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The map label for this gene is lhr [C]

Identifier: 103488502

GI number: 103488502

Start: 3169757

End: 3172177

Strand: Direct

Name: lhr [C]

Synonym: Sala_3026

Alternate gene names: 103488502

Gene position: 3169757-3172177 (Clockwise)

Preceding gene: 103488501

Following gene: 103488503

Centisome position: 94.76

GC content: 68.9

Gene sequence:

>2421_bases
ATGCGCCTCCCCGCCCCCTTTGCCGACTGGTTCGCTGCGCGGGGATGGCGGCTGCGGCGCCATCAGGCCGATATGCTCGC
CGCGGCCGGGCGCGGCGATCATGCGCTGCTCGTCGCGGCGACGGGCGCGGGCAAGACGCTTGCGGGTTTCCTGCCCAGCC
TCGTCGATCTTGCGGCGCGTCCCTCCGACCGGCTGCACACCCTCTATGTCTCGCCGCTGAAGGCCCTGGCCGCCGACGTC
GAACGCAATCTGCTGGGGCCGATCGCCGACATGGGGCTGGGCATCAGCGTCGAGAGCCGCAGCGGCGACACGTCGTCCGA
CAAAAAGGCGCGCCAACGCAGCCGCCCGCCCAACATCTTGCTCACCACCCCCGAATCGCTCTCGCTTCTGCTGTCCTGGC
CTGACAGCTTCACCATGTTCGCCGACCTCAAGACCGTGGTGATCGACGAGATTCACGCCTTCGCGCCCGGCAAACGCGGC
GATTTGCTGAGCCTTGCGCTGGCGCGGCTCCAGAAAATCGCCCCGGATCTACGCCGCGTCGGCCTGTCGGCGACGATCGC
CGACCCCGATCAATATCGCGCCTGGCTCGCGCCCGACGCCGATGCGGACAAGGTCGCGCTCGTCGCGGGCGAGGCGGGCG
CCGATCCCGCCATTTCCATCCTGCTGCCCGAAGGCGCGGTGCCCTGGGCGGGCCATTCGGGGCGCTGGGCGGTGCATCAG
GTGATGGCGGAGGTCGCGAAAAACCGGACGACGATCATCTTCTGCAACACGCGCGGGCTTGCCGAGCTGATCTTTCAGGA
ATTGTGGAAGGTCAACGACCTGTCGCTTCCCATCGCGATCCACCACGGCAGCCTCGACCGCGAGGCGCGCCAGCGCGCGG
AAGCGGCGATGGCCGAAGGGCGGCTGCGCGCGCTCGTCGCGACCTCCAGCCTCGACCTGGGGCTCGACTGGGGCGATGTC
GATTGCGTGATCCAGATGGGCGCCCCCAAGGGGGCGTCGCGGCTGCTTCAGCGCATCGGCCGCGCCAATCACCGCCTCGA
CGAGCCGAGCCGCGCGCTGATCGTGCCCGGCAACCGCTTCGAATATCTCGAGGCGCGCGCAGCATTGGACGCGGTCGAGG
CCGGGGAGCGCGATGCCGACCGCTTCCGCCCCGGTGCGCTCGACGTGCTCGCGCAGCATGTGATGGCGCTCGCCTGCGCG
GCTCCGTTTCAGGAGGAGGCGCTGCTCGCCGAGATCCGCGGCGCGACGCCCTATCGCTGGATCGACGCCGACGTCTTTGC
CCGCCTCCTCGGCTTCGTGCGCGACGGCGGCTATGCGCTCAAAAGCTATGACCGCTTCCTCCGCCTCGCACCCGACGGGC
CCCAGGGCCCCGATCGCGGGTGGCGCATCGCGCACCCGCGGCTCGCGGCGCAGCACCGGCTGAACGCCGGGATCATCGTT
GACGCGCCGACGCTCGACGTGCGTTTCAAGAACGGCCGTCGGCTGGGTAGCGTCGAGGAATATTTCGCGAGCACTTTGGT
TCCGGGCGACACTTTTGCCTTCGCGGGCCTGAGCCTCGAGGTCGAGTCGATCCGCGACTCCGACCTGATCGTGCGCGCGA
CGACGCGGCCCGCGCGCATTCCGTCCTATATGGGCGCGCGCATGGCGCTCTCGACGCGGCTCGCCGACCGGGTGCGCGGC
TTCCTCGCCGACCCCGCGAGCTGGTCGCGCTTCCCCGCTGATGTGCGCTTCTGGCTGGAGATGCAGCAATTGCGCTCGGC
GCTGCCGCGTGCGGGCGAATTGCTCGTCGAAAGCTTCCCGCACGAAGGGCTGCACTATCTGGTCGCCTATCCGTTCGAGG
GATGGAATGCGCACCAGTCGCTGGGCATGCTCGTCACCAAGCGGATGGACCGTGCGGGGTTGCAGCCGATGGGGTTCGTC
GCCTCCGACTATGCGCTGGCGATCTGGTCGCTGCGGCCCGTGACCGCTCCCGAAAGGCTGTTCGACGCCGAAATCCTCTC
GGACGAGTTTGTCGAATGGGTCGAAAACTCGCATCTTCTGAAGCGCGCCTTTCGCGAGGTGGCGGTGATCGGCGGACTGA
TCGCGCGCCAGCATCCGGGCAAGCGCAAGACGGGCAAGCAGGTCACCTTTTCGACCGACCTCATCTTCGACGTGCTCCGC
AAATATGAGCCCGACCATCTGCTGCTGGAAGCGGCCTGGGCCGATGCGCGCGCGCGTTTGACCGACGTCGGGCGGCTGGG
CGACCTGCTCGACCGCGCGGCGGGGACGATGCGGCATGTGACGCTCGATCGCATCAGCCCGCTTGCAATTCCGGTGCTCG
TGCTGATCGGCCGCGAAAGCGTCGCGGCGTCCGACCTCGACGATGCGCTGCTCGGCGAGCTCGCCGACACGCTCGCCCGC
ACCGCGATGCGGGCGGATTGA

Upstream 100 bases:

>100_bases
GGCCCGATATCTTCGCCATTTCGACGCCTCGAACGGGTAATTAATGGGTCCTGACCCTAGCATGGTTGCCCGCGCGATGC
GCCTGTGACACGACCTCGCC

Downstream 100 bases:

>100_bases
CGCGCCGGAGACGCCGGGCGTTTCGCTTGCCGACGACCGCGATGAGGCGTAGGCTGCGACAAAATATGGAAAGAGGATGC
CAGCGATGACCCGTTCCGTC

Product: DEAD/DEAH box helicase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 806; Mature: 806

Protein sequence:

>806_residues
MRLPAPFADWFAARGWRLRRHQADMLAAAGRGDHALLVAATGAGKTLAGFLPSLVDLAARPSDRLHTLYVSPLKALAADV
ERNLLGPIADMGLGISVESRSGDTSSDKKARQRSRPPNILLTTPESLSLLLSWPDSFTMFADLKTVVIDEIHAFAPGKRG
DLLSLALARLQKIAPDLRRVGLSATIADPDQYRAWLAPDADADKVALVAGEAGADPAISILLPEGAVPWAGHSGRWAVHQ
VMAEVAKNRTTIIFCNTRGLAELIFQELWKVNDLSLPIAIHHGSLDREARQRAEAAMAEGRLRALVATSSLDLGLDWGDV
DCVIQMGAPKGASRLLQRIGRANHRLDEPSRALIVPGNRFEYLEARAALDAVEAGERDADRFRPGALDVLAQHVMALACA
APFQEEALLAEIRGATPYRWIDADVFARLLGFVRDGGYALKSYDRFLRLAPDGPQGPDRGWRIAHPRLAAQHRLNAGIIV
DAPTLDVRFKNGRRLGSVEEYFASTLVPGDTFAFAGLSLEVESIRDSDLIVRATTRPARIPSYMGARMALSTRLADRVRG
FLADPASWSRFPADVRFWLEMQQLRSALPRAGELLVESFPHEGLHYLVAYPFEGWNAHQSLGMLVTKRMDRAGLQPMGFV
ASDYALAIWSLRPVTAPERLFDAEILSDEFVEWVENSHLLKRAFREVAVIGGLIARQHPGKRKTGKQVTFSTDLIFDVLR
KYEPDHLLLEAAWADARARLTDVGRLGDLLDRAAGTMRHVTLDRISPLAIPVLVLIGRESVAASDLDDALLGELADTLAR
TAMRAD

Sequences:

>Translated_806_residues
MRLPAPFADWFAARGWRLRRHQADMLAAAGRGDHALLVAATGAGKTLAGFLPSLVDLAARPSDRLHTLYVSPLKALAADV
ERNLLGPIADMGLGISVESRSGDTSSDKKARQRSRPPNILLTTPESLSLLLSWPDSFTMFADLKTVVIDEIHAFAPGKRG
DLLSLALARLQKIAPDLRRVGLSATIADPDQYRAWLAPDADADKVALVAGEAGADPAISILLPEGAVPWAGHSGRWAVHQ
VMAEVAKNRTTIIFCNTRGLAELIFQELWKVNDLSLPIAIHHGSLDREARQRAEAAMAEGRLRALVATSSLDLGLDWGDV
DCVIQMGAPKGASRLLQRIGRANHRLDEPSRALIVPGNRFEYLEARAALDAVEAGERDADRFRPGALDVLAQHVMALACA
APFQEEALLAEIRGATPYRWIDADVFARLLGFVRDGGYALKSYDRFLRLAPDGPQGPDRGWRIAHPRLAAQHRLNAGIIV
DAPTLDVRFKNGRRLGSVEEYFASTLVPGDTFAFAGLSLEVESIRDSDLIVRATTRPARIPSYMGARMALSTRLADRVRG
FLADPASWSRFPADVRFWLEMQQLRSALPRAGELLVESFPHEGLHYLVAYPFEGWNAHQSLGMLVTKRMDRAGLQPMGFV
ASDYALAIWSLRPVTAPERLFDAEILSDEFVEWVENSHLLKRAFREVAVIGGLIARQHPGKRKTGKQVTFSTDLIFDVLR
KYEPDHLLLEAAWADARARLTDVGRLGDLLDRAAGTMRHVTLDRISPLAIPVLVLIGRESVAASDLDDALLGELADTLAR
TAMRAD
>Mature_806_residues
MRLPAPFADWFAARGWRLRRHQADMLAAAGRGDHALLVAATGAGKTLAGFLPSLVDLAARPSDRLHTLYVSPLKALAADV
ERNLLGPIADMGLGISVESRSGDTSSDKKARQRSRPPNILLTTPESLSLLLSWPDSFTMFADLKTVVIDEIHAFAPGKRG
DLLSLALARLQKIAPDLRRVGLSATIADPDQYRAWLAPDADADKVALVAGEAGADPAISILLPEGAVPWAGHSGRWAVHQ
VMAEVAKNRTTIIFCNTRGLAELIFQELWKVNDLSLPIAIHHGSLDREARQRAEAAMAEGRLRALVATSSLDLGLDWGDV
DCVIQMGAPKGASRLLQRIGRANHRLDEPSRALIVPGNRFEYLEARAALDAVEAGERDADRFRPGALDVLAQHVMALACA
APFQEEALLAEIRGATPYRWIDADVFARLLGFVRDGGYALKSYDRFLRLAPDGPQGPDRGWRIAHPRLAAQHRLNAGIIV
DAPTLDVRFKNGRRLGSVEEYFASTLVPGDTFAFAGLSLEVESIRDSDLIVRATTRPARIPSYMGARMALSTRLADRVRG
FLADPASWSRFPADVRFWLEMQQLRSALPRAGELLVESFPHEGLHYLVAYPFEGWNAHQSLGMLVTKRMDRAGLQPMGFV
ASDYALAIWSLRPVTAPERLFDAEILSDEFVEWVENSHLLKRAFREVAVIGGLIARQHPGKRKTGKQVTFSTDLIFDVLR
KYEPDHLLLEAAWADARARLTDVGRLGDLLDRAAGTMRHVTLDRISPLAIPVLVLIGRESVAASDLDDALLGELADTLAR
TAMRAD

Specific function: Unknown

COG id: COG1201

COG function: function code R; Lhr-like helicases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase C-terminal domain [H]

Homologues:

Organism=Homo sapiens, GI38569505, Length=313, Percent_Identity=24.9201277955272, Blast_Score=77, Evalue=7e-14,
Organism=Homo sapiens, GI38569503, Length=313, Percent_Identity=24.9201277955272, Blast_Score=77, Evalue=8e-14,
Organism=Escherichia coli, GI1787942, Length=879, Percent_Identity=28.5551763367463, Blast_Score=226, Evalue=5e-60,
Organism=Saccharomyces cerevisiae, GI6320497, Length=358, Percent_Identity=25.6983240223464, Blast_Score=105, Evalue=4e-23,
Organism=Saccharomyces cerevisiae, GI9755332, Length=377, Percent_Identity=24.4031830238727, Blast_Score=97, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014001
- InterPro:   IPR013701
- InterPro:   IPR011545
- InterPro:   IPR001650
- InterPro:   IPR014021
- InterPro:   IPR017170 [H]

Pfam domain/function: PF00270 DEAD; PF08494 DEAD_assoc; PF00271 Helicase_C [H]

EC number: 3.6.1.-

Molecular weight: Translated: 88308; Mature: 88308

Theoretical pI: Translated: 7.20; Mature: 7.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLPAPFADWFAARGWRLRRHQADMLAAAGRGDHALLVAATGAGKTLAGFLPSLVDLAAR
CCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCC
PSDRLHTLYVSPLKALAADVERNLLGPIADMGLGISVESRSGDTSSDKKARQRSRPPNIL
CCCCEEEEEHHHHHHHHHHHHHHHHCHHHHCCCCEEEECCCCCCCCHHHHHHHCCCCCEE
LTTPESLSLLLSWPDSFTMFADLKTVVIDEIHAFAPGKRGDLLSLALARLQKIAPDLRRV
EECCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCHHHHHC
GLSATIADPDQYRAWLAPDADADKVALVAGEAGADPAISILLPEGAVPWAGHSGRWAVHQ
CCEEEECCHHHCEEEECCCCCCCCEEEEECCCCCCCEEEEEECCCCCCCCCCCCCHHHHH
VMAEVAKNRTTIIFCNTRGLAELIFQELWKVNDLSLPIAIHHGSLDREARQRAEAAMAEG
HHHHHHCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHC
RLRALVATSSLDLGLDWGDVDCVIQMGAPKGASRLLQRIGRANHRLDEPSRALIVPGNRF
CEEEEEEECCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCEEEECCCCH
EYLEARAALDAVEAGERDADRFRPGALDVLAQHVMALACAAPFQEEALLAEIRGATPYRW
HHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCEE
IDADVFARLLGFVRDGGYALKSYDRFLRLAPDGPQGPDRGWRIAHPRLAAQHRLNAGIIV
ECHHHHHHHHHHHHCCCHHHHHHHHHEEECCCCCCCCCCCCEECCCHHHHHHCCCCCEEE
DAPTLDVRFKNGRRLGSVEEYFASTLVPGDTFAFAGLSLEVESIRDSDLIVRATTRPARI
ECCEEEEEECCCCCCCHHHHHHHHHCCCCCCCEECCCEEEEECCCCCCEEEEECCCCCCC
PSYMGARMALSTRLADRVRGFLADPASWSRFPADVRFWLEMQQLRSALPRAGELLVESFP
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCC
HEGLHYLVAYPFEGWNAHQSLGMLVTKRMDRAGLQPMGFVASDYALAIWSLRPVTAPERL
CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHCCCEEEEEECCCCCCHHHH
FDAEILSDEFVEWVENSHLLKRAFREVAVIGGLIARQHPGKRKTGKQVTFSTDLIFDVLR
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEHHHHHHHHHH
KYEPDHLLLEAAWADARARLTDVGRLGDLLDRAAGTMRHVTLDRISPLAIPVLVLIGRES
HCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHCCHHHHHHHHHCCCCH
VAASDLDDALLGELADTLARTAMRAD
HHHCCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRLPAPFADWFAARGWRLRRHQADMLAAAGRGDHALLVAATGAGKTLAGFLPSLVDLAAR
CCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCC
PSDRLHTLYVSPLKALAADVERNLLGPIADMGLGISVESRSGDTSSDKKARQRSRPPNIL
CCCCEEEEEHHHHHHHHHHHHHHHHCHHHHCCCCEEEECCCCCCCCHHHHHHHCCCCCEE
LTTPESLSLLLSWPDSFTMFADLKTVVIDEIHAFAPGKRGDLLSLALARLQKIAPDLRRV
EECCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCHHHHHC
GLSATIADPDQYRAWLAPDADADKVALVAGEAGADPAISILLPEGAVPWAGHSGRWAVHQ
CCEEEECCHHHCEEEECCCCCCCCEEEEECCCCCCCEEEEEECCCCCCCCCCCCCHHHHH
VMAEVAKNRTTIIFCNTRGLAELIFQELWKVNDLSLPIAIHHGSLDREARQRAEAAMAEG
HHHHHHCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHC
RLRALVATSSLDLGLDWGDVDCVIQMGAPKGASRLLQRIGRANHRLDEPSRALIVPGNRF
CEEEEEEECCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCEEEECCCCH
EYLEARAALDAVEAGERDADRFRPGALDVLAQHVMALACAAPFQEEALLAEIRGATPYRW
HHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCEE
IDADVFARLLGFVRDGGYALKSYDRFLRLAPDGPQGPDRGWRIAHPRLAAQHRLNAGIIV
ECHHHHHHHHHHHHCCCHHHHHHHHHEEECCCCCCCCCCCCEECCCHHHHHHCCCCCEEE
DAPTLDVRFKNGRRLGSVEEYFASTLVPGDTFAFAGLSLEVESIRDSDLIVRATTRPARI
ECCEEEEEECCCCCCCHHHHHHHHHCCCCCCCEECCCEEEEECCCCCCEEEEECCCCCCC
PSYMGARMALSTRLADRVRGFLADPASWSRFPADVRFWLEMQQLRSALPRAGELLVESFP
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCC
HEGLHYLVAYPFEGWNAHQSLGMLVTKRMDRAGLQPMGFVASDYALAIWSLRPVTAPERL
CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHCCCEEEEEECCCCCCHHHH
FDAEILSDEFVEWVENSHLLKRAFREVAVIGGLIARQHPGKRKTGKQVTFSTDLIFDVLR
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEHHHHHHHHHH
KYEPDHLLLEAAWADARARLTDVGRLGDLLDRAAGTMRHVTLDRISPLAIPVLVLIGRES
HCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHCCHHHHHHHHHCCCCH
VAASDLDDALLGELADTLARTAMRAD
HHHCCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on acid anhydrides [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]