| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
Click here to switch to the map view.
The map label for this gene is ywbL [H]
Identifier: 103488039
GI number: 103488039
Start: 2700238
End: 2702181
Strand: Direct
Name: ywbL [H]
Synonym: Sala_2561
Alternate gene names: 103488039
Gene position: 2700238-2702181 (Clockwise)
Preceding gene: 103488038
Following gene: 103488041
Centisome position: 80.72
GC content: 66.62
Gene sequence:
>1944_bases GTGGTCCTGCTTTTCCGTCTTCGCCTGTTCACTCTTCTTCTTGTAGCGCTGGGCGGCATCATGCTCTCTCCGGTAGCTGC GCGAGCACAAGGCGGCGAGGTTCAGACCGTTTGGCGGCTTCTCGACTATGTGGCTGTCGACTATGCCGGAGCAGTGTCGG GCGGCCGCGTCACGAGCACGACTGAATATGCCGAGATGACCGAATTCTCGGCGACGATCCGGACCGGCATCGCGGCCCTT CCTTCGAAGCCCGGACGGGCCAGGCTGATCGGCGAGGCACAGGGGCTTGAGGCCGCCATCGCTTCAAAGGCAGCGCCGGA AGTGGTGGCGCAGAAGGCGCGAGCTTTGGCGAGCGATCTGCTGGCCGCCTATCCGGTGCCACTTGCGCCCGCCAAGGCGC CCGATCCTGCACGCGGCAGGGCGCTCTACGCCGAGAATTGCGCGAGCTGCCACGGCGCCAAGGGCGACGGCCGCGGTCCG CAGGCGGTTGGAATGGATCCGCCGCCGATCGCCTTCACCGACGCTGAGCGTGGGCGCAAACGCAGCCTGTTCGCGCTCTA TCAGGTGATCGACCAAGGGCTCGACGGCACGGCCATGCAGAGCTTTGCGCATCTGCCATCGGAAGACCGCTGGGCGCTTG CAGCCTATGTCGGTGGTTTCGCGTTCAAGGACGCGGCGGCGGGCGAGCGCATGTGGAAGAGCAACGCCGCCCTGCGCCAG CGCTTCCCCGATCTCCAGGCCTTCACCAGCATGACGCCGGAGGAACTCGGCCGCGCTATAGGGCAGAATAAGGCGGATGC CGTCATCGCCTATCTGCGGGCGAAACCGCAGGAGCTGAGCGCGCCGACGCCCGCATCGCTGGCGGTCGCGCGGGAAAGGC TCGCGCAGAGCCTTGCCGCCTATCGCGCGGGCGACAGGCGCAACGCCGAGCGGCTTGCACTCTCGGCCTATCTCGATGGG TTCGAGCCGGTGGAGCCGATCCTCACTGCCCGCGACGCGACGCTGATGGCGCGCATCGAGGGCGCGATGGGCGAGTTCCG GACCGCGATCGGTCGCGGTGAGCCGGCTGAGGTACTCGCCGACAAGGCCGCCGTGATCGATGGTCTGTTCGCAGACGCAG AGACCGTGCTGTCGCCCGATGCGGCGAGCGACGTCTCGACCTTCATCGGCGCGCTCACCATTTTGCTGCGCGAAGGGCTC GAGGCGCTGCTGATCGTCGTCGCGATGATCGCCTTTCTCCGCAAGGCCGACCGGCCGGAAGTTCTGCCCTTTGTCCATGG CGGATGGATCGCCGCGCTCGTTGCGGGCGGCGCGACCTGGGCGGTTGCGACCTATGCGATCTCGATCAGCGGCGCGAGCC GCGAACTCACCGAAGGGTTCGGTTCACTCTTCGCGGCGGTGGTGCTGGTTTCGGTCGGCATCTGGATGCACGGCAAGTCG CATGCCGAAAGCTGGCAACGCTATATCCGCGAAGCGCTCGGCAAGGCATTGTCGCGCCGCTCGGCCTGGTTCCTGTTCGG ACTCGCCTTTCTCGTCGTCTATCGAGAGGCGTTCGAGACGATCCTGTTCTTCGCGGCGCTGGCGGCGCAAGGGCGCGGCA GCGTCATCGCGGCAGGTGCTGCAACCGCGGTCGCGGTGCTCGCCGTGGTTGCCTGGGCAATGCTGCGTTACAGCCGCTCG CTGCCAATCGGGAAGTTCTTCGGCTACAGCTCGGTGCTCATCGCCATCCTAGCAGTGGTGCTCGCCGGCAAGGGTACGGC CGCGCTCCAGGAGGCCGGGCTCATCGATATCACGCCGGTCGCGCATGTGCCGAGGCTCTCGATGCTCGGCATCTTCCCGT CATTGCAACCGCTGCTGCTCCAGCTTCTCGCGCTCGCGATCCTGTGTGTTGGCTTCTGGTATAACGGGCGAAGGCATGCA GCAGGCACGGCCGCGGCTGAGTAG
Upstream 100 bases:
>100_bases TCGCGGCCCTCTTCCTCCACTCCGCCTATGAAATCCTCCGCGGCGCGCGTACCGAGCTGCGCGAGTTGACGCAGACGGCT TGATCTTTGGAGTTCACTGC
Downstream 100 bases:
>100_bases AAGCATCTTGTGATGGCACCGTGTCGCTCAACCAGCGTCCGCAGAAAGCGTCTCGATCAAGGGGCATCCAGCATGCTCGC CCGCATCACACGCTCGCACG
Product: iron permease FTR1
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 647; Mature: 647
Protein sequence:
>647_residues MVLLFRLRLFTLLLVALGGIMLSPVAARAQGGEVQTVWRLLDYVAVDYAGAVSGGRVTSTTEYAEMTEFSATIRTGIAAL PSKPGRARLIGEAQGLEAAIASKAAPEVVAQKARALASDLLAAYPVPLAPAKAPDPARGRALYAENCASCHGAKGDGRGP QAVGMDPPPIAFTDAERGRKRSLFALYQVIDQGLDGTAMQSFAHLPSEDRWALAAYVGGFAFKDAAAGERMWKSNAALRQ RFPDLQAFTSMTPEELGRAIGQNKADAVIAYLRAKPQELSAPTPASLAVARERLAQSLAAYRAGDRRNAERLALSAYLDG FEPVEPILTARDATLMARIEGAMGEFRTAIGRGEPAEVLADKAAVIDGLFADAETVLSPDAASDVSTFIGALTILLREGL EALLIVVAMIAFLRKADRPEVLPFVHGGWIAALVAGGATWAVATYAISISGASRELTEGFGSLFAAVVLVSVGIWMHGKS HAESWQRYIREALGKALSRRSAWFLFGLAFLVVYREAFETILFFAALAAQGRGSVIAAGAATAVAVLAVVAWAMLRYSRS LPIGKFFGYSSVLIAILAVVLAGKGTAALQEAGLIDITPVAHVPRLSMLGIFPSLQPLLLQLLALAILCVGFWYNGRRHA AGTAAAE
Sequences:
>Translated_647_residues MVLLFRLRLFTLLLVALGGIMLSPVAARAQGGEVQTVWRLLDYVAVDYAGAVSGGRVTSTTEYAEMTEFSATIRTGIAAL PSKPGRARLIGEAQGLEAAIASKAAPEVVAQKARALASDLLAAYPVPLAPAKAPDPARGRALYAENCASCHGAKGDGRGP QAVGMDPPPIAFTDAERGRKRSLFALYQVIDQGLDGTAMQSFAHLPSEDRWALAAYVGGFAFKDAAAGERMWKSNAALRQ RFPDLQAFTSMTPEELGRAIGQNKADAVIAYLRAKPQELSAPTPASLAVARERLAQSLAAYRAGDRRNAERLALSAYLDG FEPVEPILTARDATLMARIEGAMGEFRTAIGRGEPAEVLADKAAVIDGLFADAETVLSPDAASDVSTFIGALTILLREGL EALLIVVAMIAFLRKADRPEVLPFVHGGWIAALVAGGATWAVATYAISISGASRELTEGFGSLFAAVVLVSVGIWMHGKS HAESWQRYIREALGKALSRRSAWFLFGLAFLVVYREAFETILFFAALAAQGRGSVIAAGAATAVAVLAVVAWAMLRYSRS LPIGKFFGYSSVLIAILAVVLAGKGTAALQEAGLIDITPVAHVPRLSMLGIFPSLQPLLLQLLALAILCVGFWYNGRRHA AGTAAAE >Mature_647_residues MVLLFRLRLFTLLLVALGGIMLSPVAARAQGGEVQTVWRLLDYVAVDYAGAVSGGRVTSTTEYAEMTEFSATIRTGIAAL PSKPGRARLIGEAQGLEAAIASKAAPEVVAQKARALASDLLAAYPVPLAPAKAPDPARGRALYAENCASCHGAKGDGRGP QAVGMDPPPIAFTDAERGRKRSLFALYQVIDQGLDGTAMQSFAHLPSEDRWALAAYVGGFAFKDAAAGERMWKSNAALRQ RFPDLQAFTSMTPEELGRAIGQNKADAVIAYLRAKPQELSAPTPASLAVARERLAQSLAAYRAGDRRNAERLALSAYLDG FEPVEPILTARDATLMARIEGAMGEFRTAIGRGEPAEVLADKAAVIDGLFADAETVLSPDAASDVSTFIGALTILLREGL EALLIVVAMIAFLRKADRPEVLPFVHGGWIAALVAGGATWAVATYAISISGASRELTEGFGSLFAAVVLVSVGIWMHGKS HAESWQRYIREALGKALSRRSAWFLFGLAFLVVYREAFETILFFAALAAQGRGSVIAAGAATAVAVLAVVAWAMLRYSRS LPIGKFFGYSSVLIAILAVVLAGKGTAALQEAGLIDITPVAHVPRLSMLGIFPSLQPLLLQLLALAILCVGFWYNGRRHA AGTAAAE
Specific function: Unknown
COG id: COG0672
COG function: function code P; High-affinity Fe2+/Pb2+ permease
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the oxidase-dependent Fe transporter (OFeT) (TC 9.A.10.1) family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005217 - InterPro: IPR004923 [H]
Pfam domain/function: PF03239 FTR1 [H]
EC number: NA
Molecular weight: Translated: 68334; Mature: 68334
Theoretical pI: Translated: 9.11; Mature: 9.11
Prosite motif: PS51007 CYTC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVLLFRLRLFTLLLVALGGIMLSPVAARAQGGEVQTVWRLLDYVAVDYAGAVSGGRVTST CEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC TEYAEMTEFSATIRTGIAALPSKPGRARLIGEAQGLEAAIASKAAPEVVAQKARALASDL HHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHCHHHHHHHHCCHHHHHHHHHHHHHHH LAAYPVPLAPAKAPDPARGRALYAENCASCHGAKGDGRGPQAVGMDPPPIAFTDAERGRK HHHCCCCCCCCCCCCCCCCCEEHHHHHHHHCCCCCCCCCCCCCCCCCCCCEECCCCCCHH RSLFALYQVIDQGLDGTAMQSFAHLPSEDRWALAAYVGGFAFKDAAAGERMWKSNAALRQ HHHHHHHHHHHCCCCCHHHHHHHCCCCCCCEEHHHHHCCHHHHHHHHHHHHHHHHHHHHH RFPDLQAFTSMTPEELGRAIGQNKADAVIAYLRAKPQELSAPTPASLAVARERLAQSLAA HCCCHHHHHCCCHHHHHHHHCCCHHHHHHHHHHCCCHHCCCCCCHHHHHHHHHHHHHHHH YRAGDRRNAERLALSAYLDGFEPVEPILTARDATLMARIEGAMGEFRTAIGRGEPAEVLA HHCCCCCCHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHH DKAAVIDGLFADAETVLSPDAASDVSTFIGALTILLREGLEALLIVVAMIAFLRKADRPE HHHHHHHHHHHCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC VLPFVHGGWIAALVAGGATWAVATYAISISGASRELTEGFGSLFAAVVLVSVGIWMHGKS CCCEECCHHHHHHHHCCCHHEEHHHEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCH HAESWQRYIREALGKALSRRSAWFLFGLAFLVVYREAFETILFFAALAAQGRGSVIAAGA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECHH ATAVAVLAVVAWAMLRYSRSLPIGKFFGYSSVLIAILAVVLAGKGTAALQEAGLIDITPV HHHHHHHHHHHHHHHHHHCCCCCHHHHCHHHHHHHHHHHHHCCCCHHHHHHCCCEEECCH AHVPRLSMLGIFPSLQPLLLQLLALAILCVGFWYNGRRHAAGTAAAE HHCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC >Mature Secondary Structure MVLLFRLRLFTLLLVALGGIMLSPVAARAQGGEVQTVWRLLDYVAVDYAGAVSGGRVTST CEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC TEYAEMTEFSATIRTGIAALPSKPGRARLIGEAQGLEAAIASKAAPEVVAQKARALASDL HHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHCHHHHHHHHCCHHHHHHHHHHHHHHH LAAYPVPLAPAKAPDPARGRALYAENCASCHGAKGDGRGPQAVGMDPPPIAFTDAERGRK HHHCCCCCCCCCCCCCCCCCEEHHHHHHHHCCCCCCCCCCCCCCCCCCCCEECCCCCCHH RSLFALYQVIDQGLDGTAMQSFAHLPSEDRWALAAYVGGFAFKDAAAGERMWKSNAALRQ HHHHHHHHHHHCCCCCHHHHHHHCCCCCCCEEHHHHHCCHHHHHHHHHHHHHHHHHHHHH RFPDLQAFTSMTPEELGRAIGQNKADAVIAYLRAKPQELSAPTPASLAVARERLAQSLAA HCCCHHHHHCCCHHHHHHHHCCCHHHHHHHHHHCCCHHCCCCCCHHHHHHHHHHHHHHHH YRAGDRRNAERLALSAYLDGFEPVEPILTARDATLMARIEGAMGEFRTAIGRGEPAEVLA HHCCCCCCHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHH DKAAVIDGLFADAETVLSPDAASDVSTFIGALTILLREGLEALLIVVAMIAFLRKADRPE HHHHHHHHHHHCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC VLPFVHGGWIAALVAGGATWAVATYAISISGASRELTEGFGSLFAAVVLVSVGIWMHGKS CCCEECCHHHHHHHHCCCHHEEHHHEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCH HAESWQRYIREALGKALSRRSAWFLFGLAFLVVYREAFETILFFAALAAQGRGSVIAAGA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECHH ATAVAVLAVVAWAMLRYSRSLPIGKFFGYSSVLIAILAVVLAGKGTAALQEAGLIDITPV HHHHHHHHHHHHHHHHHHCCCCCHHHHCHHHHHHHHHHHHHCCCCHHHHHHCCCEEECCH AHVPRLSMLGIFPSLQPLLLQLLALAILCVGFWYNGRRHAAGTAAAE HHCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7934828; 9384377 [H]