| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103488466
Identifier: 103488466
GI number: 103488466
Start: 3131292
End: 3131771
Strand: Direct
Name: 103488466
Synonym: Sala_2989
Alternate gene names: NA
Gene position: 3131292-3131771 (Clockwise)
Preceding gene: 103488465
Following gene: 103488472
Centisome position: 93.61
GC content: 68.12
Gene sequence:
>480_bases ATGGCGCGTGACCCGCTGACCGCCGCGGACGTCGCGCGCGGCGTGTGTCGGCTGTTCGCACAACAGGGGCTGGTCGCGAT CCCCGAAGTCACGCTGCCCAATGGACGCCGCACCGACCTCACCGCGATCGACGCCAGGGGCCATATCACGATCGTCGAGA TCAAGGTCAGCCGCGCCGACCTCCACGGCGATGGCAAATGGCCCGACTATTGCGACTGGTGTGACCGTTTTTACTGGGCG CTCGCGGCAGGGCTCGACCCCGCGATCCTCGACACGCCCGATTATCGCCCCGAAACGTCCGGGCTGATCGTCGCCGACCG CTATGGCGCCGCGGTCGTGCGCGACGCCGCAAACTGCAACCTCGCACCGGCGCGCCGCAAGGCCGAGCTGCTGCGAATCG GACGCCTGGCGATGCGCCGGTCGATGATCGCCGCCGATCCCGAACTCGCGGCGGGTCAGATATACAGCACATCGCTCTAG
Upstream 100 bases:
>100_bases CGGCGGCGGCGGTTCGGGCGGCGGCGGCGCGCCGGGTGGCGGACGCCCGCCGTTCGACGATGATCTGGACGATGACGTCC CATTCTGACGATGAGGCCGC
Downstream 100 bases:
>100_bases GCGGCGCGCGCCTGCATCCGCGCGAGATAGCGCGCGAGAATGTCGATCTCCAGATTGACCGGTCGCCCCGCCGCCGCTTC GTCCAGCGTCGTCATCGCCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 159; Mature: 158
Protein sequence:
>159_residues MARDPLTAADVARGVCRLFAQQGLVAIPEVTLPNGRRTDLTAIDARGHITIVEIKVSRADLHGDGKWPDYCDWCDRFYWA LAAGLDPAILDTPDYRPETSGLIVADRYGAAVVRDAANCNLAPARRKAELLRIGRLAMRRSMIAADPELAAGQIYSTSL
Sequences:
>Translated_159_residues MARDPLTAADVARGVCRLFAQQGLVAIPEVTLPNGRRTDLTAIDARGHITIVEIKVSRADLHGDGKWPDYCDWCDRFYWA LAAGLDPAILDTPDYRPETSGLIVADRYGAAVVRDAANCNLAPARRKAELLRIGRLAMRRSMIAADPELAAGQIYSTSL >Mature_158_residues ARDPLTAADVARGVCRLFAQQGLVAIPEVTLPNGRRTDLTAIDARGHITIVEIKVSRADLHGDGKWPDYCDWCDRFYWAL AAGLDPAILDTPDYRPETSGLIVADRYGAAVVRDAANCNLAPARRKAELLRIGRLAMRRSMIAADPELAAGQIYSTSL
Specific function: Unknown
COG id: COG5321
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17334; Mature: 17203
Theoretical pI: Translated: 7.29; Mature: 7.29
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARDPLTAADVARGVCRLFAQQGLVAIPEVTLPNGRRTDLTAIDARGHITIVEIKVSRAD CCCCCCCHHHHHHHHHHHHHHCCCEECCCEECCCCCCCCEEEECCCCCEEEEEEEEEEEE LHGDGKWPDYCDWCDRFYWALAAGLDPAILDTPDYRPETSGLIVADRYGAAVVRDAANCN ECCCCCCCCHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCEEEECCCCCEEEECCCCCC LAPARRKAELLRIGRLAMRRSMIAADPELAAGQIYSTSL CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCC >Mature Secondary Structure ARDPLTAADVARGVCRLFAQQGLVAIPEVTLPNGRRTDLTAIDARGHITIVEIKVSRAD CCCCCCHHHHHHHHHHHHHHCCCEECCCEECCCCCCCCEEEECCCCCEEEEEEEEEEEE LHGDGKWPDYCDWCDRFYWALAAGLDPAILDTPDYRPETSGLIVADRYGAAVVRDAANCN ECCCCCCCCHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCEEEECCCCCEEEECCCCCC LAPARRKAELLRIGRLAMRRSMIAADPELAAGQIYSTSL CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA