| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487744
Identifier: 103487744
GI number: 103487744
Start: 2381973
End: 2382398
Strand: Direct
Name: 103487744
Synonym: Sala_2263
Alternate gene names: NA
Gene position: 2381973-2382398 (Clockwise)
Preceding gene: 103487743
Following gene: 103487748
Centisome position: 71.21
GC content: 70.66
Gene sequence:
>426_bases ATGGAAGACATCTTGTCGTCGATTCGGCGCGTGATCGCCCGCGACGAGGCGCCCGGCGCCGCGCGCGAGATTCGCGTCCC CGAAGCCGACGATATTCTCGACCTTCAGGATCGCGACGAACGCGCCGCGTCCGTTTCCGGGGCCGCGTCCGTTTCCGGGG ACGCGCCCGCCGCTGACGACGATCTTGTCTCCGAAGCGAGCGCCGACGCCGCGCGCCAGTCGCTCGAGGCGCTGACCGCC GTGGTCGCGCCCGCGGTTGCCGCGGCGACCGCCCCCGCGCCGGCCGCGGCGGGCCGCACGATGGAAGAGGTCGTGCTCGA CGCGCTCCGCCCGATGCTGAAAGAATGGCTCGACGCCAATCTGCCCGCGCTGGTCGAGGCAATGGTGGCGAAGGAAATCA GCCGGATTACAGGCAAGCGGGGTTAG
Upstream 100 bases:
>100_bases TTGGCAAAGGTCGCCCGGAATCTTTAAGACAAGGGTTAACCATCCGGTAATCGCGATGGTTTAGGGGGCTTGTATGGGCG ATATGTCGCGGGAACCGTCG
Downstream 100 bases:
>100_bases GCACCTGCCTTCATAATGACCGTTGGCCGCTATGGCCGCTAACGACCGAACCTAGCCGTCGCCCCGCACAGGCGGGGGCC GCTGTCGGATTAAGCAGCGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 141; Mature: 141
Protein sequence:
>141_residues MEDILSSIRRVIARDEAPGAAREIRVPEADDILDLQDRDERAASVSGAASVSGDAPAADDDLVSEASADAARQSLEALTA VVAPAVAAATAPAPAAAGRTMEEVVLDALRPMLKEWLDANLPALVEAMVAKEISRITGKRG
Sequences:
>Translated_141_residues MEDILSSIRRVIARDEAPGAAREIRVPEADDILDLQDRDERAASVSGAASVSGDAPAADDDLVSEASADAARQSLEALTA VVAPAVAAATAPAPAAAGRTMEEVVLDALRPMLKEWLDANLPALVEAMVAKEISRITGKRG >Mature_141_residues MEDILSSIRRVIARDEAPGAAREIRVPEADDILDLQDRDERAASVSGAASVSGDAPAADDDLVSEASADAARQSLEALTA VVAPAVAAATAPAPAAAGRTMEEVVLDALRPMLKEWLDANLPALVEAMVAKEISRITGKRG
Specific function: Unknown
COG id: COG3827
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14598; Mature: 14598
Theoretical pI: Translated: 4.14; Mature: 4.14
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEDILSSIRRVIARDEAPGAAREIRVPEADDILDLQDRDERAASVSGAASVSGDAPAADD CHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCH DLVSEASADAARQSLEALTAVVAPAVAAATAPAPAAAGRTMEEVVLDALRPMLKEWLDAN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCHHHHHHHHHHHHHHHHHCCC LPALVEAMVAKEISRITGKRG CHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MEDILSSIRRVIARDEAPGAAREIRVPEADDILDLQDRDERAASVSGAASVSGDAPAADD CHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCH DLVSEASADAARQSLEALTAVVAPAVAAATAPAPAAAGRTMEEVVLDALRPMLKEWLDAN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCHHHHHHHHHHHHHHHHHCCC LPALVEAMVAKEISRITGKRG CHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA