| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103488482
Identifier: 103488482
GI number: 103488482
Start: 3147394
End: 3148545
Strand: Reverse
Name: 103488482
Synonym: Sala_3005
Alternate gene names: NA
Gene position: 3148545-3147394 (Counterclockwise)
Preceding gene: 103488483
Following gene: 103488479
Centisome position: 94.12
GC content: 66.84
Gene sequence:
>1152_bases ATGGCCGAGGCCGACCCACCGGCGCGGACCATCGCGCTCGGCAGCGGCGTCGCCGCGGTCGACGCGGCGGCGTGGGACGG CTTGCACAATGGCGGCAATCCGTTCGTCGACCACGCCTTCCTGTCGCTGCTCGAAGAATCGGGCAGCGTCGGACCGGGCA CCGGGTGGCAGGCCGCGCCGCTGCTTGTCGAGGACGCGACCGGTTCGCTGGTCGCAGCCGCGCCCGCCTATCTCAAATCG CACAGCCAGGGCGAATATGTGTTCGACCATGGCTGGGCCGACGCCTGGGCGCGCGCGGGCGGCGATTATTATCCGAAGCT GCAGATCGCGGTGCCCTTCACCCCCGTGCCGGGACCGCGGCTGCTTGCGCGGGACAGCGGCGACGCACGGCTGCTGCTCC GCGCCGCCGAAGCCGTCGTGCGGCAGAATGGCCTGTCGTCGGCGCACGCGACCTTTGTGGCGCCCGACCAGATGCCCTTG TTCGAGGAGGCGGGCTGGCTCATCCGCCGCGACATCCAGTTTCACTTCGCGAATCGGGGCTATGCCAGCTTCGACGATTT CCTCGCCTCGCTCAATTCGCAGAAGCGCAAGCAGTTGCGCAAGGAAAGGTTCCGCGCGGCCCAGGGCCTGCGGATCGAGG AACTCACCGGCGAGACGATCCGCCCCGAACATTGGGATGCTATGTGGCTTTTCTATCAGGACACCGGCGCGCGCAAATGG GGGCATCCCTATCTGACGCGCGCGGCCTTCGACCTGATGGGCGCGGCGATGGCGGACAAGATCATCCTGCTGATCGCTTA TGATGCCGACGAGCGACCGGTCGCCGGGGCACTGCACTTCCTTGGCGCCGATACGCTCTACGGCCGCTATTGGGGGTGCC TCGCCGACATCCCCTATCTGCATTTCGAACTATGCTATTATCGCGCGATCGACATTGCGATCGAACGCGGGCTGAAACGG GTCGAGGCGGGCGCGCAGGGCGGGCACAAGCTCGCGCGCGGCTATGGCCCTGTCGCGACCTGGTCGGCGCATTTCATCGC CGATCCGGGCTTTCGCCGTGCAGTTGCCGATTATCTCGATCGGGAACGCCGTGCCGAAGCGGCGGAAATGGAGTGGCTGG AGGGGCATATGCCCTTCAGGCGGAAGAGCTGA
Upstream 100 bases:
>100_bases AGTCGGCCGCCACGCGCGCGCCGCGGTCGGCGTCGCGGTGCTGCCGCTCGGCGCCGCGGTCGAGGCCGACGCGATCGTCG CGGTGCGCCCGGCCTGAGCG
Downstream 100 bases:
>100_bases GCCAGTTGCCTGTTCCGTTCGTGTCGAGCGAAGTCGAGATGCGAACGGGAAGAGGCGCGATCCTGTTTACGCCACGAACC GCCGCGCGGCCGGACGGCGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 383; Mature: 382
Protein sequence:
>383_residues MAEADPPARTIALGSGVAAVDAAAWDGLHNGGNPFVDHAFLSLLEESGSVGPGTGWQAAPLLVEDATGSLVAAAPAYLKS HSQGEYVFDHGWADAWARAGGDYYPKLQIAVPFTPVPGPRLLARDSGDARLLLRAAEAVVRQNGLSSAHATFVAPDQMPL FEEAGWLIRRDIQFHFANRGYASFDDFLASLNSQKRKQLRKERFRAAQGLRIEELTGETIRPEHWDAMWLFYQDTGARKW GHPYLTRAAFDLMGAAMADKIILLIAYDADERPVAGALHFLGADTLYGRYWGCLADIPYLHFELCYYRAIDIAIERGLKR VEAGAQGGHKLARGYGPVATWSAHFIADPGFRRAVADYLDRERRAEAAEMEWLEGHMPFRRKS
Sequences:
>Translated_383_residues MAEADPPARTIALGSGVAAVDAAAWDGLHNGGNPFVDHAFLSLLEESGSVGPGTGWQAAPLLVEDATGSLVAAAPAYLKS HSQGEYVFDHGWADAWARAGGDYYPKLQIAVPFTPVPGPRLLARDSGDARLLLRAAEAVVRQNGLSSAHATFVAPDQMPL FEEAGWLIRRDIQFHFANRGYASFDDFLASLNSQKRKQLRKERFRAAQGLRIEELTGETIRPEHWDAMWLFYQDTGARKW GHPYLTRAAFDLMGAAMADKIILLIAYDADERPVAGALHFLGADTLYGRYWGCLADIPYLHFELCYYRAIDIAIERGLKR VEAGAQGGHKLARGYGPVATWSAHFIADPGFRRAVADYLDRERRAEAAEMEWLEGHMPFRRKS >Mature_382_residues AEADPPARTIALGSGVAAVDAAAWDGLHNGGNPFVDHAFLSLLEESGSVGPGTGWQAAPLLVEDATGSLVAAAPAYLKSH SQGEYVFDHGWADAWARAGGDYYPKLQIAVPFTPVPGPRLLARDSGDARLLLRAAEAVVRQNGLSSAHATFVAPDQMPLF EEAGWLIRRDIQFHFANRGYASFDDFLASLNSQKRKQLRKERFRAAQGLRIEELTGETIRPEHWDAMWLFYQDTGARKWG HPYLTRAAFDLMGAAMADKIILLIAYDADERPVAGALHFLGADTLYGRYWGCLADIPYLHFELCYYRAIDIAIERGLKRV EAGAQGGHKLARGYGPVATWSAHFIADPGFRRAVADYLDRERRAEAAEMEWLEGHMPFRRKS
Specific function: Unknown
COG id: COG3146
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42299; Mature: 42168
Theoretical pI: Translated: 6.45; Mature: 6.45
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAEADPPARTIALGSGVAAVDAAAWDGLHNGGNPFVDHAFLSLLEESGSVGPGTGWQAAP CCCCCCCCEEEEECCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC LLVEDATGSLVAAAPAYLKSHSQGEYVFDHGWADAWARAGGDYYPKLQIAVPFTPVPGPR EEEECCCCCEEECCHHHHHCCCCCCEEEECCCHHHHHHCCCCCCCEEEEEECCCCCCCCC LLARDSGDARLLLRAAEAVVRQNGLSSAHATFVAPDQMPLFEEAGWLIRRDIQFHFANRG EEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHCCCEEEEEEEEEECCCC YASFDDFLASLNSQKRKQLRKERFRAAQGLRIEELTGETIRPEHWDAMWLFYQDTGARKW CCHHHHHHHHHCHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCEEEEEEECCCCCCC GHPYLTRAAFDLMGAAMADKIILLIAYDADERPVAGALHFLGADTLYGRYWGCLADIPYL CCHHHHHHHHHHHHHHHHCEEEEEEEECCCCCCHHHHHHHHCCHHHHHHHHHHHHCCHHH HFELCYYRAIDIAIERGLKRVEAGAQGGHKLARGYGPVATWSAHFIADPGFRRAVADYLD HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHCCCCEECCCCHHHHHHHHHH RERRAEAAEMEWLEGHMPFRRKS HHHHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure AEADPPARTIALGSGVAAVDAAAWDGLHNGGNPFVDHAFLSLLEESGSVGPGTGWQAAP CCCCCCCEEEEECCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC LLVEDATGSLVAAAPAYLKSHSQGEYVFDHGWADAWARAGGDYYPKLQIAVPFTPVPGPR EEEECCCCCEEECCHHHHHCCCCCCEEEECCCHHHHHHCCCCCCCEEEEEECCCCCCCCC LLARDSGDARLLLRAAEAVVRQNGLSSAHATFVAPDQMPLFEEAGWLIRRDIQFHFANRG EEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHCCCEEEEEEEEEECCCC YASFDDFLASLNSQKRKQLRKERFRAAQGLRIEELTGETIRPEHWDAMWLFYQDTGARKW CCHHHHHHHHHCHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCEEEEEEECCCCCCC GHPYLTRAAFDLMGAAMADKIILLIAYDADERPVAGALHFLGADTLYGRYWGCLADIPYL CCHHHHHHHHHHHHHHHHCEEEEEEEECCCCCCHHHHHHHHCCHHHHHHHHHHHHCCHHH HFELCYYRAIDIAIERGLKRVEAGAQGGHKLARGYGPVATWSAHFIADPGFRRAVADYLD HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHCCCCEECCCCHHHHHHHHHH RERRAEAAEMEWLEGHMPFRRKS HHHHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA