| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is feoB [H]
Identifier: 103488464
GI number: 103488464
Start: 3128865
End: 3130724
Strand: Direct
Name: feoB [H]
Synonym: Sala_2987
Alternate gene names: 103488464
Gene position: 3128865-3130724 (Clockwise)
Preceding gene: 103488463
Following gene: 103488465
Centisome position: 93.53
GC content: 67.47
Gene sequence:
>1860_bases ATGACCGCCGCCATCCCCTCGATCGCGCTCGTCGGCAATCCCAATGCCGGGAAATCGAGCCTGTTCAACGCGCTCACCGG CGCGCGGCAAAAGATCGCCAACTATCCCGGCGTCACCGTCGAGCGGAAGGCGGGCCATGCGAGTTTCGCCGACGGCCGCC CGCTGTCGCTGATCGACCTGCCGGGCACCTACAGCCTCACCCCCGCGAGTCTCGACGAGGCGGTGACGCGCGACGTGATT CTGGGCAGGCAGGCGGGCGAGACGCGCCCCGATGCGCTGATCGTCGTGCTCGACGCCGCCAACCTCGACAATCATCTCTG CTTCGCGCTCGAACTGCTCGCGCTCGACCTGCCGACGGTCGTGGCTCTCAACATGGTCGATCTCGCGGAGCGCGACGGGC TGACGCTCGATCCCGAACGCCTGTCGCACGAGCTGGGCGTGCCCGTCGTGCCGACGGTCGCGGTGCGCAAGCGCGGTCTG GCCGATCTGCTTGCCGCGGTCGATGCCGCAATCCGCTCGCACCAGCCGCGCGAGGCGGCCGCCGGACCGGCGAACGACAG CGCGCTTCACCAGCGCGCGCGCGCGATCGCCCGCGCCGCGATCGTCAGCGAAACGCCGGTGCGCCGCTGGACGCAGCGCG TCGACAATGTGGTGCTGCACCCGGTGTTCGGCATGATCATCCTGCTCGCGCTGATGTTCGTGATGTTCCAGGCGGTCTAC GCTTGGGCCGGACCGCCCGCCGACGCGCTCGAAGCGCTGGTTGGCGCGGCTCAGGCGTGGGTTGTCGATAATGTCCCGCA GAACCTCCTCCGCGATCTGGTGGTCGAGGGACTGCTCGCGGGCGTCGGGGCGGTCGTCGTTTTCCTGCCGCAGATCCTGA TTCTCTTCCTCTTCATCCTGCTTCTGGAGGCGTCGGGCTATATGACGCGCGCGGCCTTTCTGATGGACGGGCTGATGGGC AAGGTCGGATTGTCGGGGCGCGGTTTCATCCCGCTCCTCTCCAGCTTTGCCTGCGCCGTGCCCGGCATCATGGCGACGCG CGCGATCCCCGACGAGAAGGACCGGCTGACGACGATCCTGATCGCGCCGTTGATGACCTGTTCGGCGCGGCTTCCGGTCT ATGCGCTGATCATCGCCGCCTTCATCCCCGACAGCGGGGTCGGCGGCACCGGCATCGGGCTTCAGGGTCTGGTGCTTTTC GGCCTTTATGTCGCCGGGATCGTCGGCGCGCTTGTCGTCGCCTTCGCGCTGCGCCGCACGGTGGCCAGGGGCACGGGCGC GGGCTTCATGATGGAAATGCCGCGATACCAGATGCCGCGGCTGCGCGACGTCGCGCTCGGCCTGTGGCAGCGCGCGTGGA TCTTTCTGCGCCGCGCGGGCACGATCATCGCGTTCACGACAGTCATTTTGTGGCTGCTTCTCACCTTTCCCAAGGCGCCC GAGGGGCAGAGCCAGGTCGATTATAGCATCGCCGGCCGCATCGCGAGCGGGCTGGAGGTCGCCGTCACGCCGATCGGGTT CAACCACGACATCGCGCTCGCGCTCATCCCCGCGATGGCGGCGCGCGAGGTCGCGGTGTCGGCGATGGCGACGGCGAATG CGATCGATGCCGATGGCGACGAGGAGGCGATGGCGCAGACGCTCGGCGAACGATTGCAGGGCAAGTGGAGCCTCGCCACC GCGCTCGCCTTCCTCGCCTGGTTCGTCTTTGCGCCGCAGTGCATTTCGACGATCGCGATCACGCGGCGAGAGACGAACGG ATGGAAATGGCCGCTGTTCATGGTTGGCTATTTGTTTGCGCTCGCCTATGCCGCTGCTGGTATCACATACTGGACAGCCG TTGCCTTTGGCCTAGGCTGA
Upstream 100 bases:
>100_bases GCGGCAGCATCTTTTCGCGCGATCCGCTCGCGCTCATCGTCGGACGCATGAAGGTCATCATCCGCGCGCGGCAGGCCGCC GCCATCGAAGTCGAACCCGC
Downstream 100 bases:
>100_bases TCCTCCCAACTTATGAGCGGAGCGGAGCGGCGGATGGCTGGCAGCGTCAACAAGGTAATTCTCATCGGCAACCTCGGCGC CGATCCCGAAATCAAGTCGT
Product: ferrous iron transport protein B
Products: Fe (II) [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 619; Mature: 618
Protein sequence:
>619_residues MTAAIPSIALVGNPNAGKSSLFNALTGARQKIANYPGVTVERKAGHASFADGRPLSLIDLPGTYSLTPASLDEAVTRDVI LGRQAGETRPDALIVVLDAANLDNHLCFALELLALDLPTVVALNMVDLAERDGLTLDPERLSHELGVPVVPTVAVRKRGL ADLLAAVDAAIRSHQPREAAAGPANDSALHQRARAIARAAIVSETPVRRWTQRVDNVVLHPVFGMIILLALMFVMFQAVY AWAGPPADALEALVGAAQAWVVDNVPQNLLRDLVVEGLLAGVGAVVVFLPQILILFLFILLLEASGYMTRAAFLMDGLMG KVGLSGRGFIPLLSSFACAVPGIMATRAIPDEKDRLTTILIAPLMTCSARLPVYALIIAAFIPDSGVGGTGIGLQGLVLF GLYVAGIVGALVVAFALRRTVARGTGAGFMMEMPRYQMPRLRDVALGLWQRAWIFLRRAGTIIAFTTVILWLLLTFPKAP EGQSQVDYSIAGRIASGLEVAVTPIGFNHDIALALIPAMAAREVAVSAMATANAIDADGDEEAMAQTLGERLQGKWSLAT ALAFLAWFVFAPQCISTIAITRRETNGWKWPLFMVGYLFALAYAAAGITYWTAVAFGLG
Sequences:
>Translated_619_residues MTAAIPSIALVGNPNAGKSSLFNALTGARQKIANYPGVTVERKAGHASFADGRPLSLIDLPGTYSLTPASLDEAVTRDVI LGRQAGETRPDALIVVLDAANLDNHLCFALELLALDLPTVVALNMVDLAERDGLTLDPERLSHELGVPVVPTVAVRKRGL ADLLAAVDAAIRSHQPREAAAGPANDSALHQRARAIARAAIVSETPVRRWTQRVDNVVLHPVFGMIILLALMFVMFQAVY AWAGPPADALEALVGAAQAWVVDNVPQNLLRDLVVEGLLAGVGAVVVFLPQILILFLFILLLEASGYMTRAAFLMDGLMG KVGLSGRGFIPLLSSFACAVPGIMATRAIPDEKDRLTTILIAPLMTCSARLPVYALIIAAFIPDSGVGGTGIGLQGLVLF GLYVAGIVGALVVAFALRRTVARGTGAGFMMEMPRYQMPRLRDVALGLWQRAWIFLRRAGTIIAFTTVILWLLLTFPKAP EGQSQVDYSIAGRIASGLEVAVTPIGFNHDIALALIPAMAAREVAVSAMATANAIDADGDEEAMAQTLGERLQGKWSLAT ALAFLAWFVFAPQCISTIAITRRETNGWKWPLFMVGYLFALAYAAAGITYWTAVAFGLG >Mature_618_residues TAAIPSIALVGNPNAGKSSLFNALTGARQKIANYPGVTVERKAGHASFADGRPLSLIDLPGTYSLTPASLDEAVTRDVIL GRQAGETRPDALIVVLDAANLDNHLCFALELLALDLPTVVALNMVDLAERDGLTLDPERLSHELGVPVVPTVAVRKRGLA DLLAAVDAAIRSHQPREAAAGPANDSALHQRARAIARAAIVSETPVRRWTQRVDNVVLHPVFGMIILLALMFVMFQAVYA WAGPPADALEALVGAAQAWVVDNVPQNLLRDLVVEGLLAGVGAVVVFLPQILILFLFILLLEASGYMTRAAFLMDGLMGK VGLSGRGFIPLLSSFACAVPGIMATRAIPDEKDRLTTILIAPLMTCSARLPVYALIIAAFIPDSGVGGTGIGLQGLVLFG LYVAGIVGALVVAFALRRTVARGTGAGFMMEMPRYQMPRLRDVALGLWQRAWIFLRRAGTIIAFTTVILWLLLTFPKAPE GQSQVDYSIAGRIASGLEVAVTPIGFNHDIALALIPAMAAREVAVSAMATANAIDADGDEEAMAQTLGERLQGKWSLATA LAFLAWFVFAPQCISTIAITRRETNGWKWPLFMVGYLFALAYAAAGITYWTAVAFGLG
Specific function: Fe(2+) uptake system, probably driven by GTP [H]
COG id: COG0370
COG function: function code P; Fe2+ transport system protein B
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the feoB (TC 9.A.8) family [H]
Homologues:
Organism=Escherichia coli, GI1789813, Length=729, Percent_Identity=31.6872427983539, Blast_Score=278, Evalue=6e-76,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003373 - InterPro: IPR011640 - InterPro: IPR011619 - InterPro: IPR011642 - InterPro: IPR006073 - InterPro: IPR005225 [H]
Pfam domain/function: PF07664 FeoB_C; PF02421 FeoB_N; PF07670 Gate [H]
EC number: NA
Molecular weight: Translated: 65772; Mature: 65641
Theoretical pI: Translated: 6.88; Mature: 6.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAAIPSIALVGNPNAGKSSLFNALTGARQKIANYPGVTVERKAGHASFADGRPLSLIDL CCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCEEEEEC PGTYSLTPASLDEAVTRDVILGRQAGETRPDALIVVLDAANLDNHLCFALELLALDLPTV CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCHHH VALNMVDLAERDGLTLDPERLSHELGVPVVPTVAVRKRGLADLLAAVDAAIRSHQPREAA HHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCHHHHHHCCHHHHHHHHHHHHHCCCCCHHC AGPANDSALHQRARAIARAAIVSETPVRRWTQRVDNVVLHPVFGMIILLALMFVMFQAVY CCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AWAGPPADALEALVGAAQAWVVDNVPQNLLRDLVVEGLLAGVGAVVVFLPQILILFLFIL HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLEASGYMTRAAFLMDGLMGKVGLSGRGFIPLLSSFACAVPGIMATRAIPDEKDRLTTIL HHHCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHCCCCCCHHHHHHHH IAPLMTCSARLPVYALIIAAFIPDSGVGGTGIGLQGLVLFGLYVAGIVGALVVAFALRRT HHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH VARGTGAGFMMEMPRYQMPRLRDVALGLWQRAWIFLRRAGTIIAFTTVILWLLLTFPKAP HHHCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCC EGQSQVDYSIAGRIASGLEVAVTPIGFNHDIALALIPAMAAREVAVSAMATANAIDADGD CCCCCCCHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC EEAMAQTLGERLQGKWSLATALAFLAWFVFAPQCISTIAITRRETNGWKWPLFMVGYLFA HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHH LAYAAAGITYWTAVAFGLG HHHHHHHHHHHHHHHHCCC >Mature Secondary Structure TAAIPSIALVGNPNAGKSSLFNALTGARQKIANYPGVTVERKAGHASFADGRPLSLIDL CCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCEEEEEC PGTYSLTPASLDEAVTRDVILGRQAGETRPDALIVVLDAANLDNHLCFALELLALDLPTV CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCHHH VALNMVDLAERDGLTLDPERLSHELGVPVVPTVAVRKRGLADLLAAVDAAIRSHQPREAA HHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCHHHHHHCCHHHHHHHHHHHHHCCCCCHHC AGPANDSALHQRARAIARAAIVSETPVRRWTQRVDNVVLHPVFGMIILLALMFVMFQAVY CCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AWAGPPADALEALVGAAQAWVVDNVPQNLLRDLVVEGLLAGVGAVVVFLPQILILFLFIL HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLEASGYMTRAAFLMDGLMGKVGLSGRGFIPLLSSFACAVPGIMATRAIPDEKDRLTTIL HHHCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHCCCCCCHHHHHHHH IAPLMTCSARLPVYALIIAAFIPDSGVGGTGIGLQGLVLFGLYVAGIVGALVVAFALRRT HHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH VARGTGAGFMMEMPRYQMPRLRDVALGLWQRAWIFLRRAGTIIAFTTVILWLLLTFPKAP HHHCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCC EGQSQVDYSIAGRIASGLEVAVTPIGFNHDIALALIPAMAAREVAVSAMATANAIDADGD CCCCCCCHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC EEAMAQTLGERLQGKWSLATALAFLAWFVFAPQCISTIAITRRETNGWKWPLFMVGYLFA HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHH LAYAAAGITYWTAVAFGLG HHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: Fe (II) [Periplasm] [C]
Specific reaction: Fe (II) [Periplasm] = Fe (II) [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA