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The map label for this gene is yggS [C]

Identifier: 103488501

GI number: 103488501

Start: 3168748

End: 3169410

Strand: Direct

Name: yggS [C]

Synonym: Sala_3024

Alternate gene names: 103488501

Gene position: 3168748-3169410 (Clockwise)

Preceding gene: 103488499

Following gene: 103488502

Centisome position: 94.73

GC content: 67.42

Gene sequence:

>663_bases
ATGAACGAAGCAGCAGACCGGCTGGCCGAGGTGCAGGGCCATATCGCCGACGCGGCGCGCCGTGCGCGGCGCCGGCCCGA
CGAGATTTGCCTGATCGCGGTGTCGAAGACGCACGATGCCGACGCCATCCGTCCACTGATCGTCGCGGGCCAGCGCCATT
TCGGCGAGAATCGCGTGCAGGAAGCCACGGCGAAATGGCCCGCGCTGCGCGCCGAACTGCCCGACGTCGTGTTGCACCTG
ATCGGCCGGCTGCAATCGAACAAGGCCGAAGAGGCGGTCGCCTTGTTCGACGCGATCCACTCGGTCGACCGCTCGTCGCT
CGTGCAGGCGCTCGCCAAAGCCTGCGAAAAGACGGGCAAGCGGCCGCAACTGTTCGTGCAGGTCAATATCGGCAACGAAG
AGCAAAAGGGCGGCTGCCCGGTCGCCGACCTTCCCGCATTATTGGCCGAAGCAACGGCGGCAGGTCTCCAGATCGCCGGC
CTGATGGCGATCCCGCCCGCGGATATCGAACCCGCGCCCTTCTTTGCTCTGCTCGACGAACTCGCCGCGCGCCACGCGCT
GCCGCTCCGCTCGATGGGGATGAGCGGCGATTATGAAACCGCGGTGATGCTGGGCGCGACGCATGTGCGCGTTGGCACGG
CGCTGTTCGGCGCGCGGGACTGA

Upstream 100 bases:

>100_bases
CAGACGCCCGGAACTTTGGAGGGTGGAGGGTGGCGCGCGCGCATCGCCCTTCCTATAGGCGCGTCGCGAGCGCACGCAAC
GCGCCGATGGGAATGAGACG

Downstream 100 bases:

>100_bases
CCGATTAGCCGGGACCGGTTGCGACCAGAAACTGCCCTAGGGTCAGGACCCATTAATTACCCGTTCGAGGTTTGAGGCGA
TTTTGCTCGGGGCGAGGAGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MNEAADRLAEVQGHIADAARRARRRPDEICLIAVSKTHDADAIRPLIVAGQRHFGENRVQEATAKWPALRAELPDVVLHL
IGRLQSNKAEEAVALFDAIHSVDRSSLVQALAKACEKTGKRPQLFVQVNIGNEEQKGGCPVADLPALLAEATAAGLQIAG
LMAIPPADIEPAPFFALLDELAARHALPLRSMGMSGDYETAVMLGATHVRVGTALFGARD

Sequences:

>Translated_220_residues
MNEAADRLAEVQGHIADAARRARRRPDEICLIAVSKTHDADAIRPLIVAGQRHFGENRVQEATAKWPALRAELPDVVLHL
IGRLQSNKAEEAVALFDAIHSVDRSSLVQALAKACEKTGKRPQLFVQVNIGNEEQKGGCPVADLPALLAEATAAGLQIAG
LMAIPPADIEPAPFFALLDELAARHALPLRSMGMSGDYETAVMLGATHVRVGTALFGARD
>Mature_220_residues
MNEAADRLAEVQGHIADAARRARRRPDEICLIAVSKTHDADAIRPLIVAGQRHFGENRVQEATAKWPALRAELPDVVLHL
IGRLQSNKAEEAVALFDAIHSVDRSSLVQALAKACEKTGKRPQLFVQVNIGNEEQKGGCPVADLPALLAEATAAGLQIAG
LMAIPPADIEPAPFFALLDELAARHALPLRSMGMSGDYETAVMLGATHVRVGTALFGARD

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=223, Percent_Identity=34.9775784753363, Blast_Score=103, Evalue=1e-22,
Organism=Escherichia coli, GI1789321, Length=236, Percent_Identity=40.6779661016949, Blast_Score=133, Evalue=1e-32,
Organism=Caenorhabditis elegans, GI17533025, Length=225, Percent_Identity=33.7777777777778, Blast_Score=99, Evalue=2e-21,
Organism=Saccharomyces cerevisiae, GI6319435, Length=212, Percent_Identity=31.6037735849057, Blast_Score=80, Evalue=2e-16,
Organism=Drosophila melanogaster, GI45550861, Length=223, Percent_Identity=34.5291479820628, Blast_Score=109, Evalue=2e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 23514; Mature: 23514

Theoretical pI: Translated: 6.40; Mature: 6.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNEAADRLAEVQGHIADAARRARRRPDEICLIAVSKTHDADAIRPLIVAGQRHFGENRVQ
CCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHCHHHCCHHHHH
EATAKWPALRAELPDVVLHLIGRLQSNKAEEAVALFDAIHSVDRSSLVQALAKACEKTGK
HHHHHCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCC
RPQLFVQVNIGNEEQKGGCPVADLPALLAEATAAGLQIAGLMAIPPADIEPAPFFALLDE
CCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCHHHHHHHH
LAARHALPLRSMGMSGDYETAVMLGATHVRVGTALFGARD
HHHHHCCCHHHCCCCCCCCHHHEECCHHHHHHHHHHCCCC
>Mature Secondary Structure
MNEAADRLAEVQGHIADAARRARRRPDEICLIAVSKTHDADAIRPLIVAGQRHFGENRVQ
CCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHCHHHCCHHHHH
EATAKWPALRAELPDVVLHLIGRLQSNKAEEAVALFDAIHSVDRSSLVQALAKACEKTGK
HHHHHCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCC
RPQLFVQVNIGNEEQKGGCPVADLPALLAEATAAGLQIAGLMAIPPADIEPAPFFALLDE
CCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCHHHHHHHH
LAARHALPLRSMGMSGDYETAVMLGATHVRVGTALFGARD
HHHHHCCCHHHCCCCCCCCHHHEECCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]