Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103488503

Identifier: 103488503

GI number: 103488503

Start: 3172263

End: 3173300

Strand: Direct

Name: 103488503

Synonym: Sala_3027

Alternate gene names: NA

Gene position: 3172263-3173300 (Clockwise)

Preceding gene: 103488502

Following gene: 103488504

Centisome position: 94.83

GC content: 68.79

Gene sequence:

>1038_bases
ATGACCCGTTCCGTCCGACGGCCCATCCTTGCGGCGCTGCTCGCCGCGGCCGCGCCGCTGCTGCTCGGCGCAACGCCTTC
TCCCGCGACGCCGCCTTCTCCCGCGGCGACGCCCGGCCCGGCGGCCGAAACCGGCGCGCCGCCGGTCGGGGTCGTGCCTT
TCATCGAACCCTTCGACCTCGACGCGACGCGGCGCATGGCGGTTCAGGTCATGATCGACGGCAAGGGCCCCTTTTCCTTT
CTCGTCGACACCGGCGCCGAACGCACGGTGATCGCGCGCGAACTCGCCGACCGGCTGGGGCTTGTCGAGGGCGAAAAGTT
GCGGATGGCGACGATCGGCGGATCGGCGACGGTGCCGAGCTATCATGTCGCGGCGCTCCAGATGACCAGGCTGCATCTGG
CCAAGGTCAATGCCCCGGCGTTTCACGGCCGCCATATCGGCGCGGCGGGGCTGATCGGCGTCGATATGCTCGAGGAACGA
CGCGTGCTCATCGATTTCCGCGACGAGACGATGGAGATATTGGAAACGCGCAAGCGCGCGCGGCCCGTGATCCGCGACGA
TGACGCCATCGTCGTCACGGCGCGCAATTCGGCGGGGCGGCTGATCCTGTCCGACGCGCGGCTGAACGGCCGGCGCATCG
ACGTCATCGTCGACACCGGCGCCCAAACCAGCGTCGGCAACCTCGCTTTGCAGCGGCTGGTGGCCGAAAAGCGCGCGAAC
CGGCTGCCCTTCCTGCCGACGACCCTCGCCGCGGTGACAGGTGAGGACGTGCAGGCGACGCGCACCGCGATCAAGCGCAT
CGTCATCAACGGCATGGACATCAACGATCTTCCCGTCAGCTTCGCCGACAGTCAGGCGTTCCGCGCGCTCGGGCTCGATG
AGCGCCCGGCGTTGCTCCTCGGCATGGACAGCCTGTCGCTGTTCGACCGGATCGAGATCGACTTTCCGAACAAGCGCGTC
GTCTTCGACCTGCCCGAACGCGCGCACCGCAATGCGGGGCAGCGCTTCGCGGCGAATGGGGGCGCGTTCGGGGGGTAG

Upstream 100 bases:

>100_bases
ATGCGGGCGGATTGACGCGCCGGAGACGCCGGGCGTTTCGCTTGCCGACGACCGCGATGAGGCGTAGGCTGCGACAAAAT
ATGGAAAGAGGATGCCAGCG

Downstream 100 bases:

>100_bases
TCGCTTGCCGTGGCGTGGGGGCATTGCCATAGGAAGCGAATGTCCGCCGCCGCGCCCTTCGACTTTGCGGGCCAGCATTT
TCAGATGCTGGCCGAAAACG

Product: hypothetical protein

Products: NA

Alternate protein names: Peptidase Aspartic

Number of amino acids: Translated: 345; Mature: 344

Protein sequence:

>345_residues
MTRSVRRPILAALLAAAAPLLLGATPSPATPPSPAATPGPAAETGAPPVGVVPFIEPFDLDATRRMAVQVMIDGKGPFSF
LVDTGAERTVIARELADRLGLVEGEKLRMATIGGSATVPSYHVAALQMTRLHLAKVNAPAFHGRHIGAAGLIGVDMLEER
RVLIDFRDETMEILETRKRARPVIRDDDAIVVTARNSAGRLILSDARLNGRRIDVIVDTGAQTSVGNLALQRLVAEKRAN
RLPFLPTTLAAVTGEDVQATRTAIKRIVINGMDINDLPVSFADSQAFRALGLDERPALLLGMDSLSLFDRIEIDFPNKRV
VFDLPERAHRNAGQRFAANGGAFGG

Sequences:

>Translated_345_residues
MTRSVRRPILAALLAAAAPLLLGATPSPATPPSPAATPGPAAETGAPPVGVVPFIEPFDLDATRRMAVQVMIDGKGPFSF
LVDTGAERTVIARELADRLGLVEGEKLRMATIGGSATVPSYHVAALQMTRLHLAKVNAPAFHGRHIGAAGLIGVDMLEER
RVLIDFRDETMEILETRKRARPVIRDDDAIVVTARNSAGRLILSDARLNGRRIDVIVDTGAQTSVGNLALQRLVAEKRAN
RLPFLPTTLAAVTGEDVQATRTAIKRIVINGMDINDLPVSFADSQAFRALGLDERPALLLGMDSLSLFDRIEIDFPNKRV
VFDLPERAHRNAGQRFAANGGAFGG
>Mature_344_residues
TRSVRRPILAALLAAAAPLLLGATPSPATPPSPAATPGPAAETGAPPVGVVPFIEPFDLDATRRMAVQVMIDGKGPFSFL
VDTGAERTVIARELADRLGLVEGEKLRMATIGGSATVPSYHVAALQMTRLHLAKVNAPAFHGRHIGAAGLIGVDMLEERR
VLIDFRDETMEILETRKRARPVIRDDDAIVVTARNSAGRLILSDARLNGRRIDVIVDTGAQTSVGNLALQRLVAEKRANR
LPFLPTTLAAVTGEDVQATRTAIKRIVINGMDINDLPVSFADSQAFRALGLDERPALLLGMDSLSLFDRIEIDFPNKRVV
FDLPERAHRNAGQRFAANGGAFGG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 36919; Mature: 36788

Theoretical pI: Translated: 10.17; Mature: 10.17

Prosite motif: PS00141 ASP_PROTEASE ; PS50175 ASP_PROT_RETROV

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRSVRRPILAALLAAAAPLLLGATPSPATPPSPAATPGPAAETGAPPVGVVPFIEPFDL
CCCHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
DATRRMAVQVMIDGKGPFSFLVDTGAERTVIARELADRLGLVEGEKLRMATIGGSATVPS
CCCCEEEEEEEEECCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCC
YHVAALQMTRLHLAKVNAPAFHGRHIGAAGLIGVDMLEERRVLIDFRDETMEILETRKRA
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEECHHHHHHHHHHHHC
RPVIRDDDAIVVTARNSAGRLILSDARLNGRRIDVIVDTGAQTSVGNLALQRLVAEKRAN
CCCEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHC
RLPFLPTTLAAVTGEDVQATRTAIKRIVINGMDINDLPVSFADSQAFRALGLDERPALLL
CCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCCCEEEE
GMDSLSLFDRIEIDFPNKRVVFDLPERAHRNAGQRFAANGGAFGG
ECCCHHHHHEEEEECCCCEEEEECCHHHHHCCCCEEECCCCCCCC
>Mature Secondary Structure 
TRSVRRPILAALLAAAAPLLLGATPSPATPPSPAATPGPAAETGAPPVGVVPFIEPFDL
CCHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
DATRRMAVQVMIDGKGPFSFLVDTGAERTVIARELADRLGLVEGEKLRMATIGGSATVPS
CCCCEEEEEEEEECCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCC
YHVAALQMTRLHLAKVNAPAFHGRHIGAAGLIGVDMLEERRVLIDFRDETMEILETRKRA
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEECHHHHHHHHHHHHC
RPVIRDDDAIVVTARNSAGRLILSDARLNGRRIDVIVDTGAQTSVGNLALQRLVAEKRAN
CCCEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHC
RLPFLPTTLAAVTGEDVQATRTAIKRIVINGMDINDLPVSFADSQAFRALGLDERPALLL
CCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCCCEEEE
GMDSLSLFDRIEIDFPNKRVVFDLPERAHRNAGQRFAANGGAFGG
ECCCHHHHHEEEEECCCCEEEEECCHHHHHCCCCEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA