Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

Click here to switch to the map view.

The map label for this gene is 103488156

Identifier: 103488156

GI number: 103488156

Start: 2825537

End: 2826007

Strand: Direct

Name: 103488156

Synonym: Sala_2679

Alternate gene names: NA

Gene position: 2825537-2826007 (Clockwise)

Preceding gene: 103488155

Following gene: 103488157

Centisome position: 84.47

GC content: 57.96

Gene sequence:

>471_bases
ATGCTGGTTGTTACGCTTTACGATCGGGTTATCAACTGGGTAGCGGGACGGATTCCCGAAGGCTTCGCGCTGTTATTCAT
GCGCGTGGTGCTGGCAGGAATCTTCTGGCGATCCGGCCAGACCAAGATTGCCGAGGGCACATGGTTCACAATCAGCGAAA
ATACCTTTTACCTTTTTCAGGACGAGTATAGCGGGGTGCCGCTGCCCAGCGATCTTGCCGCCGTGATGGCCACGGTCTCC
GAGCATCTGTTTCCGATTTTGCTCGTGCTCGGCCTGTTCACCCGGCTTTCGGCCTTTGCACTGCTGGGCATGACAATGGT
GATCCAGATCTTTGTTTATCCCGATGCCTGGTGGCAGGTGCATTCGCTTTGGTTTGCCATGGCGCTCATCCTCATCGTTC
GCGGCGGCGGGTGGCTGTCACTCGATTCGGTGTTGGTCCGCAGGCTGCGGGGCGACCGGGCAGCAGCATGA

Upstream 100 bases:

>100_bases
CGCCGAACCCGAAGACGAAGACCATTTGCCGCCTGATGACATCATAACCGCGCTTGTAGCGCTGATGGAGGCTGGGGCAT
TACAAGGGGTGGAATAGGCG

Downstream 100 bases:

>100_bases
AGTCGGACGAGCCATCGCTTGCCCGCCTTATGGCAATGGCGCAGCGGGGCGACCGACTGGCCTATCGCACGCTACTGATC
GAATGCCGGGTCTGGCTCAG

Product: DoxX

Products: NA

Alternate protein names: Transmembrane Protein; DoxX Subfamily; ThiosulphateQuinone Oxidoreductase; Integral Membrane Protein; DoxD Domain-Containing Protein

Number of amino acids: Translated: 156; Mature: 156

Protein sequence:

>156_residues
MLVVTLYDRVINWVAGRIPEGFALLFMRVVLAGIFWRSGQTKIAEGTWFTISENTFYLFQDEYSGVPLPSDLAAVMATVS
EHLFPILLVLGLFTRLSAFALLGMTMVIQIFVYPDAWWQVHSLWFAMALILIVRGGGWLSLDSVLVRRLRGDRAAA

Sequences:

>Translated_156_residues
MLVVTLYDRVINWVAGRIPEGFALLFMRVVLAGIFWRSGQTKIAEGTWFTISENTFYLFQDEYSGVPLPSDLAAVMATVS
EHLFPILLVLGLFTRLSAFALLGMTMVIQIFVYPDAWWQVHSLWFAMALILIVRGGGWLSLDSVLVRRLRGDRAAA
>Mature_156_residues
MLVVTLYDRVINWVAGRIPEGFALLFMRVVLAGIFWRSGQTKIAEGTWFTISENTFYLFQDEYSGVPLPSDLAAVMATVS
EHLFPILLVLGLFTRLSAFALLGMTMVIQIFVYPDAWWQVHSLWFAMALILIVRGGGWLSLDSVLVRRLRGDRAAA

Specific function: Unknown

COG id: COG2259

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17571; Mature: 17571

Theoretical pI: Translated: 7.69; Mature: 7.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVVTLYDRVINWVAGRIPEGFALLFMRVVLAGIFWRSGQTKIAEGTWFTISENTFYLFQ
CEEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEECCEEEEEECCEEEEEE
DEYSGVPLPSDLAAVMATVSEHLFPILLVLGLFTRLSAFALLGMTMVIQIFVYPDAWWQV
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
HSLWFAMALILIVRGGGWLSLDSVLVRRLRGDRAAA
HHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MLVVTLYDRVINWVAGRIPEGFALLFMRVVLAGIFWRSGQTKIAEGTWFTISENTFYLFQ
CEEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEECCEEEEEECCEEEEEE
DEYSGVPLPSDLAAVMATVSEHLFPILLVLGLFTRLSAFALLGMTMVIQIFVYPDAWWQV
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
HSLWFAMALILIVRGGGWLSLDSVLVRRLRGDRAAA
HHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA