| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is zitB [C]
Identifier: 103488038
GI number: 103488038
Start: 2699576
End: 2700220
Strand: Direct
Name: zitB [C]
Synonym: Sala_2560
Alternate gene names: 103488038
Gene position: 2699576-2700220 (Clockwise)
Preceding gene: 103488037
Following gene: 103488039
Centisome position: 80.7
GC content: 66.2
Gene sequence:
>645_bases ATGGTAGACTCGGATGAAGCAGGCGGCTGCGGCTGCACCGGAGACAGCGCGCGGGCGGAAAAGGATCCGGCCTACCGGCG TGCGCTGTGGATCGTCGTGCTCCTCAATCTCGGTTTCGGCGCCTGCGAGATCGTCGGCGGGTTCATTGCCGACAGCCAAG CGCTCAAGGCCGACGCGCTCGACTTCATGGGCGACGGGACGATCACGTTAGTCGGCCTGATTGCGCTCGGCTGGACTGCG GCGGCGCGCGCACGGATTGCGCTCGTTCAGGGAATATTCCTCCTCACGTTGGGTCTCGGCGTGATCGCTGTGGCGCTCTG GCGCGCCTTGACTGCTGTCGCGCCCGAAGCCGACTTGATGGGCGGCATCGGCGTCGCTGCGCTTGTCGTCAATGTCGCAT CGGCCTTCGTCTTGTCGCGCTTCCGTGAAGGGGACGCAAATGTGCGCGCGGTCTGGCTGTTCAGCCGCAACGATGCGCTC GCCAATGTTGCCGTGATCGTCGCGGCAGCGCTCGTCGCCTGGACAGGGAGCGCCTGGCCCGATCTGACGGTTGCCGCCGT GATCGCGGCCCTCTTCCTCCACTCCGCCTATGAAATCCTCCGCGGCGCGCGTACCGAGCTGCGCGAGTTGACGCAGACGG CTTGA
Upstream 100 bases:
>100_bases CGATCAGCCTGTTCCACTTCAAGGCACCCAAAAGCATATAACGCGAACCATTTGCAGAAATGCTTGCTTCTACAGTTACT GGAGGTTGTAGAAGCGGCGA
Downstream 100 bases:
>100_bases TCTTTGGAGTTCACTGCGTGGTCCTGCTTTTCCGTCTTCGCCTGTTCACTCTTCTTCTTGTAGCGCTGGGCGGCATCATG CTCTCTCCGGTAGCTGCGCG
Product: hypothetical protein
Products: NA
Alternate protein names: Co/Zn/Cd Efflux System Component; Cation Efflux Family Protein; Cation Efflux System Protein; Integral Membrane Protein; Co/Zn/Cd Efflux System Membrane Component; Cation Efflux Permease; Cation Efflux System Permease; Cation Diffusion Facilitator Family Transporter; Cation Diffusion Facilitator; Heavy Metal Detoxification Protein; Transmembrane Protein; Cobalt-Zinc-Cadmium Resistance Protein; Cation Efflux Protein ; CDF Family Heavy Metal/H(+) Antiporter; Co/Zn/Cd Efflux Protein; RND OM Export Protein; RND Efflux System Protein; Co/Zn/Cd Efflux System Protein; Zinc Transporter; CDF Family Cobalt/Cadmium/Zinc Transporter
Number of amino acids: Translated: 214; Mature: 214
Protein sequence:
>214_residues MVDSDEAGGCGCTGDSARAEKDPAYRRALWIVVLLNLGFGACEIVGGFIADSQALKADALDFMGDGTITLVGLIALGWTA AARARIALVQGIFLLTLGLGVIAVALWRALTAVAPEADLMGGIGVAALVVNVASAFVLSRFREGDANVRAVWLFSRNDAL ANVAVIVAAALVAWTGSAWPDLTVAAVIAALFLHSAYEILRGARTELRELTQTA
Sequences:
>Translated_214_residues MVDSDEAGGCGCTGDSARAEKDPAYRRALWIVVLLNLGFGACEIVGGFIADSQALKADALDFMGDGTITLVGLIALGWTA AARARIALVQGIFLLTLGLGVIAVALWRALTAVAPEADLMGGIGVAALVVNVASAFVLSRFREGDANVRAVWLFSRNDAL ANVAVIVAAALVAWTGSAWPDLTVAAVIAALFLHSAYEILRGARTELRELTQTA >Mature_214_residues MVDSDEAGGCGCTGDSARAEKDPAYRRALWIVVLLNLGFGACEIVGGFIADSQALKADALDFMGDGTITLVGLIALGWTA AARARIALVQGIFLLTLGLGVIAVALWRALTAVAPEADLMGGIGVAALVVNVASAFVLSRFREGDANVRAVWLFSRNDAL ANVAVIVAAALVAWTGSAWPDLTVAAVIAALFLHSAYEILRGARTELRELTQTA
Specific function: Involved In Zinc Efflux Across The Cytoplasmic Membrane, Thus Reducing Zinc Accumulation In The Cytoplasm And Rendering Bacteria More Resistant To Zinc. It May Contribute To Zinc Homeostasis At Low Concentrations Of Zinc, Whereas Znta Is Required For Grow
COG id: COG1230
COG function: function code P; Co/Zn/Cd efflux system component
Gene ontology:
Cell location: Integral Membrane Protein [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22197; Mature: 22197
Theoretical pI: Translated: 4.60; Mature: 4.60
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVDSDEAGGCGCTGDSARAEKDPAYRRALWIVVLLNLGFGACEIVGGFIADSQALKADAL CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHH DFMGDGTITLVGLIALGWTAAARARIALVQGIFLLTLGLGVIAVALWRALTAVAPEADLM HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH GGIGVAALVVNVASAFVLSRFREGDANVRAVWLFSRNDALANVAVIVAAALVAWTGSAWP HHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCC DLTVAAVIAALFLHSAYEILRGARTELRELTQTA CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MVDSDEAGGCGCTGDSARAEKDPAYRRALWIVVLLNLGFGACEIVGGFIADSQALKADAL CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHH DFMGDGTITLVGLIALGWTAAARARIALVQGIFLLTLGLGVIAVALWRALTAVAPEADLM HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH GGIGVAALVVNVASAFVLSRFREGDANVRAVWLFSRNDALANVAVIVAAALVAWTGSAWP HHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCC DLTVAAVIAALFLHSAYEILRGARTELRELTQTA CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA