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The map label for this gene is 103488157

Identifier: 103488157

GI number: 103488157

Start: 2826004

End: 2826528

Strand: Direct

Name: 103488157

Synonym: Sala_2680

Alternate gene names: NA

Gene position: 2826004-2826528 (Clockwise)

Preceding gene: 103488156

Following gene: 103488158

Centisome position: 84.48

GC content: 61.33

Gene sequence:

>525_bases
ATGAAGTCGGACGAGCCATCGCTTGCCCGCCTTATGGCAATGGCGCAGCGGGGCGACCGACTGGCCTATCGCACGCTACT
GATCGAATGCCGGGTCTGGCTCAGGCGATATTTTGGCCGGAAAGTGGCGCCAAATCATCTGGAAGACCTGGTGCAGGATA
CGTTGCTGTCGCTGCACAGCAAGCTGGCTACCTATGATCCATCCCGCCCCTTCCTCCCCTGGCTCGCCGCGATCGCCCGC
TATCGTTGGGTCGATCAATTGCGCCGCGTCTATCGCGCAGCGGAAATGGAGCTTGAGGAGGAGTTGATCGGAAGCAACGA
CGAGCCGGCGATCGTCGCGCGCATCAGCCTCGAAAGGCTTTTCGCGCAGTTGCCGTCGGCGCAGGCCCGGGCGATTGAGC
TGGTCAAGATCGAAGGGCTGTCCGTCGCCGAGGCATCCCTGGCCTGCGGGCAAAGCGAGTCCCTGATAAAAGTCAACATC
CACCGTGGCCTGAAGAGATTGGCCGCGATGATCGAGAAAGCGTGA

Upstream 100 bases:

>100_bases
TTTGGTTTGCCATGGCGCTCATCCTCATCGTTCGCGGCGGCGGGTGGCTGTCACTCGATTCGGTGTTGGTCCGCAGGCTG
CGGGGCGACCGGGCAGCAGC

Downstream 100 bases:

>100_bases
AAACATGTCCCGCGATAGCAATTTCCTGATTACCGAACTGGTCGGCGGACTCGAGCCGATACGACCGCTGCGCTTTTCAA
GCGGGCTTGGCTTCGCCCTG

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma-24 Subunit ECF Subfamily; Sigma-; RNA Polymerase ECF-Type Sigma Factor; RNA Polymerase Sigma-70 Factor; ECF Subfamily RNA Polymerase Sigma-24 Subunit; RNA Polymerase Sigma Factor Protein; RNA Polymerase Sigma-E Factor Protein; ECF-Family RNA Polymerase Sigma Factor; RNA Polymerase Sigma Q Factor; Extracytoplasmic Function AlteRNAtive Sigma Factor; RNA Polymerase ECF-Subfamily Sigma Factor; RNA Polymerase Sigma-24 Subunit ECF Subfamily Protein; RNA Polymerase Sigma-24 Factor; ECF-Type Sigma Factor; DNA-Directed RNA Polymeracialized Sigma Subunit; RNA Polymerase Sigma Factor NccH; RNA Polymerase Sigma Factor Sigma-70 Family; ECF Family RNA Polymerase Sigma Factor; Sigma-70 Family RNA Polymerase Sigma Factor

Number of amino acids: Translated: 174; Mature: 174

Protein sequence:

>174_residues
MKSDEPSLARLMAMAQRGDRLAYRTLLIECRVWLRRYFGRKVAPNHLEDLVQDTLLSLHSKLATYDPSRPFLPWLAAIAR
YRWVDQLRRVYRAAEMELEEELIGSNDEPAIVARISLERLFAQLPSAQARAIELVKIEGLSVAEASLACGQSESLIKVNI
HRGLKRLAAMIEKA

Sequences:

>Translated_174_residues
MKSDEPSLARLMAMAQRGDRLAYRTLLIECRVWLRRYFGRKVAPNHLEDLVQDTLLSLHSKLATYDPSRPFLPWLAAIAR
YRWVDQLRRVYRAAEMELEEELIGSNDEPAIVARISLERLFAQLPSAQARAIELVKIEGLSVAEASLACGQSESLIKVNI
HRGLKRLAAMIEKA
>Mature_174_residues
MKSDEPSLARLMAMAQRGDRLAYRTLLIECRVWLRRYFGRKVAPNHLEDLVQDTLLSLHSKLATYDPSRPFLPWLAAIAR
YRWVDQLRRVYRAAEMELEEELIGSNDEPAIVARISLERLFAQLPSAQARAIELVKIEGLSVAEASLACGQSESLIKVNI
HRGLKRLAAMIEKA

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19797; Mature: 19797

Theoretical pI: Translated: 9.48; Mature: 9.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSDEPSLARLMAMAQRGDRLAYRTLLIECRVWLRRYFGRKVAPNHLEDLVQDTLLSLHS
CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
KLATYDPSRPFLPWLAAIARYRWVDQLRRVYRAAEMELEEELIGSNDEPAIVARISLERL
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
FAQLPSAQARAIELVKIEGLSVAEASLACGQSESLIKVNIHRGLKRLAAMIEKA
HHHCCCCHHHHHHHHEECCCCHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKSDEPSLARLMAMAQRGDRLAYRTLLIECRVWLRRYFGRKVAPNHLEDLVQDTLLSLHS
CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
KLATYDPSRPFLPWLAAIARYRWVDQLRRVYRAAEMELEEELIGSNDEPAIVARISLERL
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
FAQLPSAQARAIELVKIEGLSVAEASLACGQSESLIKVNIHRGLKRLAAMIEKA
HHHCCCCHHHHHHHHEECCCCHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA