| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
Click here to switch to the map view.
The map label for this gene is 103487847
Identifier: 103487847
GI number: 103487847
Start: 2490366
End: 2490821
Strand: Direct
Name: 103487847
Synonym: Sala_2366
Alternate gene names: NA
Gene position: 2490366-2490821 (Clockwise)
Preceding gene: 103487846
Following gene: 103487851
Centisome position: 74.45
GC content: 65.35
Gene sequence:
>456_bases ATGTCCGACAAGAACACACCCGCCGTCGCCGATGCGCTCAACGCGCTGCTCGCCGACAGCTTTGCGCTCTATCTCAAGAC CAAAAATTACCACTGGCACGTCCAGGGGCCGCGCTTTCGCGAGCTGCACCTGCTGTTCGACGAACAGGCGGCGCAGATTT TCGCGACGACCGATCTGATCGCCGAGCGCGTGCGCAAGAATGGCGCGGCGACGCTGCGGTCGATCGGCGACATCGGCCGC CGCGCGTCGATCCGCGACGATGATGCGGGCGGCGTCGACGCCGATACGATGATCCGCAACCTCGCCGAGGACAACAAGTT GCTGCTCGCCCAGCTCAGGGACGTCAAAAGCGCTGCCGAGGCCGATGGCGACATCGCCACGAGCGGGCTGGTCGACGGCT GGGCCGACGAGACGCAGCAGCGCATCTGGTTCCTCGAAGCGACGCTGGGTTACTGA
Upstream 100 bases:
>100_bases CGGGTTTCATCGTTTTTGTCGATGAAACCCAGCCAAAGCTTCGATGGGAAAATGTCATCCGCCATCCCTATATGCGCCGG GTAACAGAAAGGATTCTCCC
Downstream 100 bases:
>100_bases TCGCGCTGCCCGCGCGGCCGGTTGCGGCGGCTCCATGATCGGCACCCTCACAGATGCGCCGTGACCTCTGGCGGGTTCCA CCAATTATTGCCCGCGCCGT
Product: Ferritin and Dps
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 151; Mature: 150
Protein sequence:
>151_residues MSDKNTPAVADALNALLADSFALYLKTKNYHWHVQGPRFRELHLLFDEQAAQIFATTDLIAERVRKNGAATLRSIGDIGR RASIRDDDAGGVDADTMIRNLAEDNKLLLAQLRDVKSAAEADGDIATSGLVDGWADETQQRIWFLEATLGY
Sequences:
>Translated_151_residues MSDKNTPAVADALNALLADSFALYLKTKNYHWHVQGPRFRELHLLFDEQAAQIFATTDLIAERVRKNGAATLRSIGDIGR RASIRDDDAGGVDADTMIRNLAEDNKLLLAQLRDVKSAAEADGDIATSGLVDGWADETQQRIWFLEATLGY >Mature_150_residues SDKNTPAVADALNALLADSFALYLKTKNYHWHVQGPRFRELHLLFDEQAAQIFATTDLIAERVRKNGAATLRSIGDIGRR ASIRDDDAGGVDADTMIRNLAEDNKLLLAQLRDVKSAAEADGDIATSGLVDGWADETQQRIWFLEATLGY
Specific function: Unknown
COG id: COG0783
COG function: function code P; DNA-binding ferritin-like protein (oxidative damage protectant)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the dps family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002177 - InterPro: IPR023188 - InterPro: IPR012347 - InterPro: IPR009078 - InterPro: IPR008331 [H]
Pfam domain/function: PF00210 Ferritin [H]
EC number: NA
Molecular weight: Translated: 16646; Mature: 16515
Theoretical pI: Translated: 4.67; Mature: 4.67
Prosite motif: PS00818 DPS_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 0.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDKNTPAVADALNALLADSFALYLKTKNYHWHVQGPRFRELHLLFDEQAAQIFATTDLI CCCCCCCHHHHHHHHHHHHHEEEEEEECCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH AERVRKNGAATLRSIGDIGRRASIRDDDAGGVDADTMIRNLAEDNKLLLAQLRDVKSAAE HHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHH ADGDIATSGLVDGWADETQQRIWFLEATLGY CCCCCHHCCCCCCHHHHHHHHEEEEEEECCC >Mature Secondary Structure SDKNTPAVADALNALLADSFALYLKTKNYHWHVQGPRFRELHLLFDEQAAQIFATTDLI CCCCCCHHHHHHHHHHHHHEEEEEEECCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH AERVRKNGAATLRSIGDIGRRASIRDDDAGGVDADTMIRNLAEDNKLLLAQLRDVKSAAE HHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHH ADGDIATSGLVDGWADETQQRIWFLEATLGY CCCCCHHCCCCCCHHHHHHHHEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA