Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is prc [C]

Identifier: 103488232

GI number: 103488232

Start: 2903730

End: 2905196

Strand: Direct

Name: prc [C]

Synonym: Sala_2755

Alternate gene names: 103488232

Gene position: 2903730-2905196 (Clockwise)

Preceding gene: 103488231

Following gene: 103488233

Centisome position: 86.8

GC content: 66.19

Gene sequence:

>1467_bases
ATGATGATGAAATCCAGGCAATCGCTGGCGGCGGTGACGCTTGCCGCGTTGCTGCTGACGTCGTGCGGCGGCGGGGGCGA
TTCGAGTCTCGGCAGCGGCGGTCCGGTTACGGTCACGCCCACACCGTCGCCGACACCGGCGCCAACCGCCAATTGCGCGC
TCGCCGCGCGGCAGAGCTTTGCCAAGGCGGTGATCGACGAGTGGTATCTGTTTCCCGGCGACGTCGCGGTCGGCGTCAAT
CCGGCGAGCTTCGGCGACGTCCAATCCTATATCGACGCGCTCGTCGCACCCGCGCGGGCGCTCAACAAGGATCGCTTCTT
CACCTACATCACCTCGATCGCGGAGGAGAACGCCTTTTTCTCCAGCGGGTCGAGCGCCGGGTTCGGCGTGCGGCTGGTCT
ATGATGCCGCGAACCAGCGGTTGCTGATCGCCGAAGCCTATGAAAGCGCGCCCGCCTTTGCCGCGGGGATCGATCGCGGC
ACCGCGATCGTCGCGATCGGGACGACTGCGAGCAATTTGCGCAGTATCGCCGACATCGTCGCGGCCGAGGGCACCGCAGG
CATCACCGCCGCGCTCGGCCCCAACGACCCCGGGATCACGCGGGTTTTGCGCATCGCCGACGCCGCCGGGACGCGCAACG
TCACGGTGACCAAGGCCGATTACGCACTCGATCCGGTGTCCGATCGCTATGGCGCAAAAATCATCAGCGAGGGCGGCCGC
AACTATGGCTATCTCAACCTGCGCACCTTCATCAGCTCGGCCGACGACCAGCTGCGCGCCGCCTTTGCCGATTTCCGCGC
GCAGGGCGTCACCGACATCATCATCGATTTTCGTTACAATGGCGGCGGCCTCGTCTCGACCGCCAATCTGATGGGCGACC
TGCTGGGAGCCGGGCGCAGCGGCCAGATTTTCTCGCAGACCATATTTCGCTCGAGCAAGTCGGCGGAGAATGACGAGCAT
CGCTTCGCGCCCCGCAGCGAATCGATCGCGCCGACGCGCATCGCCTTCATCGGCACGGGATCGACCGCATCGGCAAGCGA
GTTGGTGATCAATTCGATGCTGCCCTATCTCGGCACCAGCATGACATTGGTGGGCAGCAACACCTTTGGCAAGCCCGTTG
GCCAGATCGCGCTCGATCGCGCCGAATGCGACGACCGGATGCGTGTCGTCGCCTTTGCGACCGGCAATGCGGCGGGCCAG
AGCGATTATTATGACGGGCTGGCGCCAAAAATCGCGAACAGCTGCGCCGCGGGCGATGATCTCAACATCCCGCTGGGCGA
CCCGCGCGAGGCGTCGATCCGCACCGCGATCGACTTCCTGGCGGGCAACGCCTGCCCGACGCGCATCGCCGAGGCGAGCG
TGGGTGCGGCGTCGCGAAGCAGCGGCGCCCGGATGAGCGCCGAGCCCGAAATGCTCGTTCCCGACCGGCCGAGCGCGGCG
CAGCGCGAACTCCCCGGTCTGTTCTGA

Upstream 100 bases:

>100_bases
GATCGCCCGAACTTTATGTGATCGCACAGGGTTTCAAGGGACGCGGTGATGCGGCATAACCCCCTGTAAACGGACAGTCG
GTTCGGGCCGGGGAGACGGG

Downstream 100 bases:

>100_bases
CGACGGCAATCGACGGGAGCAGCGCATGGCCGCGCTGATGCTGCAAGGCACCGGCTCCGACGTCGGCAAGTCGGTGCTCG
TCGCCGGGCTGTGCCGGGCG

Product: peptidase S41

Products: NA

Alternate protein names: Carboxyl-Terminal Protease; S41 Family Peptidase; Peptidase Family S; PDZ/DHR/GLGFPeptidase S; Peptidase; Peptidase Family Protein; Carboxyl- Protease

Number of amino acids: Translated: 488; Mature: 488

Protein sequence:

>488_residues
MMMKSRQSLAAVTLAALLLTSCGGGGDSSLGSGGPVTVTPTPSPTPAPTANCALAARQSFAKAVIDEWYLFPGDVAVGVN
PASFGDVQSYIDALVAPARALNKDRFFTYITSIAEENAFFSSGSSAGFGVRLVYDAANQRLLIAEAYESAPAFAAGIDRG
TAIVAIGTTASNLRSIADIVAAEGTAGITAALGPNDPGITRVLRIADAAGTRNVTVTKADYALDPVSDRYGAKIISEGGR
NYGYLNLRTFISSADDQLRAAFADFRAQGVTDIIIDFRYNGGGLVSTANLMGDLLGAGRSGQIFSQTIFRSSKSAENDEH
RFAPRSESIAPTRIAFIGTGSTASASELVINSMLPYLGTSMTLVGSNTFGKPVGQIALDRAECDDRMRVVAFATGNAAGQ
SDYYDGLAPKIANSCAAGDDLNIPLGDPREASIRTAIDFLAGNACPTRIAEASVGAASRSSGARMSAEPEMLVPDRPSAA
QRELPGLF

Sequences:

>Translated_488_residues
MMMKSRQSLAAVTLAALLLTSCGGGGDSSLGSGGPVTVTPTPSPTPAPTANCALAARQSFAKAVIDEWYLFPGDVAVGVN
PASFGDVQSYIDALVAPARALNKDRFFTYITSIAEENAFFSSGSSAGFGVRLVYDAANQRLLIAEAYESAPAFAAGIDRG
TAIVAIGTTASNLRSIADIVAAEGTAGITAALGPNDPGITRVLRIADAAGTRNVTVTKADYALDPVSDRYGAKIISEGGR
NYGYLNLRTFISSADDQLRAAFADFRAQGVTDIIIDFRYNGGGLVSTANLMGDLLGAGRSGQIFSQTIFRSSKSAENDEH
RFAPRSESIAPTRIAFIGTGSTASASELVINSMLPYLGTSMTLVGSNTFGKPVGQIALDRAECDDRMRVVAFATGNAAGQ
SDYYDGLAPKIANSCAAGDDLNIPLGDPREASIRTAIDFLAGNACPTRIAEASVGAASRSSGARMSAEPEMLVPDRPSAA
QRELPGLF
>Mature_488_residues
MMMKSRQSLAAVTLAALLLTSCGGGGDSSLGSGGPVTVTPTPSPTPAPTANCALAARQSFAKAVIDEWYLFPGDVAVGVN
PASFGDVQSYIDALVAPARALNKDRFFTYITSIAEENAFFSSGSSAGFGVRLVYDAANQRLLIAEAYESAPAFAAGIDRG
TAIVAIGTTASNLRSIADIVAAEGTAGITAALGPNDPGITRVLRIADAAGTRNVTVTKADYALDPVSDRYGAKIISEGGR
NYGYLNLRTFISSADDQLRAAFADFRAQGVTDIIIDFRYNGGGLVSTANLMGDLLGAGRSGQIFSQTIFRSSKSAENDEH
RFAPRSESIAPTRIAFIGTGSTASASELVINSMLPYLGTSMTLVGSNTFGKPVGQIALDRAECDDRMRVVAFATGNAAGQ
SDYYDGLAPKIANSCAAGDDLNIPLGDPREASIRTAIDFLAGNACPTRIAEASVGAASRSSGARMSAEPEMLVPDRPSAA
QRELPGLF

Specific function: Involved In The Cleavage Of A C-Terminal Peptide Of 11 Residues From The Precursor Form Of Penicillin-Binding Protein 3 (Pbp3). May Be Involved In Protection Of The Bacterium From Thermal And Osmotic Stresses. [C]

COG id: COG0793

COG function: function code M; Periplasmic protease

Gene ontology:

Cell location: Associated With The Periplasmic Protein Side Of The Cytoplasm Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 3.4.21.102 [C]

Molecular weight: Translated: 50536; Mature: 50536

Theoretical pI: Translated: 4.75; Mature: 4.75

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMMKSRQSLAAVTLAALLLTSCGGGGDSSLGSGGPVTVTPTPSPTPAPTANCALAARQSF
CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHH
AKAVIDEWYLFPGDVAVGVNPASFGDVQSYIDALVAPARALNKDRFFTYITSIAEENAFF
HHHHHHHHEECCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCC
SSGSSAGFGVRLVYDAANQRLLIAEAYESAPAFAAGIDRGTAIVAIGTTASNLRSIADIV
CCCCCCCCEEEEEEECCCCEEEEEEHHCCCCCHHHCCCCCCEEEEECCCHHHHHHHHHHH
AAEGTAGITAALGPNDPGITRVLRIADAAGTRNVTVTKADYALDPVSDRYGAKIISEGGR
HCCCCCCEEEECCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHHHHHCCCC
NYGYLNLRTFISSADDQLRAAFADFRAQGVTDIIIDFRYNGGGLVSTANLMGDLLGAGRS
CCCEEEHHHHHCCCHHHHHHHHHHHHHCCCEEEEEEEEECCCCEEEHHHHHHHHHCCCCC
GQIFSQTIFRSSKSAENDEHRFAPRSESIAPTRIAFIGTGSTASASELVINSMLPYLGTS
CCHHHHHHHHCCCCCCCCHHCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCC
MTLVGSNTFGKPVGQIALDRAECDDRMRVVAFATGNAAGQSDYYDGLAPKIANSCAAGDD
EEEEECCCCCCCHHHHHCCHHCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCC
LNIPLGDPREASIRTAIDFLAGNACPTRIAEASVGAASRSSGARMSAEPEMLVPDRPSAA
CCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCEECCCCCCHH
QRELPGLF
HHHCCCCC
>Mature Secondary Structure
MMMKSRQSLAAVTLAALLLTSCGGGGDSSLGSGGPVTVTPTPSPTPAPTANCALAARQSF
CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHH
AKAVIDEWYLFPGDVAVGVNPASFGDVQSYIDALVAPARALNKDRFFTYITSIAEENAFF
HHHHHHHHEECCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCC
SSGSSAGFGVRLVYDAANQRLLIAEAYESAPAFAAGIDRGTAIVAIGTTASNLRSIADIV
CCCCCCCCEEEEEEECCCCEEEEEEHHCCCCCHHHCCCCCCEEEEECCCHHHHHHHHHHH
AAEGTAGITAALGPNDPGITRVLRIADAAGTRNVTVTKADYALDPVSDRYGAKIISEGGR
HCCCCCCEEEECCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHHHHHCCCC
NYGYLNLRTFISSADDQLRAAFADFRAQGVTDIIIDFRYNGGGLVSTANLMGDLLGAGRS
CCCEEEHHHHHCCCHHHHHHHHHHHHHCCCEEEEEEEEECCCCEEEHHHHHHHHHCCCCC
GQIFSQTIFRSSKSAENDEHRFAPRSESIAPTRIAFIGTGSTASASELVINSMLPYLGTS
CCHHHHHHHHCCCCCCCCHHCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCC
MTLVGSNTFGKPVGQIALDRAECDDRMRVVAFATGNAAGQSDYYDGLAPKIANSCAAGDD
EEEEECCCCCCCHHHHHCCHHCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCC
LNIPLGDPREASIRTAIDFLAGNACPTRIAEASVGAASRSSGARMSAEPEMLVPDRPSAA
CCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCEECCCCCCHH
QRELPGLF
HHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: Cleavage of the C-terminal peptide from the precursor form of penicillin-binding protein 3 [C]

General reaction: Hydrolase; Acting on peptide bonds (Peptidases) [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA