Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

Click here to switch to the map view.

The map label for this gene is ywbL [H]

Identifier: 103488039

GI number: 103488039

Start: 2700238

End: 2702181

Strand: Direct

Name: ywbL [H]

Synonym: Sala_2561

Alternate gene names: 103488039

Gene position: 2700238-2702181 (Clockwise)

Preceding gene: 103488038

Following gene: 103488041

Centisome position: 80.72

GC content: 66.62

Gene sequence:

>1944_bases
GTGGTCCTGCTTTTCCGTCTTCGCCTGTTCACTCTTCTTCTTGTAGCGCTGGGCGGCATCATGCTCTCTCCGGTAGCTGC
GCGAGCACAAGGCGGCGAGGTTCAGACCGTTTGGCGGCTTCTCGACTATGTGGCTGTCGACTATGCCGGAGCAGTGTCGG
GCGGCCGCGTCACGAGCACGACTGAATATGCCGAGATGACCGAATTCTCGGCGACGATCCGGACCGGCATCGCGGCCCTT
CCTTCGAAGCCCGGACGGGCCAGGCTGATCGGCGAGGCACAGGGGCTTGAGGCCGCCATCGCTTCAAAGGCAGCGCCGGA
AGTGGTGGCGCAGAAGGCGCGAGCTTTGGCGAGCGATCTGCTGGCCGCCTATCCGGTGCCACTTGCGCCCGCCAAGGCGC
CCGATCCTGCACGCGGCAGGGCGCTCTACGCCGAGAATTGCGCGAGCTGCCACGGCGCCAAGGGCGACGGCCGCGGTCCG
CAGGCGGTTGGAATGGATCCGCCGCCGATCGCCTTCACCGACGCTGAGCGTGGGCGCAAACGCAGCCTGTTCGCGCTCTA
TCAGGTGATCGACCAAGGGCTCGACGGCACGGCCATGCAGAGCTTTGCGCATCTGCCATCGGAAGACCGCTGGGCGCTTG
CAGCCTATGTCGGTGGTTTCGCGTTCAAGGACGCGGCGGCGGGCGAGCGCATGTGGAAGAGCAACGCCGCCCTGCGCCAG
CGCTTCCCCGATCTCCAGGCCTTCACCAGCATGACGCCGGAGGAACTCGGCCGCGCTATAGGGCAGAATAAGGCGGATGC
CGTCATCGCCTATCTGCGGGCGAAACCGCAGGAGCTGAGCGCGCCGACGCCCGCATCGCTGGCGGTCGCGCGGGAAAGGC
TCGCGCAGAGCCTTGCCGCCTATCGCGCGGGCGACAGGCGCAACGCCGAGCGGCTTGCACTCTCGGCCTATCTCGATGGG
TTCGAGCCGGTGGAGCCGATCCTCACTGCCCGCGACGCGACGCTGATGGCGCGCATCGAGGGCGCGATGGGCGAGTTCCG
GACCGCGATCGGTCGCGGTGAGCCGGCTGAGGTACTCGCCGACAAGGCCGCCGTGATCGATGGTCTGTTCGCAGACGCAG
AGACCGTGCTGTCGCCCGATGCGGCGAGCGACGTCTCGACCTTCATCGGCGCGCTCACCATTTTGCTGCGCGAAGGGCTC
GAGGCGCTGCTGATCGTCGTCGCGATGATCGCCTTTCTCCGCAAGGCCGACCGGCCGGAAGTTCTGCCCTTTGTCCATGG
CGGATGGATCGCCGCGCTCGTTGCGGGCGGCGCGACCTGGGCGGTTGCGACCTATGCGATCTCGATCAGCGGCGCGAGCC
GCGAACTCACCGAAGGGTTCGGTTCACTCTTCGCGGCGGTGGTGCTGGTTTCGGTCGGCATCTGGATGCACGGCAAGTCG
CATGCCGAAAGCTGGCAACGCTATATCCGCGAAGCGCTCGGCAAGGCATTGTCGCGCCGCTCGGCCTGGTTCCTGTTCGG
ACTCGCCTTTCTCGTCGTCTATCGAGAGGCGTTCGAGACGATCCTGTTCTTCGCGGCGCTGGCGGCGCAAGGGCGCGGCA
GCGTCATCGCGGCAGGTGCTGCAACCGCGGTCGCGGTGCTCGCCGTGGTTGCCTGGGCAATGCTGCGTTACAGCCGCTCG
CTGCCAATCGGGAAGTTCTTCGGCTACAGCTCGGTGCTCATCGCCATCCTAGCAGTGGTGCTCGCCGGCAAGGGTACGGC
CGCGCTCCAGGAGGCCGGGCTCATCGATATCACGCCGGTCGCGCATGTGCCGAGGCTCTCGATGCTCGGCATCTTCCCGT
CATTGCAACCGCTGCTGCTCCAGCTTCTCGCGCTCGCGATCCTGTGTGTTGGCTTCTGGTATAACGGGCGAAGGCATGCA
GCAGGCACGGCCGCGGCTGAGTAG

Upstream 100 bases:

>100_bases
TCGCGGCCCTCTTCCTCCACTCCGCCTATGAAATCCTCCGCGGCGCGCGTACCGAGCTGCGCGAGTTGACGCAGACGGCT
TGATCTTTGGAGTTCACTGC

Downstream 100 bases:

>100_bases
AAGCATCTTGTGATGGCACCGTGTCGCTCAACCAGCGTCCGCAGAAAGCGTCTCGATCAAGGGGCATCCAGCATGCTCGC
CCGCATCACACGCTCGCACG

Product: iron permease FTR1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 647; Mature: 647

Protein sequence:

>647_residues
MVLLFRLRLFTLLLVALGGIMLSPVAARAQGGEVQTVWRLLDYVAVDYAGAVSGGRVTSTTEYAEMTEFSATIRTGIAAL
PSKPGRARLIGEAQGLEAAIASKAAPEVVAQKARALASDLLAAYPVPLAPAKAPDPARGRALYAENCASCHGAKGDGRGP
QAVGMDPPPIAFTDAERGRKRSLFALYQVIDQGLDGTAMQSFAHLPSEDRWALAAYVGGFAFKDAAAGERMWKSNAALRQ
RFPDLQAFTSMTPEELGRAIGQNKADAVIAYLRAKPQELSAPTPASLAVARERLAQSLAAYRAGDRRNAERLALSAYLDG
FEPVEPILTARDATLMARIEGAMGEFRTAIGRGEPAEVLADKAAVIDGLFADAETVLSPDAASDVSTFIGALTILLREGL
EALLIVVAMIAFLRKADRPEVLPFVHGGWIAALVAGGATWAVATYAISISGASRELTEGFGSLFAAVVLVSVGIWMHGKS
HAESWQRYIREALGKALSRRSAWFLFGLAFLVVYREAFETILFFAALAAQGRGSVIAAGAATAVAVLAVVAWAMLRYSRS
LPIGKFFGYSSVLIAILAVVLAGKGTAALQEAGLIDITPVAHVPRLSMLGIFPSLQPLLLQLLALAILCVGFWYNGRRHA
AGTAAAE

Sequences:

>Translated_647_residues
MVLLFRLRLFTLLLVALGGIMLSPVAARAQGGEVQTVWRLLDYVAVDYAGAVSGGRVTSTTEYAEMTEFSATIRTGIAAL
PSKPGRARLIGEAQGLEAAIASKAAPEVVAQKARALASDLLAAYPVPLAPAKAPDPARGRALYAENCASCHGAKGDGRGP
QAVGMDPPPIAFTDAERGRKRSLFALYQVIDQGLDGTAMQSFAHLPSEDRWALAAYVGGFAFKDAAAGERMWKSNAALRQ
RFPDLQAFTSMTPEELGRAIGQNKADAVIAYLRAKPQELSAPTPASLAVARERLAQSLAAYRAGDRRNAERLALSAYLDG
FEPVEPILTARDATLMARIEGAMGEFRTAIGRGEPAEVLADKAAVIDGLFADAETVLSPDAASDVSTFIGALTILLREGL
EALLIVVAMIAFLRKADRPEVLPFVHGGWIAALVAGGATWAVATYAISISGASRELTEGFGSLFAAVVLVSVGIWMHGKS
HAESWQRYIREALGKALSRRSAWFLFGLAFLVVYREAFETILFFAALAAQGRGSVIAAGAATAVAVLAVVAWAMLRYSRS
LPIGKFFGYSSVLIAILAVVLAGKGTAALQEAGLIDITPVAHVPRLSMLGIFPSLQPLLLQLLALAILCVGFWYNGRRHA
AGTAAAE
>Mature_647_residues
MVLLFRLRLFTLLLVALGGIMLSPVAARAQGGEVQTVWRLLDYVAVDYAGAVSGGRVTSTTEYAEMTEFSATIRTGIAAL
PSKPGRARLIGEAQGLEAAIASKAAPEVVAQKARALASDLLAAYPVPLAPAKAPDPARGRALYAENCASCHGAKGDGRGP
QAVGMDPPPIAFTDAERGRKRSLFALYQVIDQGLDGTAMQSFAHLPSEDRWALAAYVGGFAFKDAAAGERMWKSNAALRQ
RFPDLQAFTSMTPEELGRAIGQNKADAVIAYLRAKPQELSAPTPASLAVARERLAQSLAAYRAGDRRNAERLALSAYLDG
FEPVEPILTARDATLMARIEGAMGEFRTAIGRGEPAEVLADKAAVIDGLFADAETVLSPDAASDVSTFIGALTILLREGL
EALLIVVAMIAFLRKADRPEVLPFVHGGWIAALVAGGATWAVATYAISISGASRELTEGFGSLFAAVVLVSVGIWMHGKS
HAESWQRYIREALGKALSRRSAWFLFGLAFLVVYREAFETILFFAALAAQGRGSVIAAGAATAVAVLAVVAWAMLRYSRS
LPIGKFFGYSSVLIAILAVVLAGKGTAALQEAGLIDITPVAHVPRLSMLGIFPSLQPLLLQLLALAILCVGFWYNGRRHA
AGTAAAE

Specific function: Unknown

COG id: COG0672

COG function: function code P; High-affinity Fe2+/Pb2+ permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the oxidase-dependent Fe transporter (OFeT) (TC 9.A.10.1) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005217
- InterPro:   IPR004923 [H]

Pfam domain/function: PF03239 FTR1 [H]

EC number: NA

Molecular weight: Translated: 68334; Mature: 68334

Theoretical pI: Translated: 9.11; Mature: 9.11

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVLLFRLRLFTLLLVALGGIMLSPVAARAQGGEVQTVWRLLDYVAVDYAGAVSGGRVTST
CEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
TEYAEMTEFSATIRTGIAALPSKPGRARLIGEAQGLEAAIASKAAPEVVAQKARALASDL
HHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHCHHHHHHHHCCHHHHHHHHHHHHHHH
LAAYPVPLAPAKAPDPARGRALYAENCASCHGAKGDGRGPQAVGMDPPPIAFTDAERGRK
HHHCCCCCCCCCCCCCCCCCEEHHHHHHHHCCCCCCCCCCCCCCCCCCCCEECCCCCCHH
RSLFALYQVIDQGLDGTAMQSFAHLPSEDRWALAAYVGGFAFKDAAAGERMWKSNAALRQ
HHHHHHHHHHHCCCCCHHHHHHHCCCCCCCEEHHHHHCCHHHHHHHHHHHHHHHHHHHHH
RFPDLQAFTSMTPEELGRAIGQNKADAVIAYLRAKPQELSAPTPASLAVARERLAQSLAA
HCCCHHHHHCCCHHHHHHHHCCCHHHHHHHHHHCCCHHCCCCCCHHHHHHHHHHHHHHHH
YRAGDRRNAERLALSAYLDGFEPVEPILTARDATLMARIEGAMGEFRTAIGRGEPAEVLA
HHCCCCCCHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHH
DKAAVIDGLFADAETVLSPDAASDVSTFIGALTILLREGLEALLIVVAMIAFLRKADRPE
HHHHHHHHHHHCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
VLPFVHGGWIAALVAGGATWAVATYAISISGASRELTEGFGSLFAAVVLVSVGIWMHGKS
CCCEECCHHHHHHHHCCCHHEEHHHEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCH
HAESWQRYIREALGKALSRRSAWFLFGLAFLVVYREAFETILFFAALAAQGRGSVIAAGA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECHH
ATAVAVLAVVAWAMLRYSRSLPIGKFFGYSSVLIAILAVVLAGKGTAALQEAGLIDITPV
HHHHHHHHHHHHHHHHHHCCCCCHHHHCHHHHHHHHHHHHHCCCCHHHHHHCCCEEECCH
AHVPRLSMLGIFPSLQPLLLQLLALAILCVGFWYNGRRHAAGTAAAE
HHCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MVLLFRLRLFTLLLVALGGIMLSPVAARAQGGEVQTVWRLLDYVAVDYAGAVSGGRVTST
CEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
TEYAEMTEFSATIRTGIAALPSKPGRARLIGEAQGLEAAIASKAAPEVVAQKARALASDL
HHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHCHHHHHHHHCCHHHHHHHHHHHHHHH
LAAYPVPLAPAKAPDPARGRALYAENCASCHGAKGDGRGPQAVGMDPPPIAFTDAERGRK
HHHCCCCCCCCCCCCCCCCCEEHHHHHHHHCCCCCCCCCCCCCCCCCCCCEECCCCCCHH
RSLFALYQVIDQGLDGTAMQSFAHLPSEDRWALAAYVGGFAFKDAAAGERMWKSNAALRQ
HHHHHHHHHHHCCCCCHHHHHHHCCCCCCCEEHHHHHCCHHHHHHHHHHHHHHHHHHHHH
RFPDLQAFTSMTPEELGRAIGQNKADAVIAYLRAKPQELSAPTPASLAVARERLAQSLAA
HCCCHHHHHCCCHHHHHHHHCCCHHHHHHHHHHCCCHHCCCCCCHHHHHHHHHHHHHHHH
YRAGDRRNAERLALSAYLDGFEPVEPILTARDATLMARIEGAMGEFRTAIGRGEPAEVLA
HHCCCCCCHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHH
DKAAVIDGLFADAETVLSPDAASDVSTFIGALTILLREGLEALLIVVAMIAFLRKADRPE
HHHHHHHHHHHCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
VLPFVHGGWIAALVAGGATWAVATYAISISGASRELTEGFGSLFAAVVLVSVGIWMHGKS
CCCEECCHHHHHHHHCCCHHEEHHHEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCH
HAESWQRYIREALGKALSRRSAWFLFGLAFLVVYREAFETILFFAALAAQGRGSVIAAGA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECHH
ATAVAVLAVVAWAMLRYSRSLPIGKFFGYSSVLIAILAVVLAGKGTAALQEAGLIDITPV
HHHHHHHHHHHHHHHHHHCCCCCHHHHCHHHHHHHHHHHHHCCCCHHHHHHCCCEEECCH
AHVPRLSMLGIFPSLQPLLLQLLALAILCVGFWYNGRRHAAGTAAAE
HHCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377 [H]