| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103488503
Identifier: 103488503
GI number: 103488503
Start: 3172263
End: 3173300
Strand: Direct
Name: 103488503
Synonym: Sala_3027
Alternate gene names: NA
Gene position: 3172263-3173300 (Clockwise)
Preceding gene: 103488502
Following gene: 103488504
Centisome position: 94.83
GC content: 68.79
Gene sequence:
>1038_bases ATGACCCGTTCCGTCCGACGGCCCATCCTTGCGGCGCTGCTCGCCGCGGCCGCGCCGCTGCTGCTCGGCGCAACGCCTTC TCCCGCGACGCCGCCTTCTCCCGCGGCGACGCCCGGCCCGGCGGCCGAAACCGGCGCGCCGCCGGTCGGGGTCGTGCCTT TCATCGAACCCTTCGACCTCGACGCGACGCGGCGCATGGCGGTTCAGGTCATGATCGACGGCAAGGGCCCCTTTTCCTTT CTCGTCGACACCGGCGCCGAACGCACGGTGATCGCGCGCGAACTCGCCGACCGGCTGGGGCTTGTCGAGGGCGAAAAGTT GCGGATGGCGACGATCGGCGGATCGGCGACGGTGCCGAGCTATCATGTCGCGGCGCTCCAGATGACCAGGCTGCATCTGG CCAAGGTCAATGCCCCGGCGTTTCACGGCCGCCATATCGGCGCGGCGGGGCTGATCGGCGTCGATATGCTCGAGGAACGA CGCGTGCTCATCGATTTCCGCGACGAGACGATGGAGATATTGGAAACGCGCAAGCGCGCGCGGCCCGTGATCCGCGACGA TGACGCCATCGTCGTCACGGCGCGCAATTCGGCGGGGCGGCTGATCCTGTCCGACGCGCGGCTGAACGGCCGGCGCATCG ACGTCATCGTCGACACCGGCGCCCAAACCAGCGTCGGCAACCTCGCTTTGCAGCGGCTGGTGGCCGAAAAGCGCGCGAAC CGGCTGCCCTTCCTGCCGACGACCCTCGCCGCGGTGACAGGTGAGGACGTGCAGGCGACGCGCACCGCGATCAAGCGCAT CGTCATCAACGGCATGGACATCAACGATCTTCCCGTCAGCTTCGCCGACAGTCAGGCGTTCCGCGCGCTCGGGCTCGATG AGCGCCCGGCGTTGCTCCTCGGCATGGACAGCCTGTCGCTGTTCGACCGGATCGAGATCGACTTTCCGAACAAGCGCGTC GTCTTCGACCTGCCCGAACGCGCGCACCGCAATGCGGGGCAGCGCTTCGCGGCGAATGGGGGCGCGTTCGGGGGGTAG
Upstream 100 bases:
>100_bases ATGCGGGCGGATTGACGCGCCGGAGACGCCGGGCGTTTCGCTTGCCGACGACCGCGATGAGGCGTAGGCTGCGACAAAAT ATGGAAAGAGGATGCCAGCG
Downstream 100 bases:
>100_bases TCGCTTGCCGTGGCGTGGGGGCATTGCCATAGGAAGCGAATGTCCGCCGCCGCGCCCTTCGACTTTGCGGGCCAGCATTT TCAGATGCTGGCCGAAAACG
Product: hypothetical protein
Products: NA
Alternate protein names: Peptidase Aspartic
Number of amino acids: Translated: 345; Mature: 344
Protein sequence:
>345_residues MTRSVRRPILAALLAAAAPLLLGATPSPATPPSPAATPGPAAETGAPPVGVVPFIEPFDLDATRRMAVQVMIDGKGPFSF LVDTGAERTVIARELADRLGLVEGEKLRMATIGGSATVPSYHVAALQMTRLHLAKVNAPAFHGRHIGAAGLIGVDMLEER RVLIDFRDETMEILETRKRARPVIRDDDAIVVTARNSAGRLILSDARLNGRRIDVIVDTGAQTSVGNLALQRLVAEKRAN RLPFLPTTLAAVTGEDVQATRTAIKRIVINGMDINDLPVSFADSQAFRALGLDERPALLLGMDSLSLFDRIEIDFPNKRV VFDLPERAHRNAGQRFAANGGAFGG
Sequences:
>Translated_345_residues MTRSVRRPILAALLAAAAPLLLGATPSPATPPSPAATPGPAAETGAPPVGVVPFIEPFDLDATRRMAVQVMIDGKGPFSF LVDTGAERTVIARELADRLGLVEGEKLRMATIGGSATVPSYHVAALQMTRLHLAKVNAPAFHGRHIGAAGLIGVDMLEER RVLIDFRDETMEILETRKRARPVIRDDDAIVVTARNSAGRLILSDARLNGRRIDVIVDTGAQTSVGNLALQRLVAEKRAN RLPFLPTTLAAVTGEDVQATRTAIKRIVINGMDINDLPVSFADSQAFRALGLDERPALLLGMDSLSLFDRIEIDFPNKRV VFDLPERAHRNAGQRFAANGGAFGG >Mature_344_residues TRSVRRPILAALLAAAAPLLLGATPSPATPPSPAATPGPAAETGAPPVGVVPFIEPFDLDATRRMAVQVMIDGKGPFSFL VDTGAERTVIARELADRLGLVEGEKLRMATIGGSATVPSYHVAALQMTRLHLAKVNAPAFHGRHIGAAGLIGVDMLEERR VLIDFRDETMEILETRKRARPVIRDDDAIVVTARNSAGRLILSDARLNGRRIDVIVDTGAQTSVGNLALQRLVAEKRANR LPFLPTTLAAVTGEDVQATRTAIKRIVINGMDINDLPVSFADSQAFRALGLDERPALLLGMDSLSLFDRIEIDFPNKRVV FDLPERAHRNAGQRFAANGGAFGG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36919; Mature: 36788
Theoretical pI: Translated: 10.17; Mature: 10.17
Prosite motif: PS00141 ASP_PROTEASE ; PS50175 ASP_PROT_RETROV
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRSVRRPILAALLAAAAPLLLGATPSPATPPSPAATPGPAAETGAPPVGVVPFIEPFDL CCCHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC DATRRMAVQVMIDGKGPFSFLVDTGAERTVIARELADRLGLVEGEKLRMATIGGSATVPS CCCCEEEEEEEEECCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCC YHVAALQMTRLHLAKVNAPAFHGRHIGAAGLIGVDMLEERRVLIDFRDETMEILETRKRA HHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEECHHHHHHHHHHHHC RPVIRDDDAIVVTARNSAGRLILSDARLNGRRIDVIVDTGAQTSVGNLALQRLVAEKRAN CCCEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHC RLPFLPTTLAAVTGEDVQATRTAIKRIVINGMDINDLPVSFADSQAFRALGLDERPALLL CCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCCCEEEE GMDSLSLFDRIEIDFPNKRVVFDLPERAHRNAGQRFAANGGAFGG ECCCHHHHHEEEEECCCCEEEEECCHHHHHCCCCEEECCCCCCCC >Mature Secondary Structure TRSVRRPILAALLAAAAPLLLGATPSPATPPSPAATPGPAAETGAPPVGVVPFIEPFDL CCHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC DATRRMAVQVMIDGKGPFSFLVDTGAERTVIARELADRLGLVEGEKLRMATIGGSATVPS CCCCEEEEEEEEECCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCC YHVAALQMTRLHLAKVNAPAFHGRHIGAAGLIGVDMLEERRVLIDFRDETMEILETRKRA HHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEECHHHHHHHHHHHHC RPVIRDDDAIVVTARNSAGRLILSDARLNGRRIDVIVDTGAQTSVGNLALQRLVAEKRAN CCCEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHC RLPFLPTTLAAVTGEDVQATRTAIKRIVINGMDINDLPVSFADSQAFRALGLDERPALLL CCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCCCEEEE GMDSLSLFDRIEIDFPNKRVVFDLPERAHRNAGQRFAANGGAFGG ECCCHHHHHEEEEECCCCEEEEECCHHHHHCCCCEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA