Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103488520

Identifier: 103488520

GI number: 103488520

Start: 3194476

End: 3195258

Strand: Direct

Name: 103488520

Synonym: Sala_3044

Alternate gene names: NA

Gene position: 3194476-3195258 (Clockwise)

Preceding gene: 103488518

Following gene: 103488521

Centisome position: 95.5

GC content: 66.41

Gene sequence:

>783_bases
ATGGCGGCAACCAGCGATCCGGAAAATGTGGCGCGCGCATTTATCGACGCGCGTGCGGGAAAGACACCGCTTACCGTCTA
TCCCGGCGCGTTTCCGCAAACGATGGCGGAGGCCTATGCGATCCAGGATCGCGCGATCGCCCTCGACGGGCGGCGCGTCG
GCGGGTGGAAGGTCGGACGAATCGCCCCCGAACTCGTCGACCGCTTTGGCGGCAATCGCCTGACCGGCCCGATCTTCGCC
GACGAAATCGTCGACGGTGCCGCCGATCCGGCGATGCCGGTCTATGCCGACGGCTTCGCCGCGGCCGAGGCAGAGGTGTT
GCTCTGTTTCGGCGAGGTGGGCCCGCGCGACTATAGCATCGACAGCGTGAAGCAGTGCATCGCCGACGTGCGCACGGGGA
TCGAGATCGCTAGCTCGCCTTTCCCCGAAATCAACCGCCACGGTCCCGCAGTGACGGCGTCCGACTATGGCAACAACAAG
GGGCTGATCCTCGGCCCGTCGATCCCCGACTGGCAGGATGCCGACCTCATCCACATGCCCGTCGAGATGTTCGTCGATGG
CGCGCGCGTCGGCGCCGGGACGATGGAGGCGATGCTCGACGGCCCGTTCGGATCGGCGCTGTTCCTGATCGACACATTGC
GCGCGCGCGGCATTGCAATTGCGCCCGGCACCTGGGTGTCGGCGGGCGCGATCACCGGTATTCACGAGGTCCGGCCCGGC
CAGCGGGCCGAAGCGCTGTTCGACGGAAAGATCCGCGTCGGCTGCACGATCACAAGTTATTAG

Upstream 100 bases:

>100_bases
GTCGCCGTCGCCGATACGGATCGCGCGATTCATCGGATATTCGCTTGCCTTTGACACCGGTGTCTCTTACACCGCTTCGC
GGAAGAGGGAAATGGGAAAG

Downstream 100 bases:

>100_bases
AAGCGCAACACGGGAGAGGATGATGGCACAGGCAATCGCAGACAGGGGTGCGGCGGTGCCGGTGCCCCGTTCGGGCCGCT
ACCGCTGGCTGATCGTCGCG

Product: 2-keto-4-pentenoate hydratase, putative

Products: 2-oxopent-4-enoate; H2O

Alternate protein names: 2-Keto-4-Pentenoate Hydratase-Like Protein; Fumarylacetoacetate Hydrolase; 2-Keto-4-Pentenoate Hydratase Family Protein

Number of amino acids: Translated: 260; Mature: 259

Protein sequence:

>260_residues
MAATSDPENVARAFIDARAGKTPLTVYPGAFPQTMAEAYAIQDRAIALDGRRVGGWKVGRIAPELVDRFGGNRLTGPIFA
DEIVDGAADPAMPVYADGFAAAEAEVLLCFGEVGPRDYSIDSVKQCIADVRTGIEIASSPFPEINRHGPAVTASDYGNNK
GLILGPSIPDWQDADLIHMPVEMFVDGARVGAGTMEAMLDGPFGSALFLIDTLRARGIAIAPGTWVSAGAITGIHEVRPG
QRAEALFDGKIRVGCTITSY

Sequences:

>Translated_260_residues
MAATSDPENVARAFIDARAGKTPLTVYPGAFPQTMAEAYAIQDRAIALDGRRVGGWKVGRIAPELVDRFGGNRLTGPIFA
DEIVDGAADPAMPVYADGFAAAEAEVLLCFGEVGPRDYSIDSVKQCIADVRTGIEIASSPFPEINRHGPAVTASDYGNNK
GLILGPSIPDWQDADLIHMPVEMFVDGARVGAGTMEAMLDGPFGSALFLIDTLRARGIAIAPGTWVSAGAITGIHEVRPG
QRAEALFDGKIRVGCTITSY
>Mature_259_residues
AATSDPENVARAFIDARAGKTPLTVYPGAFPQTMAEAYAIQDRAIALDGRRVGGWKVGRIAPELVDRFGGNRLTGPIFAD
EIVDGAADPAMPVYADGFAAAEAEVLLCFGEVGPRDYSIDSVKQCIADVRTGIEIASSPFPEINRHGPAVTASDYGNNKG
LILGPSIPDWQDADLIHMPVEMFVDGARVGAGTMEAMLDGPFGSALFLIDTLRARGIAIAPGTWVSAGAITGIHEVRPGQ
RAEALFDGKIRVGCTITSY

Specific function: Unknown

COG id: COG3971

COG function: function code Q; 2-keto-4-pentenoate hydratase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 4.2.1.80

Molecular weight: Translated: 27392; Mature: 27261

Theoretical pI: Translated: 4.49; Mature: 4.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAATSDPENVARAFIDARAGKTPLTVYPGAFPQTMAEAYAIQDRAIALDGRRVGGWKVGR
CCCCCCHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHCCCEEEECCCEECCEEHHH
IAPELVDRFGGNRLTGPIFADEIVDGAADPAMPVYADGFAAAEAEVLLCFGEVGPRDYSI
HHHHHHHHCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCEEEEEEECCCCCCCCH
DSVKQCIADVRTGIEIASSPFPEINRHGPAVTASDYGNNKGLILGPSIPDWQDADLIHMP
HHHHHHHHHHHCCCEECCCCCCCCCCCCCEEEECCCCCCCCEEECCCCCCCCCCCEEECC
VEMFVDGARVGAGTMEAMLDGPFGSALFLIDTLRARGIAIAPGTWVSAGAITGIHEVRPG
HHHHCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHCCEEECCCCCCCCCHHCCHHHCCCC
QRAEALFDGKIRVGCTITSY
CHHHHEECCEEEEEEEEECC
>Mature Secondary Structure 
AATSDPENVARAFIDARAGKTPLTVYPGAFPQTMAEAYAIQDRAIALDGRRVGGWKVGR
CCCCCHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHCCCEEEECCCEECCEEHHH
IAPELVDRFGGNRLTGPIFADEIVDGAADPAMPVYADGFAAAEAEVLLCFGEVGPRDYSI
HHHHHHHHCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCEEEEEEECCCCCCCCH
DSVKQCIADVRTGIEIASSPFPEINRHGPAVTASDYGNNKGLILGPSIPDWQDADLIHMP
HHHHHHHHHHHCCCEECCCCCCCCCCCCCEEEECCCCCCCCEEECCCCCCCCCCCEEECC
VEMFVDGARVGAGTMEAMLDGPFGSALFLIDTLRARGIAIAPGTWVSAGAITGIHEVRPG
HHHHCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHCCEEECCCCCCCCCHHCCHHHCCCC
QRAEALFDGKIRVGCTITSY
CHHHHEECCEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: 4-hydroxy-2-oxopentanoate

Specific reaction: 4-hydroxy-2-oxopentanoate = 2-oxopent-4-enoate + H2O

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA