 8.09

GC content: 72.36

Gene sequence:

>720_bases
GTGCCTGCTTTCGTGCCCGTCATGTCCGATCTCGCCGCCCGCCTCGCCTCCGTTCATCGCCGCATCGCCGACGCCGCCCG
CGCGGCCGGCCGCGATCCCGCCGCCGTCTCGCTGCTCGCCGTGTCGAAGACGTTCCCGGCCGACGACGTGCGCGCCGCGC
ATGCGGCCGGGCAGCGCGCGTTCGGCGAGAACTACGTGCAGGAGTCGATCGACAAGATCGACGCGCTCGCCGACCTGCGC
GCGAGCCTCGAATGGCATTTCATCGGGCCGCTGCAATCGAACAAGACGCGCCCCGTCGCCGAACGCTTCGACTGGGTCCA
TTCGGTCGACCGGCTGAAGATCGCGCAGCGCCTGTCGGAACAGCGCCCCGCGCACCTGCCGCCGCTCAACGTGTGCGTGC
AGGTGAACATCAGCGGCGAGGCGTCGAAGAGCGGCGTCGCGCCGGCCGACGTGGCCGAGGTCGCGCGGGCGGTCGCCGCG
CTGCCGTCGCTGCGGCTGCGCGGCCTGATGGCGATTCCCGAGCCGGCCGACGACACCGACGCGCAACGCGCGCCGCATCG
CGCACTGCGCGCGTTGTTCGACACGTTGCGCGCCGACGGCCTGCCGCTCGACACGCTGTCGATGGGCATGTCCGCCGATC
TCGACGCGGCCGTGCTCGAAGGCGCGACGATCGTGCGCGTCGGCACCGCGATCTTCGGCGCGCGCGATTACGCGCACTGA

Upstream 100 bases:

>100_bases
AACGGGTGGACGGGCGCACGCGCGGCGTCCGTATAATGAGCGGATCGATGCGCCGCGTGTCGCGGCGCATCGGCTTCATG
CCCGCTTCCGTGCTGCTTCC

Downstream 100 bases:

>100_bases
ACGCCGCGCCCTTTTCCGCCTTTCCGTTCACTCACTCGCTCATTCCCGACATCATGAAAATCGCATTCATCGGCGGCGGC
AACATGGCCGCGGCCCTGAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 239; Mature: 238

Protein sequence:

>239_residues
MPAFVPVMSDLAARLASVHRRIADAARAAGRDPAAVSLLAVSKTFPADDVRAAHAAGQRAFGENYVQESIDKIDALADLR
ASLEWHFIGPLQSNKTRPVAERFDWVHSVDRLKIAQRLSEQRPAHLPPLNVCVQVNISGEASKSGVAPADVAEVARAVAA
LPSLRLRGLMAIPEPADDTDAQRAPHRALRALFDTLRADGLPLDTLSMGMSADLDAAVLEGATIVRVGTAIFGARDYAH

Sequences:

>Translated_239_residues
MPAFVPVMSDLAARLASVHRRIADAARAAGRDPAAVSLLAVSKTFPADDVRAAHAAGQRAFGENYVQESIDKIDALADLR
ASLEWHFIGPLQSNKTRPVAERFDWVHSVDRLKIAQRLSEQRPAHLPPLNVCVQVNISGEASKSGVAPADVAEVARAVAA
LPSLRLRGLMAIPEPADDTDAQRAPHRALRALFDTLRADGLPLDTLSMGMSADLDAAVLEGATIVRVGTAIFGARDYAH
>Mature_238_residues
PAFVPVMSDLAARLASVHRRIADAARAAGRDPAAVSLLAVSKTFPADDVRAAHAAGQRAFGENYVQESIDKIDALADLRA
SLEWHFIGPLQSNKTRPVAERFDWVHSVDRLKIAQRLSEQRPAHLPPLNVCVQVNISGEASKSGVAPADVAEVARAVAAL
PSLRLRGLMAIPEPADDTDAQRAPHRALRALFDTLRADGLPLDTLSMGMSADLDAAVLEGATIVRVGTAIFGARDYAH

Specific function: Perhaps involved in proline biosynthesis [H]

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=238, Percent_Identity=41.1764705882353, Blast_Score=135, Evalue=4e-32,
Organism=Escherichia coli, GI1789321, Length=232, Percent_Identity=56.8965517241379, Blast_Score=258, Evalue=3e-70,
Organism=Caenorhabditis elegans, GI17533025, Length=237, Percent_Identity=35.8649789029536, Blast_Score=122, Evalue=1e-28,
Organism=Saccharomyces cerevisiae, GI6319435, Length=240, Percent_Identity=35.8333333333333, Blast_Score=121, Evalue=1e-28,
Organism=Drosophila melanogaster, GI45550861, Length=244, Percent_Identity=37.7049180327869, Blast_Score=124, Evalue=6e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 25502; Mature: 25371

Theoretical pI: Translated: 6.90; Mature: 6.90

Prosite motif: PS01211 UPF0001

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPAFVPVMSDLAARLASVHRRIADAARAAGRDPAAVSLLAVSKTFPADDVRAAHAAGQRA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHEEHHHHHCCCCCHHHHHHHHHHHHH
FGENYVQESIDKIDALADLRASLEWHFIGPLQSNKTRPVAERFDWVHSVDRLKIAQRLSE
HHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
QRPAHLPPLNVCVQVNISGEASKSGVAPADVAEVARAVAALPSLRLRGLMAIPEPADDTD
CCCCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCEEECCCCCCCCH
AQRAPHRALRALFDTLRADGLPLDTLSMGMSADLDAAVLEGATIVRVGTAIFGARDYAH
HHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCHHHHHCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PAFVPVMSDLAARLASVHRRIADAARAAGRDPAAVSLLAVSKTFPADDVRAAHAAGQRA
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHEEHHHHHCCCCCHHHHHHHHHHHHH
FGENYVQESIDKIDALADLRASLEWHFIGPLQSNKTRPVAERFDWVHSVDRLKIAQRLSE
HHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
QRPAHLPPLNVCVQVNISGEASKSGVAPADVAEVARAVAALPSLRLRGLMAIPEPADDTD
CCCCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCEEECCCCCCCCH
AQRAPHRALRALFDTLRADGLPLDTLSMGMSADLDAAVLEGATIVRVGTAIFGARDYAH
HHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCHHHHHCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1676385; 10984043; 2107123 [H]