Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103487847

Identifier: 103487847

GI number: 103487847

Start: 2490366

End: 2490821

Strand: Direct

Name: 103487847

Synonym: Sala_2366

Alternate gene names: NA

Gene position: 2490366-2490821 (Clockwise)

Preceding gene: 103487846

Following gene: 103487851

Centisome position: 74.45

GC content: 65.35

Gene sequence:

>456_bases
ATGTCCGACAAGAACACACCCGCCGTCGCCGATGCGCTCAACGCGCTGCTCGCCGACAGCTTTGCGCTCTATCTCAAGAC
CAAAAATTACCACTGGCACGTCCAGGGGCCGCGCTTTCGCGAGCTGCACCTGCTGTTCGACGAACAGGCGGCGCAGATTT
TCGCGACGACCGATCTGATCGCCGAGCGCGTGCGCAAGAATGGCGCGGCGACGCTGCGGTCGATCGGCGACATCGGCCGC
CGCGCGTCGATCCGCGACGATGATGCGGGCGGCGTCGACGCCGATACGATGATCCGCAACCTCGCCGAGGACAACAAGTT
GCTGCTCGCCCAGCTCAGGGACGTCAAAAGCGCTGCCGAGGCCGATGGCGACATCGCCACGAGCGGGCTGGTCGACGGCT
GGGCCGACGAGACGCAGCAGCGCATCTGGTTCCTCGAAGCGACGCTGGGTTACTGA

Upstream 100 bases:

>100_bases
CGGGTTTCATCGTTTTTGTCGATGAAACCCAGCCAAAGCTTCGATGGGAAAATGTCATCCGCCATCCCTATATGCGCCGG
GTAACAGAAAGGATTCTCCC

Downstream 100 bases:

>100_bases
TCGCGCTGCCCGCGCGGCCGGTTGCGGCGGCTCCATGATCGGCACCCTCACAGATGCGCCGTGACCTCTGGCGGGTTCCA
CCAATTATTGCCCGCGCCGT

Product: Ferritin and Dps

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 151; Mature: 150

Protein sequence:

>151_residues
MSDKNTPAVADALNALLADSFALYLKTKNYHWHVQGPRFRELHLLFDEQAAQIFATTDLIAERVRKNGAATLRSIGDIGR
RASIRDDDAGGVDADTMIRNLAEDNKLLLAQLRDVKSAAEADGDIATSGLVDGWADETQQRIWFLEATLGY

Sequences:

>Translated_151_residues
MSDKNTPAVADALNALLADSFALYLKTKNYHWHVQGPRFRELHLLFDEQAAQIFATTDLIAERVRKNGAATLRSIGDIGR
RASIRDDDAGGVDADTMIRNLAEDNKLLLAQLRDVKSAAEADGDIATSGLVDGWADETQQRIWFLEATLGY
>Mature_150_residues
SDKNTPAVADALNALLADSFALYLKTKNYHWHVQGPRFRELHLLFDEQAAQIFATTDLIAERVRKNGAATLRSIGDIGRR
ASIRDDDAGGVDADTMIRNLAEDNKLLLAQLRDVKSAAEADGDIATSGLVDGWADETQQRIWFLEATLGY

Specific function: Unknown

COG id: COG0783

COG function: function code P; DNA-binding ferritin-like protein (oxidative damage protectant)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dps family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002177
- InterPro:   IPR023188
- InterPro:   IPR012347
- InterPro:   IPR009078
- InterPro:   IPR008331 [H]

Pfam domain/function: PF00210 Ferritin [H]

EC number: NA

Molecular weight: Translated: 16646; Mature: 16515

Theoretical pI: Translated: 4.67; Mature: 4.67

Prosite motif: PS00818 DPS_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDKNTPAVADALNALLADSFALYLKTKNYHWHVQGPRFRELHLLFDEQAAQIFATTDLI
CCCCCCCHHHHHHHHHHHHHEEEEEEECCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
AERVRKNGAATLRSIGDIGRRASIRDDDAGGVDADTMIRNLAEDNKLLLAQLRDVKSAAE
HHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHH
ADGDIATSGLVDGWADETQQRIWFLEATLGY
CCCCCHHCCCCCCHHHHHHHHEEEEEEECCC
>Mature Secondary Structure 
SDKNTPAVADALNALLADSFALYLKTKNYHWHVQGPRFRELHLLFDEQAAQIFATTDLI
CCCCCCHHHHHHHHHHHHHEEEEEEECCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
AERVRKNGAATLRSIGDIGRRASIRDDDAGGVDADTMIRNLAEDNKLLLAQLRDVKSAAE
HHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHH
ADGDIATSGLVDGWADETQQRIWFLEATLGY
CCCCCHHCCCCCCHHHHHHHHEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA