Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

Click here to switch to the map view.

The map label for this gene is 103488479

Identifier: 103488479

GI number: 103488479

Start: 3145125

End: 3146006

Strand: Reverse

Name: 103488479

Synonym: Sala_3002

Alternate gene names: NA

Gene position: 3146006-3145125 (Counterclockwise)

Preceding gene: 103488482

Following gene: 103488478

Centisome position: 94.05

GC content: 65.42

Gene sequence:

>882_bases
ATGATATCATTTCGCGCGTCGGTCGCCCATGCCGCGCCAACAGGAAAATCGCAACGCCCCATGACGAACTCCGCGACGAC
CCCCGCTCCGCACCGCATCATCTTTGCCAATGAAAAGGGCGGAACGGGCAAATCGACCTGCGCCGTGCATTTCGCGGTTG
CGCTGGCAAGCCAGGGCTGGCGCGTCGCGGGGATCGACCTCGACCCCCGCCAGCGCACCTTTCATCGCTATCTCGAGAAT
CGCACCAACACCGCACGACGGCGCGACATCGAATTGCCGACGCCGCAGTTCGAGGTGTTCGAGGGATCGACGATCGAGGA
GCTCGACACGCAGGTGGCGCGGCTGACCGAAGGCGCCGATTATTTCATCGCCGACACGCCGGGCCGCGACGATGTCTTCG
CCCGCCACCTTGCAACCACCGCCGACACGCTCGTCACGCCGATCAACGACAGCTTCATCGATTTCGACCTGATCGGCCAG
GTCGATCCCGAGACATTTCAGGTGACGCGCCCCAGCTTTTATTCGGAGCTGATCTGGGACACGCGCAAGGCGCGCGCCAA
GAGCGACGGGCGCACGATCGACTGGATCATCCTGCGCAACCGCCTCCAGCATGTCGACGCGCACAATATGCGGCGCGTCG
GCGAGGCGCTGGGCCAGTTGTCGCGCCGCGTCGGCTTTCGCGTCATCCCCGGCCTTGGCGAGCGCGTCATCTATCGCGAA
CTCTTCCCGGCCGGGCTTACGCTCCTCGACAAGGCGCATCTGGGCGGCATGGGAATCGGCCATGTCGTCGCGCGGCAGGA
ATTGCGCGAGGCGATGGGCGGCCTCAACCTGCCCGCGCGCGAGCGACTGCATCCCGACGGCGACCTGTTTGCTGCCGCCT
GA

Upstream 100 bases:

>100_bases
CGATGCTCTTGCCGCCCTGTTTCAGTGCCGTGACGGCACGGTGGAGCATCGCGATGTCACGGATGATTTGCACGGCCGGG
CGCCCTCCGATATTGGCGCG

Downstream 100 bases:

>100_bases
CCTGCTTCTCCCCCCAAGAGGATCGACGATGACCCATGATTTCCATCCGACGATGCTGCGCGAATATGACATTCGCGGCG
TCGTTGGCGATACGTTGTCC

Product: chromosome partitioning ATPase protein-like protein

Products: NA

Alternate protein names: Chromosome Partitioning Protein; ATPases Involved In Chromosome Partitioning-Like Protein; ATPase; Chromosome Partitioning Protein ParA; Chromosome Partitioning Protein-Like Protein; Chromosome Partitioning ATPase Protein-Like; ATPase MipZ Superfamily; Chromosome Partitioning Protein MipZ; Division Plane Positioning ATPase MipZ; Chromosome Partitioning ATPase; ATPase Involved In Chromosome Partitioning; ATPases Involved In Chromosome Partitioning-Like; Partition-Related Protein; ATPase Mipz; ParA-Like Protein

Number of amino acids: Translated: 293; Mature: 293

Protein sequence:

>293_residues
MISFRASVAHAAPTGKSQRPMTNSATTPAPHRIIFANEKGGTGKSTCAVHFAVALASQGWRVAGIDLDPRQRTFHRYLEN
RTNTARRRDIELPTPQFEVFEGSTIEELDTQVARLTEGADYFIADTPGRDDVFARHLATTADTLVTPINDSFIDFDLIGQ
VDPETFQVTRPSFYSELIWDTRKARAKSDGRTIDWIILRNRLQHVDAHNMRRVGEALGQLSRRVGFRVIPGLGERVIYRE
LFPAGLTLLDKAHLGGMGIGHVVARQELREAMGGLNLPARERLHPDGDLFAAA

Sequences:

>Translated_293_residues
MISFRASVAHAAPTGKSQRPMTNSATTPAPHRIIFANEKGGTGKSTCAVHFAVALASQGWRVAGIDLDPRQRTFHRYLEN
RTNTARRRDIELPTPQFEVFEGSTIEELDTQVARLTEGADYFIADTPGRDDVFARHLATTADTLVTPINDSFIDFDLIGQ
VDPETFQVTRPSFYSELIWDTRKARAKSDGRTIDWIILRNRLQHVDAHNMRRVGEALGQLSRRVGFRVIPGLGERVIYRE
LFPAGLTLLDKAHLGGMGIGHVVARQELREAMGGLNLPARERLHPDGDLFAAA
>Mature_293_residues
MISFRASVAHAAPTGKSQRPMTNSATTPAPHRIIFANEKGGTGKSTCAVHFAVALASQGWRVAGIDLDPRQRTFHRYLEN
RTNTARRRDIELPTPQFEVFEGSTIEELDTQVARLTEGADYFIADTPGRDDVFARHLATTADTLVTPINDSFIDFDLIGQ
VDPETFQVTRPSFYSELIWDTRKARAKSDGRTIDWIILRNRLQHVDAHNMRRVGEALGQLSRRVGFRVIPGLGERVIYRE
LFPAGLTLLDKAHLGGMGIGHVVARQELREAMGGLNLPARERLHPDGDLFAAA

Specific function: Unknown

COG id: COG1192

COG function: function code D; ATPases involved in chromosome partitioning

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 32578; Mature: 32578

Theoretical pI: Translated: 8.52; Mature: 8.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISFRASVAHAAPTGKSQRPMTNSATTPAPHRIIFANEKGGTGKSTCAVHFAVALASQGW
CCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCC
RVAGIDLDPRQRTFHRYLENRTNTARRRDIELPTPQFEVFEGSTIEELDTQVARLTEGAD
EEEECCCCHHHHHHHHHHHCCCCHHHHCCCCCCCCCEEEECCCCHHHHHHHHHHHHCCCC
YFIADTPGRDDVFARHLATTADTLVTPINDSFIDFDLIGQVDPETFQVTRPSFYSELIWD
EEEECCCCCHHHHHHHHHHHHHHHEECCCCCEECEEEECCCCCCEEEEECCHHHHHHHHH
TRKARAKSDGRTIDWIILRNRLQHVDAHNMRRVGEALGQLSRRVGFRVIPGLGERVIYRE
HHHHHHCCCCCEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCEECCCCCHHHHHHH
LFPAGLTLLDKAHLGGMGIGHVVARQELREAMGGLNLPARERLHPDGDLFAAA
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCEEECC
>Mature Secondary Structure
MISFRASVAHAAPTGKSQRPMTNSATTPAPHRIIFANEKGGTGKSTCAVHFAVALASQGW
CCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCC
RVAGIDLDPRQRTFHRYLENRTNTARRRDIELPTPQFEVFEGSTIEELDTQVARLTEGAD
EEEECCCCHHHHHHHHHHHCCCCHHHHCCCCCCCCCEEEECCCCHHHHHHHHHHHHCCCC
YFIADTPGRDDVFARHLATTADTLVTPINDSFIDFDLIGQVDPETFQVTRPSFYSELIWD
EEEECCCCCHHHHHHHHHHHHHHHEECCCCCEECEEEECCCCCCEEEEECCHHHHHHHHH
TRKARAKSDGRTIDWIILRNRLQHVDAHNMRRVGEALGQLSRRVGFRVIPGLGERVIYRE
HHHHHHCCCCCEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCEECCCCCHHHHHHH
LFPAGLTLLDKAHLGGMGIGHVVARQELREAMGGLNLPARERLHPDGDLFAAA
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA