| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
Click here to switch to the map view.
The map label for this gene is yqcK [H]
Identifier: 103487819
GI number: 103487819
Start: 2465989
End: 2466474
Strand: Reverse
Name: yqcK [H]
Synonym: Sala_2338
Alternate gene names: 103487819
Gene position: 2466474-2465989 (Counterclockwise)
Preceding gene: 103487820
Following gene: 103487818
Centisome position: 73.73
GC content: 65.02
Gene sequence:
>486_bases ATGAGCCGGTTCCACATGCATGTCGGCGTTGCCGACCTCGACAAGTCGATCGCCTTTTACAGCGGGCTGTTCGGCGCGGC GCCGAGCGTGACCAAGCCCGATTATGCCAAATGGATGCTCGACGATCCGCGGATCAATTTCGCCATCTCGGTGCGCGACG GCGCGCATCGCGGGATCGAGCATGTCGGCTTGCAAGTCGAGGATGCCGATGAGCTGAAGGCGGTCTACGGCCGTTTGAAG GACGCCGGCGCCCCGGTGCTCGAAGAGGGCGCGACGACCTGTTGCTACGCCAAGTCCGAAAAAAGCTGGATCGCCGATCC CGACGGGGTGGTGTGGGAAGCCTTTCTGACCAATGGCGAGGCGACGGTGTACGGCGACAGCCCCGATTTTGCGCCGCTGG CGTCGGCCGACGCTGCCGAAGGCGCGTGTTGCGTGCCTGCGACAGTCGAGGTGCGCCCGGCGTCCGCGCCGAACGTCTGT TGCTGA
Upstream 100 bases:
>100_bases CCGCGCTCGTCGGCTTCCTCATGGAAAATTGCTGCGGCGGGGCGGTCTGTGCGCCCGCGGCGGGATGTGCCACCGAAACC AACGGCGAAAGGAAAAGCGC
Downstream 100 bases:
>100_bases CGCCGTGACCGGGGGGCTTGGCGTGCTGGTGCTCTGCACCGGCAATTCGGCGCGCAGCATCTTGGGCGAGGCGCTGGTCG GGCGCATGGGCGAAGGGCGG
Product: glyoxalase/bleomycin resistance protein/dioxygenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 161; Mature: 160
Protein sequence:
>161_residues MSRFHMHVGVADLDKSIAFYSGLFGAAPSVTKPDYAKWMLDDPRINFAISVRDGAHRGIEHVGLQVEDADELKAVYGRLK DAGAPVLEEGATTCCYAKSEKSWIADPDGVVWEAFLTNGEATVYGDSPDFAPLASADAAEGACCVPATVEVRPASAPNVC C
Sequences:
>Translated_161_residues MSRFHMHVGVADLDKSIAFYSGLFGAAPSVTKPDYAKWMLDDPRINFAISVRDGAHRGIEHVGLQVEDADELKAVYGRLK DAGAPVLEEGATTCCYAKSEKSWIADPDGVVWEAFLTNGEATVYGDSPDFAPLASADAAEGACCVPATVEVRPASAPNVC C >Mature_160_residues SRFHMHVGVADLDKSIAFYSGLFGAAPSVTKPDYAKWMLDDPRINFAISVRDGAHRGIEHVGLQVEDADELKAVYGRLKD AGAPVLEEGATTCCYAKSEKSWIADPDGVVWEAFLTNGEATVYGDSPDFAPLASADAAEGACCVPATVEVRPASAPNVCC
Specific function: Unknown
COG id: COG0346
COG function: function code E; Lactoylglutathione lyase and related lyases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To M.tuberculosis Rv2641 [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004360 [H]
Pfam domain/function: PF00903 Glyoxalase [H]
EC number: NA
Molecular weight: Translated: 17082; Mature: 16951
Theoretical pI: Translated: 4.38; Mature: 4.38
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.7 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 5.6 %Cys+Met (Translated Protein) 3.8 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRFHMHVGVADLDKSIAFYSGLFGAAPSVTKPDYAKWMLDDPRINFAISVRDGAHRGIE CCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCEEEEEEECCCCCCCHH HVGLQVEDADELKAVYGRLKDAGAPVLEEGATTCCYAKSEKSWIADPDGVVWEAFLTNGE HHCCEEECHHHHHHHHHHHHCCCCCHHHCCCCEEEEECCCCCCCCCCCCEEEEEEECCCC ATVYGDSPDFAPLASADAAEGACCVPATVEVRPASAPNVCC EEEECCCCCCCCCCCCCCCCCCEECCCEEEEECCCCCCCCC >Mature Secondary Structure SRFHMHVGVADLDKSIAFYSGLFGAAPSVTKPDYAKWMLDDPRINFAISVRDGAHRGIE CEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCEEEEEEECCCCCCCHH HVGLQVEDADELKAVYGRLKDAGAPVLEEGATTCCYAKSEKSWIADPDGVVWEAFLTNGE HHCCEEECHHHHHHHHHHHHCCCCCHHHCCCCEEEEECCCCCCCCCCCCEEEEEEECCCC ATVYGDSPDFAPLASADAAEGACCVPATVEVRPASAPNVCC EEEECCCCCCCCCCCCCCCCCCEECCCEEEEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7704261; 8969508; 9384377; 7489895 [H]