| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is fprA [H]
Identifier: 103487791
GI number: 103487791
Start: 2438001
End: 2439305
Strand: Direct
Name: fprA [H]
Synonym: Sala_2310
Alternate gene names: 103487791
Gene position: 2438001-2439305 (Clockwise)
Preceding gene: 103487790
Following gene: 103487792
Centisome position: 72.88
GC content: 68.66
Gene sequence:
>1305_bases ATGCGTCATGTCGCGATCGTCGGGTCGGGTCCGGCGGGCTATTACACCGCCGAAACATTGCAGAAGGCGGACGACATTGC GGTCGACGTCATCGATCGCCTGCCCGTTCCCTATGGCCTGATCCGCACCGGCGTCGCGCCCGATCACCAGTCGATCAAGG CGGTGTCGCGCCGTTATGAAGGCGTCGCGCTGACCGACAATGTCCGCTTCGTCGGCCATGTCGCGGTCGGTGCCGACGTC AGTATCGCGGAGCTGGTCGCACTGTATGACGCGGTCATTCTCGCGACCGGCGCGCCGAACGACCGACCGCTGGGCATTCC CGGCGCCGATCTGCGCGGGGTGATCGGCAGCGCCGCTTTCGTCGGCTGGTACAACGGCCATCCCGATTTCGCGCATCTCG ATCCGCCGCTCGATGCCCCAGGCGTCGCGGTGATCGGCAACGGCAATGTCGCGCTCGACGTCGCGCGCATCCTCGCCAAG ACGTCCGCCGAGTTCGCCGGTAGCGACATCGTCGCGCACGCGCGCACGGCGCTCGCGGCCAGCGGTGTGCGGCATATCCA CATCCTCGGCCGCCGTGGCCCGCACCAGATCGCGATGACGCCCAAGGAGCTTGGCGAACTGGCGCACCTTGAGCGCGCGA GCCCGCGCGTCGACCCCGCCGACCTGCCCGACGAGGGCGGCGACGCGCTGCTCGAACCGGGGATGCGCAAGTCGGTGACG CATCTGCGCAGCTTTGCCGCCAATCCGGTCGCCAAACCGGTGACGATCGACTTCGATTTTTTCGCCATGCCCGTCGCGAT CGAGGGCACGCACGAAAATGGCGGCCGTGTCCAGCGCGTGATCGTCGAACGAACCGAACTCGACGCCGATCTGCGCAGCC ACGGCACGGGCGAAACCTACGCCATCGACGCGGGGCTGGTGATCAGCTGCATCGGATACCAGACCCCGCCGATCCCTGGT GTGCCCTATGAGCATGGCCGCGGCCGCTTTGCCAATGACGAGGGGCGGATATTGCCTGGTCTCTATTGCGTCGGCTGGGC GCGGCGCGGACCATCGGGGACGATCGGCACCAACAAGCCCGATGGCGCGCGCGTCGCCGAAATGGTGCTGGAGGATATCG GTCGCGGTGCGGGCAAGGTGGGGCGGCCGGGGCTCGACGCGCTGCTCGCCAGCCGCGGCATCGCGCCCGTCACCTTCCGC GACTGGCGCCGGATCGACGCGGCGGAGGTGGCCGCCGCGCTCGACGGGAGCCCGCGCGAAAAGTTCACCAGCGTCGAGGC GATGCTCGCCGCGATCGGACGGTGA
Upstream 100 bases:
>100_bases TCGGCAACAGTCTGCTTGCCCTGCCGCATTTCGCCGCTAGCATCGCCCGCATAACAAGGGGGCCGCGTCGCGGCGCAGGC ACCTGCATAGGAGTGGGCTG
Downstream 100 bases:
>100_bases GGCAGCGCATCCGCACCGCGCTGCGCTGGCTGCTCACGCTCGCTTATGGCTATGCGGGCTGGCGGCATCTGGCGACCCCA GAGCCTTTCCTCGCGATCAC
Product: FAD-dependent pyridine nucleotide-disulphide oxidoreductase
Products: NA
Alternate protein names: NFR [H]
Number of amino acids: Translated: 434; Mature: 434
Protein sequence:
>434_residues MRHVAIVGSGPAGYYTAETLQKADDIAVDVIDRLPVPYGLIRTGVAPDHQSIKAVSRRYEGVALTDNVRFVGHVAVGADV SIAELVALYDAVILATGAPNDRPLGIPGADLRGVIGSAAFVGWYNGHPDFAHLDPPLDAPGVAVIGNGNVALDVARILAK TSAEFAGSDIVAHARTALAASGVRHIHILGRRGPHQIAMTPKELGELAHLERASPRVDPADLPDEGGDALLEPGMRKSVT HLRSFAANPVAKPVTIDFDFFAMPVAIEGTHENGGRVQRVIVERTELDADLRSHGTGETYAIDAGLVISCIGYQTPPIPG VPYEHGRGRFANDEGRILPGLYCVGWARRGPSGTIGTNKPDGARVAEMVLEDIGRGAGKVGRPGLDALLASRGIAPVTFR DWRRIDAAEVAAALDGSPREKFTSVEAMLAAIGR
Sequences:
>Translated_434_residues MRHVAIVGSGPAGYYTAETLQKADDIAVDVIDRLPVPYGLIRTGVAPDHQSIKAVSRRYEGVALTDNVRFVGHVAVGADV SIAELVALYDAVILATGAPNDRPLGIPGADLRGVIGSAAFVGWYNGHPDFAHLDPPLDAPGVAVIGNGNVALDVARILAK TSAEFAGSDIVAHARTALAASGVRHIHILGRRGPHQIAMTPKELGELAHLERASPRVDPADLPDEGGDALLEPGMRKSVT HLRSFAANPVAKPVTIDFDFFAMPVAIEGTHENGGRVQRVIVERTELDADLRSHGTGETYAIDAGLVISCIGYQTPPIPG VPYEHGRGRFANDEGRILPGLYCVGWARRGPSGTIGTNKPDGARVAEMVLEDIGRGAGKVGRPGLDALLASRGIAPVTFR DWRRIDAAEVAAALDGSPREKFTSVEAMLAAIGR >Mature_434_residues MRHVAIVGSGPAGYYTAETLQKADDIAVDVIDRLPVPYGLIRTGVAPDHQSIKAVSRRYEGVALTDNVRFVGHVAVGADV SIAELVALYDAVILATGAPNDRPLGIPGADLRGVIGSAAFVGWYNGHPDFAHLDPPLDAPGVAVIGNGNVALDVARILAK TSAEFAGSDIVAHARTALAASGVRHIHILGRRGPHQIAMTPKELGELAHLERASPRVDPADLPDEGGDALLEPGMRKSVT HLRSFAANPVAKPVTIDFDFFAMPVAIEGTHENGGRVQRVIVERTELDADLRSHGTGETYAIDAGLVISCIGYQTPPIPG VPYEHGRGRFANDEGRILPGLYCVGWARRGPSGTIGTNKPDGARVAEMVLEDIGRGAGKVGRPGLDALLASRGIAPVTFR DWRRIDAAEVAAALDGSPREKFTSVEAMLAAIGR
Specific function: May serve as electron transfer protein and supply electrons to P450 systems [H]
COG id: COG0493
COG function: function code ER; NADPH-dependent glutamate synthase beta chain and related oxidoreductases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ferredoxin--NADP reductase type 1 family [H]
Homologues:
Organism=Homo sapiens, GI111118981, Length=452, Percent_Identity=40.2654867256637, Blast_Score=293, Evalue=3e-79, Organism=Homo sapiens, GI111118983, Length=458, Percent_Identity=39.7379912663755, Blast_Score=287, Evalue=1e-77, Organism=Escherichia coli, GI87082180, Length=187, Percent_Identity=28.8770053475936, Blast_Score=62, Evalue=9e-11, Organism=Caenorhabditis elegans, GI17543860, Length=443, Percent_Identity=33.4085778781038, Blast_Score=229, Evalue=2e-60, Organism=Saccharomyces cerevisiae, GI6320584, Length=483, Percent_Identity=30.2277432712215, Blast_Score=201, Evalue=1e-52, Organism=Drosophila melanogaster, GI17137178, Length=449, Percent_Identity=36.0801781737194, Blast_Score=239, Evalue=2e-63,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013027 - InterPro: IPR021163 - InterPro: IPR016040 [H]
Pfam domain/function: PF07992 Pyr_redox_2 [H]
EC number: =1.18.1.2 [H]
Molecular weight: Translated: 45665; Mature: 45665
Theoretical pI: Translated: 6.40; Mature: 6.40
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRHVAIVGSGPAGYYTAETLQKADDIAVDVIDRLPVPYGLIRTGVAPDHQSIKAVSRRYE CCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHCC GVALTDNVRFVGHVAVGADVSIAELVALYDAVILATGAPNDRPLGIPGADLRGVIGSAAF CEEEECCCEEEEEEEECCCCHHHHHHHHHHHHEEEECCCCCCCCCCCCCHHHHHHHCCEE VGWYNGHPDFAHLDPPLDAPGVAVIGNGNVALDVARILAKTSAEFAGSDIVAHARTALAA EEEECCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH SGVRHIHILGRRGPHQIAMTPKELGELAHLERASPRVDPADLPDEGGDALLEPGMRKSVT CCCEEEEEECCCCCCEEEECHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCHHHHHH HLRSFAANPVAKPVTIDFDFFAMPVAIEGTHENGGRVQRVIVERTELDADLRSHGTGETY HHHHHHCCCCCCCEEEEECCEEEEEEEECCCCCCCEEEEEEHHHHHCCHHHHHCCCCCEE AIDAGLVISCIGYQTPPIPGVPYEHGRGRFANDEGRILPGLYCVGWARRGPSGTIGTNKP EECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCC DGARVAEMVLEDIGRGAGKVGRPGLDALLASRGIAPVTFRDWRRIDAAEVAAALDGSPRE CHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHCCHHHHHHHHCCCCHH KFTSVEAMLAAIGR HHHHHHHHHHHHCC >Mature Secondary Structure MRHVAIVGSGPAGYYTAETLQKADDIAVDVIDRLPVPYGLIRTGVAPDHQSIKAVSRRYE CCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHCC GVALTDNVRFVGHVAVGADVSIAELVALYDAVILATGAPNDRPLGIPGADLRGVIGSAAF CEEEECCCEEEEEEEECCCCHHHHHHHHHHHHEEEECCCCCCCCCCCCCHHHHHHHCCEE VGWYNGHPDFAHLDPPLDAPGVAVIGNGNVALDVARILAKTSAEFAGSDIVAHARTALAA EEEECCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH SGVRHIHILGRRGPHQIAMTPKELGELAHLERASPRVDPADLPDEGGDALLEPGMRKSVT CCCEEEEEECCCCCCEEEECHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCHHHHHH HLRSFAANPVAKPVTIDFDFFAMPVAIEGTHENGGRVQRVIVERTELDADLRSHGTGETY HHHHHHCCCCCCCEEEEECCEEEEEEEECCCCCCCEEEEEEHHHHHCCHHHHHCCCCCEE AIDAGLVISCIGYQTPPIPGVPYEHGRGRFANDEGRILPGLYCVGWARRGPSGTIGTNKP EECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCC DGARVAEMVLEDIGRGAGKVGRPGLDALLASRGIAPVTFRDWRRIDAAEVAAALDGSPRE CHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHCCHHHHHHHHCCCCHH KFTSVEAMLAAIGR HHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036; 12071965; 12614197; 12102623 [H]