Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103488350

Identifier: 103488350

GI number: 103488350

Start: 3023774

End: 3025300

Strand: Reverse

Name: 103488350

Synonym: Sala_2873

Alternate gene names: NA

Gene position: 3025300-3023774 (Counterclockwise)

Preceding gene: 103488351

Following gene: 103488348

Centisome position: 90.44

GC content: 69.09

Gene sequence:

>1527_bases
TTGAGCCAGACGGACAGCGCAGCCGCGCCCCTTTCGCCCCGTGCATCGCCGCAGGACGCCGACACCGTTGCGCTTGCCAA
GGGCGGGCGCACCAACTTTTTCGGCTTCATCCTGCGCCTCGTCGCGCGCCTGCCCTTTCTCTATGTCGCGGGCCGCTGGT
ACGGGCCCGAAGCGGTCGGGCGTTTCGCCTTTGCGGTGCTGGTCATCGAACTTGTCGCGCAGCTCGCGACGCTCGGCCTC
AAGCGCGGCCTCGCCGAACAGCTGAGCGCGCCCGGCGCCGACCAGCGCACCGTCGTCTGGGACGGCATGTTCGTGGCGTT
CCTGGCCTCGGCCGCGGGATCGGTGCTGCTCCTCCTGCTGCCGCAGCTCATGTATCCCGCGGGCAACATCAACGAAATCG
ACCGCTGGATGGCGTGCCTCGTCTTTGTGATCGCGGGGACCGACATCGCCCTGGCCGCGTGCGCCTACAAGTTCGACATC
GGCGCCACGGTGCGCGCGCGCGCGATCGTCGAACCGTGGGTGATCAGCGCCGCGGCGGCGGGATTCTGGTTCGTGTCGGC
CGAAAACGGGCTGATGCTGTCCTATGCCGCGGCGATGCTCGGCGCCTTCCTGACCGCGCTCATCCCGATGGTCCGCCATT
TCGGAGGGCCGGGCGTATGGCGACCGCACCCCGCGCAGCTCATCACGCTGGCGCGGCGCAACGCCCCGCTCGCCGCCGCC
GACGCGATCGAATGGGGGACACGCCGCCTCGACCTCTTCATCCTTGGCCAGTTCACCTCGCCGACGATCTACGGCATCTA
TTATATGGCGCAGCAGGTCGCCTCGCTGCCGCAAAAGCTCAAGACGAGCTTCGAGCCGATTCTCGGCCCCGTCATCACGC
GCAATCTCGCCGAAAAGCGGCTTTCCGCGGTCGCGGCGCAGGTGAGCCAGGTCGGCTTCTGGATCATCGCCGCGCAAGCC
GGGGTCGCGCTGGCGCTCGGCATTCCCGGTGAGGCGGTGATGGGGCTCGTCGGTCCCGAGTTTGTGAGCGGCACCGCCGC
GCTCGCCTTCCTGCTCGCCGCCGAGGTCGTCGCTGCCACCGCCGTGGTCAGCGAAGCGGCGCTCGTCTATGTCGCGCGCC
ACCGCAACCTGCTCATCAGCATCGCGACGCTCGCGCTGCAGGCGGCGCTCAGCGTCGCACTGATCCTGATCGCGCAGTCG
ATGGGCTTGCCGCCGATCTATTATGCCGCGGCGGTCGCGCTCGCGCTGATGATCGCGCTCGGCTTTGCGTCGCTGGTCAA
GGCGCGCCTCCTCTCGCACATCCTTGGCGCGCCGGTGAACAGCCTGCGCTGGGCGCTCGTCTGGGCGACCACCGGCGCCA
CGGTGCTCGGCTGGGGCGCGACGCAGCTTCCCGAATGGGCCGAGCTGCTGATCGGCGTCCCCGTCATCCTCGGCATCTAT
GGCTGGCTGATCTGGACGCGCGGCTTCGGCCCCGCCGACCGCGAGCTGTTCAAGAAGCACCCGCCGGACAAGGTCGTGGC
GGTTTGA

Upstream 100 bases:

>100_bases
CCGCTGCGACCCGAAGGGCAATGACAGATTTCCACCGATTGCCTGCCCCTTCCCGCCGCGCTAGGATGCCCGCCGGGGAT
CAGCAGAAGGGGCGCGAGGC

Downstream 100 bases:

>100_bases
CAGTCAGACGGCGGCTTCGGGGCGGTGAGCGGGCTGCCACCTCCCCGTCGCTGCGCGACAGCGACGATTGGGGAGCCACC
TGCGACCACTTTCGGGTCCT

Product: O-antigen and teichoic acid-like export protein

Products: NA

Alternate protein names: O-Antigen And Teichoic Acid-Like Export Protein; Polysaccharide Transporter

Number of amino acids: Translated: 508; Mature: 507

Protein sequence:

>508_residues
MSQTDSAAAPLSPRASPQDADTVALAKGGRTNFFGFILRLVARLPFLYVAGRWYGPEAVGRFAFAVLVIELVAQLATLGL
KRGLAEQLSAPGADQRTVVWDGMFVAFLASAAGSVLLLLLPQLMYPAGNINEIDRWMACLVFVIAGTDIALAACAYKFDI
GATVRARAIVEPWVISAAAAGFWFVSAENGLMLSYAAAMLGAFLTALIPMVRHFGGPGVWRPHPAQLITLARRNAPLAAA
DAIEWGTRRLDLFILGQFTSPTIYGIYYMAQQVASLPQKLKTSFEPILGPVITRNLAEKRLSAVAAQVSQVGFWIIAAQA
GVALALGIPGEAVMGLVGPEFVSGTAALAFLLAAEVVAATAVVSEAALVYVARHRNLLISIATLALQAALSVALILIAQS
MGLPPIYYAAAVALALMIALGFASLVKARLLSHILGAPVNSLRWALVWATTGATVLGWGATQLPEWAELLIGVPVILGIY
GWLIWTRGFGPADRELFKKHPPDKVVAV

Sequences:

>Translated_508_residues
MSQTDSAAAPLSPRASPQDADTVALAKGGRTNFFGFILRLVARLPFLYVAGRWYGPEAVGRFAFAVLVIELVAQLATLGL
KRGLAEQLSAPGADQRTVVWDGMFVAFLASAAGSVLLLLLPQLMYPAGNINEIDRWMACLVFVIAGTDIALAACAYKFDI
GATVRARAIVEPWVISAAAAGFWFVSAENGLMLSYAAAMLGAFLTALIPMVRHFGGPGVWRPHPAQLITLARRNAPLAAA
DAIEWGTRRLDLFILGQFTSPTIYGIYYMAQQVASLPQKLKTSFEPILGPVITRNLAEKRLSAVAAQVSQVGFWIIAAQA
GVALALGIPGEAVMGLVGPEFVSGTAALAFLLAAEVVAATAVVSEAALVYVARHRNLLISIATLALQAALSVALILIAQS
MGLPPIYYAAAVALALMIALGFASLVKARLLSHILGAPVNSLRWALVWATTGATVLGWGATQLPEWAELLIGVPVILGIY
GWLIWTRGFGPADRELFKKHPPDKVVAV
>Mature_507_residues
SQTDSAAAPLSPRASPQDADTVALAKGGRTNFFGFILRLVARLPFLYVAGRWYGPEAVGRFAFAVLVIELVAQLATLGLK
RGLAEQLSAPGADQRTVVWDGMFVAFLASAAGSVLLLLLPQLMYPAGNINEIDRWMACLVFVIAGTDIALAACAYKFDIG
ATVRARAIVEPWVISAAAAGFWFVSAENGLMLSYAAAMLGAFLTALIPMVRHFGGPGVWRPHPAQLITLARRNAPLAAAD
AIEWGTRRLDLFILGQFTSPTIYGIYYMAQQVASLPQKLKTSFEPILGPVITRNLAEKRLSAVAAQVSQVGFWIIAAQAG
VALALGIPGEAVMGLVGPEFVSGTAALAFLLAAEVVAATAVVSEAALVYVARHRNLLISIATLALQAALSVALILIAQSM
GLPPIYYAAAVALALMIALGFASLVKARLLSHILGAPVNSLRWALVWATTGATVLGWGATQLPEWAELLIGVPVILGIYG
WLIWTRGFGPADRELFKKHPPDKVVAV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 53758; Mature: 53627

Theoretical pI: Translated: 9.70; Mature: 9.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQTDSAAAPLSPRASPQDADTVALAKGGRTNFFGFILRLVARLPFLYVAGRWYGPEAVG
CCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCHHEEECCCCCHHHHH
RFAFAVLVIELVAQLATLGLKRGLAEQLSAPGADQRTVVWDGMFVAFLASAAGSVLLLLL
HHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHH
PQLMYPAGNINEIDRWMACLVFVIAGTDIALAACAYKFDIGATVRARAIVEPWVISAAAA
HHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
GFWFVSAENGLMLSYAAAMLGAFLTALIPMVRHFGGPGVWRPHPAQLITLARRNAPLAAA
CEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCHHH
DAIEWGTRRLDLFILGQFTSPTIYGIYYMAQQVASLPQKLKTSFEPILGPVITRNLAEKR
HHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSAVAAQVSQVGFWIIAAQAGVALALGIPGEAVMGLVGPEFVSGTAALAFLLAAEVVAAT
HHHHHHHHHHHHHEEEEECCCEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
AVVSEAALVYVARHRNLLISIATLALQAALSVALILIAQSMGLPPIYYAAAVALALMIAL
HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
GFASLVKARLLSHILGAPVNSLRWALVWATTGATVLGWGATQLPEWAELLIGVPVILGIY
HHHHHHHHHHHHHHHCCCHHHHEEEEEEEECCCEEEECCCCCCHHHHHHHHHHHHHHHHH
GWLIWTRGFGPADRELFKKHPPDKVVAV
HHHHHHCCCCCCHHHHHHCCCCCCEECC
>Mature Secondary Structure 
SQTDSAAAPLSPRASPQDADTVALAKGGRTNFFGFILRLVARLPFLYVAGRWYGPEAVG
CCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCHHEEECCCCCHHHHH
RFAFAVLVIELVAQLATLGLKRGLAEQLSAPGADQRTVVWDGMFVAFLASAAGSVLLLLL
HHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHH
PQLMYPAGNINEIDRWMACLVFVIAGTDIALAACAYKFDIGATVRARAIVEPWVISAAAA
HHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
GFWFVSAENGLMLSYAAAMLGAFLTALIPMVRHFGGPGVWRPHPAQLITLARRNAPLAAA
CEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCHHH
DAIEWGTRRLDLFILGQFTSPTIYGIYYMAQQVASLPQKLKTSFEPILGPVITRNLAEKR
HHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSAVAAQVSQVGFWIIAAQAGVALALGIPGEAVMGLVGPEFVSGTAALAFLLAAEVVAAT
HHHHHHHHHHHHHEEEEECCCEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
AVVSEAALVYVARHRNLLISIATLALQAALSVALILIAQSMGLPPIYYAAAVALALMIAL
HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
GFASLVKARLLSHILGAPVNSLRWALVWATTGATVLGWGATQLPEWAELLIGVPVILGIY
HHHHHHHHHHHHHHHCCCHHHHEEEEEEEECCCEEEECCCCCCHHHHHHHHHHHHHHHHH
GWLIWTRGFGPADRELFKKHPPDKVVAV
HHHHHHCCCCCCHHHHHHCCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA