| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103488436
Identifier: 103488436
GI number: 103488436
Start: 3101837
End: 3102766
Strand: Direct
Name: 103488436
Synonym: Sala_2959
Alternate gene names: NA
Gene position: 3101837-3102766 (Clockwise)
Preceding gene: 103488435
Following gene: 103488437
Centisome position: 92.73
GC content: 76.24
Gene sequence:
>930_bases ATGGCAAATCGCATTTTCATTCCGGCCCTCGCGCTCGCCGCGTCGGCCATGGCTTTTTCGGCGCCGGCCGCGGCGCAGCT GCTTGGCGGCAGCGGCGGACTGGGCGGCGGGCTTGGCGGAACGCTGGGCGGCACGCTCGGCAATCCGACCGGGCCGATCG GTGGCACGCTCGGCACGGCGGGCGAACTTGCGGGTTCGGGCCGCGGCGAGGCCAAGGTCGACCGCCGTTCGGGCCGCGTC GAAGGCCGCGGCGGCGCCGACGCGCGCGGCAGCGGCTCGGCCGATGCCGGCGGCAATCTGCTCGGCAGCACGCTGGGCGG CAACGCTCAGGGTTCGGGCGGGGCCTCGGCCGACGGCAGCGTCGGCGCGCAGGCGGTCGGCACCGATTTCGCGCGTGACA CGGTCGGCGGCGCCCTCGGCACCGCGCGCGGCGCCGCCGCCACCGCCACCGGGACCGCGCAAGGCGCGGCCGGGGCTGTC CGCGACCGGGCGGGCGGCGCGCTGTCGAACGTCTCAGGCAGCGCCAGCGCCGCCGGTTCGGCCGCGGGCAGTTTTCAGGG CAGCCTCGGCCAGCTCGCGGCGGCCGGCAGCGGCGCGGCCAGCGGCAGCGGCATGTTCGCTGTCATGCCGGGAATGCCCG TCACCGACCCGCGCGGCAAGGTGATCGGCTATGTCCATGACGTGCGGCAGACGGGCCGCGGCGTCGTCGAGGCGGTGACG GTCGAGGTCGGCAACCGCGTCGCGACGCTTCCGGCCGCCAGCTTTGCCGGATCGGGCGATGTGCTCGTCAGCGGCATGAC CAAGGGCCAGCTCAAGGACGCCGCAAAGGCGCAGGAGCGGGCGGCCGAAGAGGATGGCAGCGCGCCGCCCGCCCGGTCGA CGTCGTCGCGGGGCAACCGCGCCGAACGCGGCCACACCCGCGCCGACTGA
Upstream 100 bases:
>100_bases CTGATCACCTCTTACGCGATTTTTTTGGAAGAATATCCGACGCGCCATCGTTCTTGCAGCAGGCCCATCCCCTCCGGGCC CCAAATGCAGGAGTAGGACA
Downstream 100 bases:
>100_bases TCCCACGGTCGGTTCCAGCGAAATGCGTCGGCGCGCTGCCGACGCATTTCCTGTTGGCGCGATTCAAATGCGAAAAAGCG ATCCGTTATGGCGCCATCGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 309; Mature: 308
Protein sequence:
>309_residues MANRIFIPALALAASAMAFSAPAAAQLLGGSGGLGGGLGGTLGGTLGNPTGPIGGTLGTAGELAGSGRGEAKVDRRSGRV EGRGGADARGSGSADAGGNLLGSTLGGNAQGSGGASADGSVGAQAVGTDFARDTVGGALGTARGAAATATGTAQGAAGAV RDRAGGALSNVSGSASAAGSAAGSFQGSLGQLAAAGSGAASGSGMFAVMPGMPVTDPRGKVIGYVHDVRQTGRGVVEAVT VEVGNRVATLPAASFAGSGDVLVSGMTKGQLKDAAKAQERAAEEDGSAPPARSTSSRGNRAERGHTRAD
Sequences:
>Translated_309_residues MANRIFIPALALAASAMAFSAPAAAQLLGGSGGLGGGLGGTLGGTLGNPTGPIGGTLGTAGELAGSGRGEAKVDRRSGRV EGRGGADARGSGSADAGGNLLGSTLGGNAQGSGGASADGSVGAQAVGTDFARDTVGGALGTARGAAATATGTAQGAAGAV RDRAGGALSNVSGSASAAGSAAGSFQGSLGQLAAAGSGAASGSGMFAVMPGMPVTDPRGKVIGYVHDVRQTGRGVVEAVT VEVGNRVATLPAASFAGSGDVLVSGMTKGQLKDAAKAQERAAEEDGSAPPARSTSSRGNRAERGHTRAD >Mature_308_residues ANRIFIPALALAASAMAFSAPAAAQLLGGSGGLGGGLGGTLGGTLGNPTGPIGGTLGTAGELAGSGRGEAKVDRRSGRVE GRGGADARGSGSADAGGNLLGSTLGGNAQGSGGASADGSVGAQAVGTDFARDTVGGALGTARGAAATATGTAQGAAGAVR DRAGGALSNVSGSASAAGSAAGSFQGSLGQLAAAGSGAASGSGMFAVMPGMPVTDPRGKVIGYVHDVRQTGRGVVEAVTV EVGNRVATLPAASFAGSGDVLVSGMTKGQLKDAAKAQERAAEEDGSAPPARSTSSRGNRAERGHTRAD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28901; Mature: 28770
Theoretical pI: Translated: 10.62; Mature: 10.62
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MANRIFIPALALAASAMAFSAPAAAQLLGGSGGLGGGLGGTLGGTLGNPTGPIGGTLGTA CCCCEEHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC GELAGSGRGEAKVDRRSGRVEGRGGADARGSGSADAGGNLLGSTLGGNAQGSGGASADGS HHHCCCCCCCCEEHHCCCCCCCCCCCCCCCCCCCCCCCCEEHHCCCCCCCCCCCCCCCCC VGAQAVGTDFARDTVGGALGTARGAAATATGTAQGAAGAVRDRAGGALSNVSGSASAAGS CCCHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCCHHCCCCCCCCCCC AAGSFQGSLGQLAAAGSGAASGSGMFAVMPGMPVTDPRGKVIGYVHDVRQTGRGVVEAVT CCCCCCCCHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCEEHHHHHHHHHCCCEEEEEE VEVGNRVATLPAASFAGSGDVLVSGMTKGQLKDAAKAQERAAEEDGSAPPARSTSSRGNR EHHCCEEEECCCHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC AERGHTRAD CCCCCCCCC >Mature Secondary Structure ANRIFIPALALAASAMAFSAPAAAQLLGGSGGLGGGLGGTLGGTLGNPTGPIGGTLGTA CCCEEHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC GELAGSGRGEAKVDRRSGRVEGRGGADARGSGSADAGGNLLGSTLGGNAQGSGGASADGS HHHCCCCCCCCEEHHCCCCCCCCCCCCCCCCCCCCCCCCEEHHCCCCCCCCCCCCCCCCC VGAQAVGTDFARDTVGGALGTARGAAATATGTAQGAAGAVRDRAGGALSNVSGSASAAGS CCCHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCCHHCCCCCCCCCCC AAGSFQGSLGQLAAAGSGAASGSGMFAVMPGMPVTDPRGKVIGYVHDVRQTGRGVVEAVT CCCCCCCCHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCEEHHHHHHHHHCCCEEEEEE VEVGNRVATLPAASFAGSGDVLVSGMTKGQLKDAAKAQERAAEEDGSAPPARSTSSRGNR EHHCCEEEECCCHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC AERGHTRAD CCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA