| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is epr [H]
Identifier: 103488435
GI number: 103488435
Start: 3100469
End: 3101740
Strand: Direct
Name: epr [H]
Synonym: Sala_2958
Alternate gene names: 103488435
Gene position: 3100469-3101740 (Clockwise)
Preceding gene: 103488432
Following gene: 103488436
Centisome position: 92.68
GC content: 73.19
Gene sequence:
>1272_bases ATGAGATATGTGATCGCAGCGCTGCTGACGCTTTGCTTCCTGTCCGGCGGGGTCATCCCGCGCGCCGCGGGGCAGGTTGC GCTGCCGCCGGTCGGCCTCCCCGACAGGGGGCGGATCCTGCCGGGCCTTCCCGATCTCGCAGCCGAACCGCTCACCGTGG CGGAGGACAAGCTGCGCACGCTGCGGCTTGACCGCATCGCCGCGCTGGTAAGGCGCCATCCGGATGCTATCGAACGCGAT GCGCGCGGCGACCCCGCCGTGCGCGGCGTGCTCGTCGCCATCGGTGTCGACACCGCGATGGTCGCGCGCGCGCGCGCCGC GGGCTTTGCGCTCATCGACCGCGAACGGCTCGATTCGCTGGGACTCGACATCGTGCGCTTTCGCGTGCCCGATGGTCGCA GCCTTGCGCGTGCGCAAAAACAGCTCGCCCGTCTGTTGCCCGATGCCGAAGTCGACGTCGATCATATCTATTTCGCGAGC GGGCCGGGCGGCGCTCTGCCGGGGGCGGCGCTTGTGGCGACGACGGGGGCGGGCGGCGGCGCCGCGCCGCTCGGCCTGAT CGACGGCGGCGTGGCCGCGCATCCTTCGGTGGCGGGGCGCGTCGAACAAAGGGGATTTGCCCGCGGCGCGCCGACAGCCA GCGAACATGGAACGGCGGTGGCCTCGCTGCTCGTCGGCGCAGGCGCGGTGCAGGGCGCGGCGCCGGGGCGGCGCCTGCTC GCCGCCGACGTCTATGGCAACGATCCGGCGGGCGGCAGCGCCAGCGCGATCGCCCGCGCGCTCGGCTGGCTCGCGGCGCG CCGCGTCGCGGTGACGACGATCAGCCTCGTCGGCCCCGACAACAAGCTGCTCGCGGCCGCAGTGGCGGCGGCGCAGCGCA AGGGAATGCTGATCGTCGCGGCGGTGGGTAACGACGGGCCCGCCGCGCCCCCCGCCTACCCTGCCTCCTATCGCGGTGTG CTCGCGGTTACCGGCGTCGATGCCAGGGCGCGCGTGCTTCCCGAAGCGGGGCGGGCGCTTCATGTCGACTTTGCGGCGCC CGGCGACGCCGTGCGCGCGGCGACCGGCCCGGCCAGCATCGAACGGCTGCGCGGGACATCCTTTGCGGCGCCGCTCGTCG CCGGGCGCCTCGCGCTTCACTATCCTGCCGCGTCGATCGCGGCGATCGGCCCGGCGATCACGGTGCTGGTGATGGAGGCG CGCGACCTTGGCCGCAAGGGCCGTGACAAAATCTATGGTCATGGCCTGATCTGCGGCGATTGCGGCCGCTGA
Upstream 100 bases:
>100_bases TTTCGATTGCCTGTGGACGAAACGATGTCCTTCTATCGTTTCTTCCCTATCGTGCTAATTTTTTCCGCGAAGGCGGGCCG CGGCGGCCCGGAGAGACGAG
Downstream 100 bases:
>100_bases TCACCTCTTACGCGATTTTTTTGGAAGAATATCCGACGCGCCATCGTTCTTGCAGCAGGCCCATCCCCTCCGGGCCCCAA ATGCAGGAGTAGGACAATGG
Product: peptidase S8/S53 subtilisin kexin sedolisin
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 423; Mature: 423
Protein sequence:
>423_residues MRYVIAALLTLCFLSGGVIPRAAGQVALPPVGLPDRGRILPGLPDLAAEPLTVAEDKLRTLRLDRIAALVRRHPDAIERD ARGDPAVRGVLVAIGVDTAMVARARAAGFALIDRERLDSLGLDIVRFRVPDGRSLARAQKQLARLLPDAEVDVDHIYFAS GPGGALPGAALVATTGAGGGAAPLGLIDGGVAAHPSVAGRVEQRGFARGAPTASEHGTAVASLLVGAGAVQGAAPGRRLL AADVYGNDPAGGSASAIARALGWLAARRVAVTTISLVGPDNKLLAAAVAAAQRKGMLIVAAVGNDGPAAPPAYPASYRGV LAVTGVDARARVLPEAGRALHVDFAAPGDAVRAATGPASIERLRGTSFAAPLVAGRLALHYPAASIAAIGPAITVLVMEA RDLGRKGRDKIYGHGLICGDCGR
Sequences:
>Translated_423_residues MRYVIAALLTLCFLSGGVIPRAAGQVALPPVGLPDRGRILPGLPDLAAEPLTVAEDKLRTLRLDRIAALVRRHPDAIERD ARGDPAVRGVLVAIGVDTAMVARARAAGFALIDRERLDSLGLDIVRFRVPDGRSLARAQKQLARLLPDAEVDVDHIYFAS GPGGALPGAALVATTGAGGGAAPLGLIDGGVAAHPSVAGRVEQRGFARGAPTASEHGTAVASLLVGAGAVQGAAPGRRLL AADVYGNDPAGGSASAIARALGWLAARRVAVTTISLVGPDNKLLAAAVAAAQRKGMLIVAAVGNDGPAAPPAYPASYRGV LAVTGVDARARVLPEAGRALHVDFAAPGDAVRAATGPASIERLRGTSFAAPLVAGRLALHYPAASIAAIGPAITVLVMEA RDLGRKGRDKIYGHGLICGDCGR >Mature_423_residues MRYVIAALLTLCFLSGGVIPRAAGQVALPPVGLPDRGRILPGLPDLAAEPLTVAEDKLRTLRLDRIAALVRRHPDAIERD ARGDPAVRGVLVAIGVDTAMVARARAAGFALIDRERLDSLGLDIVRFRVPDGRSLARAQKQLARLLPDAEVDVDHIYFAS GPGGALPGAALVATTGAGGGAAPLGLIDGGVAAHPSVAGRVEQRGFARGAPTASEHGTAVASLLVGAGAVQGAAPGRRLL AADVYGNDPAGGSASAIARALGWLAARRVAVTTISLVGPDNKLLAAAVAAAQRKGMLIVAAVGNDGPAAPPAYPASYRGV LAVTGVDARARVLPEAGRALHVDFAAPGDAVRAATGPASIERLRGTSFAAPLVAGRLALHYPAASIAAIGPAITVLVMEA RDLGRKGRDKIYGHGLICGDCGR
Specific function: Unknown
COG id: COG1404
COG function: function code O; Subtilisin-like serine proteases
Gene ontology:
Cell location: Secreted [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase S8 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000209 - InterPro: IPR022398 - InterPro: IPR015500 - InterPro: IPR009020 - InterPro: IPR010259 [H]
Pfam domain/function: PF05922 Inhibitor_I9; PF00082 Peptidase_S8 [H]
EC number: NA
Molecular weight: Translated: 42789; Mature: 42789
Theoretical pI: Translated: 10.58; Mature: 10.58
Prosite motif: PS00137 SUBTILASE_HIS ; PS00138 SUBTILASE_SER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRYVIAALLTLCFLSGGVIPRAAGQVALPPVGLPDRGRILPGLPDLAAEPLTVAEDKLRT CHHHHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH LRLDRIAALVRRHPDAIERDARGDPAVRGVLVAIGVDTAMVARARAAGFALIDRERLDSL HHHHHHHHHHHHCCHHHHHCCCCCHHHEEEEEEECCCHHHHHHHHHCCEEEECHHHHHHC GLDIVRFRVPDGRSLARAQKQLARLLPDAEVDVDHIYFASGPGGALPGAALVATTGAGGG CCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCEEEEECCCCCC AAPLGLIDGGVAAHPSVAGRVEQRGFARGAPTASEHGTAVASLLVGAGAVQGAAPGRRLL CCCCCEECCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEE AADVYGNDPAGGSASAIARALGWLAARRVAVTTISLVGPDNKLLAAAVAAAQRKGMLIVA EEECCCCCCCCCHHHHHHHHHHHHHHHHEEEEEEEEECCCCHHHHHHHHHHHHCCEEEEE AVGNDGPAAPPAYPASYRGVLAVTGVDARARVLPEAGRALHVDFAAPGDAVRAATGPASI EECCCCCCCCCCCCCCCCCEEEEECCCHHHHHCCCCCCEEEEEECCCCCCCCCCCCHHHH ERLRGTSFAAPLVAGRLALHYPAASIAAIGPAITVLVMEARDLGRKGRDKIYGHGLICGD HHHCCCCHHHHHHHHHHHEECCCHHHHHHHHHHEEEEEEHHHCCCCCCCCEEECCEEECC CGR CCC >Mature Secondary Structure MRYVIAALLTLCFLSGGVIPRAAGQVALPPVGLPDRGRILPGLPDLAAEPLTVAEDKLRT CHHHHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH LRLDRIAALVRRHPDAIERDARGDPAVRGVLVAIGVDTAMVARARAAGFALIDRERLDSL HHHHHHHHHHHHCCHHHHHCCCCCHHHEEEEEEECCCHHHHHHHHHCCEEEECHHHHHHC GLDIVRFRVPDGRSLARAQKQLARLLPDAEVDVDHIYFASGPGGALPGAALVATTGAGGG CCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCEEEEECCCCCC AAPLGLIDGGVAAHPSVAGRVEQRGFARGAPTASEHGTAVASLLVGAGAVQGAAPGRRLL CCCCCEECCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEE AADVYGNDPAGGSASAIARALGWLAARRVAVTTISLVGPDNKLLAAAVAAAQRKGMLIVA EEECCCCCCCCCHHHHHHHHHHHHHHHHEEEEEEEEECCCCHHHHHHHHHHHHCCEEEEE AVGNDGPAAPPAYPASYRGVLAVTGVDARARVLPEAGRALHVDFAAPGDAVRAATGPASI EECCCCCCCCCCCCCCCCCEEEEECCCHHHHHCCCCCCEEEEEECCCCCCCCCCCCHHHH ERLRGTSFAAPLVAGRLALHYPAASIAAIGPAITVLVMEARDLGRKGRDKIYGHGLICGD HHHCCCCHHHHHHHHHHHEECCCHHHHHHHHHHEEEEEEHHHCCCCCCCCEEECCEEECC CGR CCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2116590; 3142851; 7934828; 9384377 [H]